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Information on Organism Photobacterium leiognathi

Synonyms:
ATCC 25521; CAIM 327; CCUG 16229; CIP 66.5; culture-collection:CAIM:327; LMG 4228; LMG:4228; Photobacterium leiognathi Boisvert et al. 1967; Photobacterium leiognathi; Photobacterium sp. CMB_001;
Word Map for Organism Photobacterium leiognathi
TaxTree of Organism Photobacterium leiognathi
Condensed Tree View
cellular organisms
Bacteria can be found in Brenda BRENDA pathways(superkingdom)
Proteobacteria can be found in Brenda BRENDA pathways(phylum)
Gammaproteobacteria can be found in Brenda BRENDA pathways(class)
Vibrionales can be found in Brenda BRENDA pathways(order)
Vibrionaceae can be found in Brenda BRENDA pathways(family)
Photobacterium can be found in Brenda BRENDA pathways(genus)
Photobacterium leiognathi can be found in Brenda BRENDA pathways(species)
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PATHWAY
BRENDA Link
KEGG Link
MetaCyc Link
(5R)-carbapenem carboxylate biosynthesis
(S)-lactate fermentation to propanoate, acetate and hydrogen
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PWY-8086
1-butanol autotrophic biosynthesis (engineered)
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PWY-6886
2-deoxy-D-glucose 6-phosphate degradation
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PWY-8121
2-nitrotoluene degradation
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PWY-5641
4-hydroxyphenylacetate degradation
5,6-dimethylbenzimidazole biosynthesis I (aerobic)
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PWY-5523
6-hydroxymethyl-dihydropterin diphosphate biosynthesis
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6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
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PWY-6147
6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
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PWY-7539
6-hydroxymethyl-dihydropterin diphosphate biosynthesis IV (Plasmodium)
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PWY-7852
adenosine nucleotides degradation I
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PWY-6596
adenosine nucleotides degradation II
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SALVADEHYPOX-PWY
aerobic toluene degradation
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alanine metabolism
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Alanine, aspartate and glutamate metabolism
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Amino sugar and nucleotide sugar metabolism
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anaerobic energy metabolism (invertebrates, cytosol)
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PWY-7383
Arginine and proline metabolism
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Arginine biosynthesis
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arginine metabolism
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aromatic biogenic amine degradation (bacteria)
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PWY-7431
aspartate and asparagine metabolism
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bacterial bioluminescence
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PWY-7723
Benzoate degradation
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beta-Alanine metabolism
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Bifidobacterium shunt
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P124-PWY
Biosynthesis of secondary metabolites
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Biosynthesis of unsaturated fatty acids
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C4 and CAM-carbon fixation
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Carbon fixation pathways in prokaryotes
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catechol degradation to 2-hydroxypentadienoate I
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P183-PWY
catechol degradation to 2-hydroxypentadienoate II
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PWY-5419
Chlorocyclohexane and chlorobenzene degradation
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CMP-N-acetylneuraminate biosynthesis I (eukaryotes)
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PWY-6138
CMP-N-acetylneuraminate biosynthesis II (bacteria)
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PWY-6139
complex N-linked glycan biosynthesis (vertebrates)
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PWY-7426
cutin biosynthesis
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PWY-321
Cutin, suberine and wax biosynthesis
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Cyanoamino acid metabolism
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Cysteine and methionine metabolism
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dibenzothiophene desulfurization
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PWY-681
diethylphosphate degradation
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PWY-5491
drosopterin and aurodrosopterin biosynthesis
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PWY-7442
dTMP de novo biosynthesis (mitochondrial)
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PWY66-385
Entner-Doudoroff pathway I
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PWY-8004
Entner-Doudoroff pathway II (non-phosphorylative)
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NPGLUCAT-PWY
Entner-Doudoroff pathway III (semi-phosphorylative)
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PWY-2221
erythro-tetrahydrobiopterin biosynthesis I
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PWY-5663
ethanol degradation IV
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PWY66-162
ethene biosynthesis III (microbes)
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PWY-6854
Fatty acid elongation
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flavin biosynthesis
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flavin biosynthesis I (bacteria and plants)
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RIBOSYN2-PWY
flavin biosynthesis II (archaea)
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PWY-6167
flavin biosynthesis III (fungi)
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PWY-6168
Folate biosynthesis
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folate transformations II (plants)
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PWY-3841
folate transformations III (E. coli)
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1CMET2-PWY
ganglio-series glycosphingolipids biosynthesis
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PWY-7836
glycerol degradation to butanol
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PWY-7003
Glycerolipid metabolism
