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3.4.21.92: Endopeptidase Clp

This is an abbreviated version!
For detailed information about Endopeptidase Clp, go to the full flat file.

Word Map on EC 3.4.21.92

Reaction

Hydrolysis of proteins to small peptides in the presence of ATP and Mg2+. alpha-Casein is the usual test substrate. In the absence of ATP, only oligopeptides shorter than five residues are hydrolysed (such as succinyl-Leu-Tyr-/-NHMec, and Leu-Tyr-Leu-/-Tyr-Trp, in which cleavage of the -Tyr-/-Leu- and -Tyr-/-Trp bonds also occurs) =

Synonyms

ATP-dependent caseinolytic protease, ATP-dependent Clp protease, ATP-dependent Clp protease proteolytic subunit 1, ATP-dependent Clp protease proteolytic subunit 2, BsClpP, Caseinolytic protease, CLP, Clp protease, Clp proteolytic subunit, ClpA, ClpAP, ClpAP protease, ClpB, ClpC, ClpC ATPase, ClpC1, ClpCP protease, ClpCP3/R protease, ClpE, ClpP, ClpP Peptidase, ClpP Protease, ClpP protease complex, ClpP1, ClpP1 protease, ClpP1P2, ClpP2, ClpP2 protease, ClpP3, ClpP3/R complex, ClpQ, ClpR, ClpS1, ClpX, ClpX2, ClpXP, ClpXP protease, ClpY, CplC, endopeptidase Clp, endopeptidase Ti, Heat shock protein F21.5, heat-shock protease ClpP, nClpP7, nClpP8, PfClpP, Protease Ti, stress protein G7

ECTree

     3 Hydrolases
         3.4 Acting on peptide bonds (peptidases)
             3.4.21 Serine endopeptidases
                3.4.21.92 Endopeptidase Clp

Substrates Products

Substrates Products on EC 3.4.21.92 - Endopeptidase Clp

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SUBSTRATE
PRODUCT                       
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
Reversibility
r=reversible
ir=irreversible
?=not specified
31-knotted methyltransferase YbeA-ssrA + H2O
?
show the reaction diagram
-
substrate contains a deep trefoil knot, with 70 and 34 residues lying to the N- and C-terminus of the knotted core, and is fused to the 11-amino acid ssrA degron
-
-
?
52-knotted ubiquitin C-terminal hydrolase L1-ssrA
?
show the reaction diagram
-
substrate is fused to the 11-amino acid ssrA degron
-
-
?
Abz-KASPVSLGY(NO2)D + H2O
?
show the reaction diagram
-
-
-
-
?
alkaline phosphatase + H2O
?
show the reaction diagram
-
-
-
-
?
alpha-casein + H2O
?
show the reaction diagram
-
is completely degraded by ClpC and ClpP3/R within 20 min
-
-
?
antitoxin epsilon + H2O
?
show the reaction diagram
-
Epsilon is an antitoxin of the Epsilon/Zeta toxin-antitoxin system family, purified Zeta toxin protects the Epsilon protein from rapid ClpXP-catalyzed degradation
-
-
?
Arc-ssrA + H2O
peptides
show the reaction diagram
-
Arc repressor with a C-terminal ssrA tag
-
-
?
Bacteriophage lambdaO-DNA replication protein + H2O
Hydrolyzed bacteriophage lambdaO-DNA replication protein
show the reaction diagram
beta-casein + H2O
?
show the reaction diagram
beta-Galactosidase fusion proteins + H2O
Hydrolyzed beta-galactosidase fusion protein
show the reaction diagram
-
-
-
-
?
casein + H2O
?
show the reaction diagram
casein + H2O
small peptides derived from casein
show the reaction diagram
casein-fluorescein isothiocyanate + H2O
?
show the reaction diagram
-
-
-
?
central competence regulator sigmax + H2O
?
show the reaction diagram
chlorophyll + H2O
?
show the reaction diagram
-
-
-
-
?
chlorophyllide a oxygenase + H2O
?
show the reaction diagram
-
ClpC1 regulates the level of chlorophyllide a oxygenase, chloroplast ClpC1 regulates chlorophyll b biosynthesis
-
-
?
CM-titin-ssrA + H2O
?
show the reaction diagram
-
-
-
-
?
COMK + H2O
?
show the reaction diagram
-
ClpCP, MecA required
-
-
?
copper transporter PAA2/HMA8 + H2O
?
show the reaction diagram
CtrA + H2O
?
show the reaction diagram
-
-
-
-
?
elongation factor Ts + H2O
?
show the reaction diagram
-
clpP6 mutant have impaired photosynthesis and chloroplast development
-
-
?
fEGFP-ssrA + H2O
?
show the reaction diagram
i.e. N-terminal His-tagged superfolder enhanced green fluorescent protein with the ssrA tag sequence at the C-terminus
-
-
?
FITC-casein + H2O
?
show the reaction diagram
-
neither ClpC nor ClpP3/R alone degrade FITC-casein but they do when added together. No proteolytic activity when ClpP3 alone is combined with ClpC
-
-
?
FixK2 + H2O
?
show the reaction diagram
substrate is a CRP-like transcription factor that controls the endosymbiotic lifestyle of Bradyrhizobium japonicum. Degradation occurs by the ClpAP1 chaperone-protease complex, but not by the ClpXP1 chaperone-protease complex, and is inhibited by the ClpS1 adaptor protein. The last 12 amino acids of FixK2 are recognized by ClpA
-
-
?
FlhC subunit + H2O + ATP
?
show the reaction diagram
FR-GFP + H2O
?
show the reaction diagram
-
ClpCP3/R with ClpS1 take over 20 min to completely degrade FR-GFP, whereas the ClpAP protease degrades all FR-GFP within 2 min
-
-
?
GFP-K17 fusion protein + H2O
?
show the reaction diagram
-
-
-
-
?
GFP-ssrA + H2O
?
show the reaction diagram
-
-
-
-
?
Glucagon + H2O
Hydrolyzed glucagon
show the reaction diagram
Gly-L-Arg-7-amido-4-methylcoumarin + H2O
Gly-L-Arg + 7-amino-4-methylcoumarin
show the reaction diagram
substrate for the recombinant ClpP
-
-
?
green-fluorescent-protein-ssrA + H2O
?
show the reaction diagram
-
-
-
-
?
Hsp90 + H2O
?
show the reaction diagram
-
-
-
-
?
insulin chain B + H2O
?
show the reaction diagram
-
-
-
-
?
LacZ + H2O
?
show the reaction diagram
Lambda O Arc + H2O
?
show the reaction diagram
-
Arc repressor with a N-terminal lambda O degradation tag
-
-
?
lambda O CM-titiin + H2O
?
show the reaction diagram
-
-
-
-
?
Lambda O CM-titin + H2O
?
show the reaction diagram
-
-
-
-
?
Leu-Tyr-Leu-Tyr-Trp + H2O
Leu-Tyr-Leu + Tyr-Trp
show the reaction diagram
-
cleavage occurs primarily at Leu3-Tyr4, but significant cleavage also at Tyr2-Leu3 and Leu4-Trp5 bond
-
?
LexA N-terminal domain + H2O
?
show the reaction diagram
-
-
-
-
?
luciferase-ssrA + H2O
?
show the reaction diagram
-
-
-
-
?
MurAA + H2O
?
show the reaction diagram
-
MecA not required for degradation
-
-
?
Mutated repressor of Mu prophage + H2O
Hydrolyzed mutated repressor of Mu prophage
show the reaction diagram
-
high susceptibility to the Clp-dependent degradation
-
-
?
N-succinyl-Ile-Ile-Trp-7-amido-4-methylcoumarin + H2O
N-succinyl-Ile-Ile-Trp + 7-amino-4-methylcoumarin
show the reaction diagram
-
throughout the 5 min time course, ClpP readily degrades the dipeptide, whereas ClpP3/R does not. Prolonging the incubation time with ClpP3/R to 20 min does not result in any visible degradation. Addition of ClpC to the assays also fails to produce any degradation
-
-
?
N-succinyl-L-isoleucine-L-isoleucine-L-tryptophan-7-amido-4-methylcoumarin + H2O
?
show the reaction diagram
-
-
-
?
N-succinyl-Leu-Tyr 4-methylcoumarin 7-amide + H2O
N-succinyl-Leu-Tyr + 7-amino-4-methylcoumarin
show the reaction diagram
N-succinyl-Leu-Tyr-7-amido-4-methylcoumarin + H2O
?
show the reaction diagram
N-succinyl-Leu-Tyr-7-amido-4-methylcoumarin + H2O
N-succinyl-Leu-Tyr + 7-amino-4-methylcoumarin
show the reaction diagram
N-succinyl-LLVY-7-amido-4-methylcoumarin + H2O
?
show the reaction diagram
-
-
-
?
N-succinyl-Val-Lys-Met-7-amido-4-methylcoumarin + H2O
N-succinyl-Val-Lys-Met + 7-amino-4-methylcoumarin
show the reaction diagram
-
throughout the 5 min time course, ClpP readily degrades the dipeptide, whereas ClpP3/R does not. Prolonging the incubation time with ClpP3/R to 20 min does not result in any visible degradation. Addition of ClpC to the assays also fails to produce any degradation
-
-
?
ornithine decarboxylase CC030 + H2O
?
show the reaction diagram
-
-
CC0360 is rapidly degraded by ClpP protease in vitro. CC0360 is exclusively degraded by the full-length ClpXP complex and not by a version of ClpX lacking the Nterminal domain
-
?
Oxidized insulin B-chain + H2O
Hydrolyzed insulin B-chain
show the reaction diagram
-
cleavage at multiple sites
-
-
?
Phe-Ala-Pro-His-Met-Ala-Leu-Val-Pro-Val + H2O
?
show the reaction diagram
-
synthetic polypeptide that corresponds to the 10 amino acids surrounding the in vivo processing site in ClpP subunit
-
-
?
protein RepA + H2O
?
show the reaction diagram
-
model substrate from bacteriophage P1
-
?
RNA Helicase + H2O
?
show the reaction diagram
-
-
-
-
?
RpoS sigma factor + H2O
?
show the reaction diagram
-
with the assistance of recognition factor RssB, ClpXP degrades the RpoS sigma factor
-
-
?
RsiW + H2O
?
show the reaction diagram
-
ClXCP, AA at C-terminal as degradation tag
-
-
?
Sda + H2O
?
show the reaction diagram
-
ClpXP, VSS at C-terminal as degradation tag
-
-
?
SpollAB + H2O
?
show the reaction diagram
-
ClpCP, LCN at C-terminal as degradation tag, MecA not required, production of ClpP is strongly increased in response to heat shock or other stress signals, ClpP removes heat damaged proteins
-
-
?
Spx + H2O
?
show the reaction diagram
SsrA tagged proteins + H2O
?
show the reaction diagram
-
ClpXP, AA at C-terminal as degradation tag
-
-
?
ssrA-dabsyl + H2O
?
show the reaction diagram
-
initial rate of degradation of this intermediate-sized substrate is 3fold faster with ClpAP as compared to wild-type Clp and 5fold faster with ClpPDELTAN as compared to wild-type ClpP
-
-
?
SsrA-tagged LacZ + H2O
?
show the reaction diagram
stalk synthesis transcription factor TacA + H2O
?
show the reaction diagram
-
TacA degradation is controlled during the cell cycle dependent on the ClpXP regulator CpdR and stabilization of TacA increases degradation of another ClpXP substrate, CtrA, while restoring deficiencies associated with prolific CpdR activity
-
-
?
Starvation proteins + H2O
?
show the reaction diagram
-
the ClpP proteolytic subunit plays a subtle but important role when cells are recovering from starvation. This enzyme is important in the selective degradation of starvation proteins when growth resumes
-
-
?
Suc-AAPF-4-methylcoumarin-7-amide + H2O
?
show the reaction diagram
-
-
-
?
Suc-AFK-4-methylcoumarin-7-amide + H2O
?
show the reaction diagram
-
-
-
?
Suc-IA-4-methylcoumarin-7-amide + H2O
?
show the reaction diagram
-
-
-
?
Suc-IIW-4-methylcoumarin-7-amide + H2O
?
show the reaction diagram
-
-
-
?
Suc-LY-4-methylcoumarin-7-amide + H2O
?
show the reaction diagram
-
-
-
?
Succinyl-Ala-Ala-Phe 4-methylcoumarin 7-amide + H2O
Succinyl-Ala-Ala + Phe 4-methylcoumarin 7-amide
show the reaction diagram
succinyl-L-Leu-L-Lys-7-amido-4-methylcoumarin + H2O
?
show the reaction diagram
recombinant mature ClpP is most active against succinyl-L-Leu-L-Lys-7-amido-4-methylcoumarin
-
-
?
succinyl-L-Leu-L-Tyr-7-amido-4-methylcoumarin + H2O
succinyl-L-Leu-L-Tyr + 7-amino-4-methylcoumarin
show the reaction diagram
recombinant ClpP does not cleave the known ClpP substrate succinyl-L-Leu-L-Tyr-7-amido-4-methylcoumarin
-
-
?
Succinyl-Leu-Leu-Val-Tyr 4-methylcoumarin 7-amide + H2O
Succinyl-Leu + Leu + Val-Tyr 4-methylcoumarin 7-amide
show the reaction diagram
Succinyl-Leu-Tyr 4-methylcoumarin 7-amide + H2O
Succinyl-Leu-Tyr + 7-amino-4-methylcoumarin
show the reaction diagram
-
ClpP subunit alone
-
?
succinyl-LLVY-7-amido-4-methylcoumarin + H2O
succinyl-LLVY + 7-amino-4-methylcoumarin
show the reaction diagram
-
-
-
?
succinyl-LY-4-methylcoumarin-7-amide + H2O
?
show the reaction diagram
-
-
-
-
?
additional information
?
-