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glycine metabolism
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glycolysis
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Glycolysis / Gluconeogenesis
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glycolysis I (from glucose 6-phosphate)
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GLYCOLYSIS
glycolysis II (from fructose 6-phosphate)
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PWY-5484
glycolysis III (from glucose)
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ANAGLYCOLYSIS-PWY
glycolysis IV
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PWY-1042
glycolysis V (Pyrococcus)
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P341-PWY
Glyoxylate and dicarboxylate metabolism
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guanosine nucleotides degradation I
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PWY-6607
guanosine nucleotides degradation II
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PWY-6606
guanosine nucleotides degradation III
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PWY-6608
heterolactic fermentation
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P122-PWY
inosine 5'-phosphate degradation
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PWY-5695
L-alanine degradation II (to D-lactate)
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ALACAT2-PWY
L-alanine degradation VI (reductive Stickland reaction)
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PWY-8188
L-arginine degradation V (arginine deiminase pathway)
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ARGDEGRAD-PWY
L-arginine degradation XIII (reductive Stickland reaction)
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PWY-8187
L-arginine degradation XIV (oxidative Stickland reaction)
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PWY-6344
L-asparagine degradation I
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ASPARAGINE-DEG1-PWY
L-asparagine degradation III (mammalian)
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ASPARAGINE-DEG1-PWY-1
L-citrulline biosynthesis
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CITRULBIO-PWY
L-histidine degradation V
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PWY-5031
L-lactaldehyde degradation
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L-Ndelta-acetylornithine biosynthesis
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PWY-6922
L-proline degradation I
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PROUT-PWY
lactate fermentation
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lacto-series glycosphingolipids biosynthesis
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PWY-7839
lipid A biosynthesis
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lipid A-core biosynthesis (E. coli K-12)
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LIPA-CORESYN-PWY
lipid metabolism
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Metabolic pathways
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metabolism of amino sugars and derivatives
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Methane metabolism
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methanol oxidation to formaldehyde IV
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PWY-5506
Microbial metabolism in diverse environments
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mixed acid fermentation
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FERMENTATION-PWY
Mucin type O-glycan biosynthesis
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N-Glycan biosynthesis
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NAD metabolism
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NAD salvage (plants)
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PWY-5381
NAD salvage pathway III (to nicotinamide riboside)
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NAD-BIOSYNTHESIS-II
neolacto-series glycosphingolipids biosynthesis
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PWY-7841
Nicotinate and nicotinamide metabolism
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nitrate reduction II (assimilatory)
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PWY-381
Nitrogen metabolism
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nocardicin A biosynthesis
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PWY-7797
non-pathway related
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O-Antigen nucleotide sugar biosynthesis
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oleate biosynthesis II (animals and fungi)
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PWY-5996
One carbon pool by folate
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Other glycan degradation
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Other types of O-glycan biosynthesis
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Pantothenate and CoA biosynthesis
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pantothenate biosynthesis
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Pentose phosphate pathway
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phenol degradation
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phosphopantothenate biosynthesis I
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PANTO-PWY
photorespiration I
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PWY-181
photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
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PWY-7218
preQ0 biosynthesis
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PWY-6703
proline metabolism
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proline to cytochrome bo oxidase electron transfer
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PWY0-1544
Propanoate metabolism
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protein N-glycosylation initial phase (eukaryotic)
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MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS
Purine metabolism
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purine metabolism
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Pyrimidine metabolism
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pyruvate fermentation to (R)-lactate
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PWY-8274
pyruvate fermentation to (S)-lactate
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PWY-5481
Pyruvate metabolism
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reactive oxygen species degradation
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DETOX1-PWY-1
retinol biosynthesis
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PWY-6857
Riboflavin metabolism
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Rubisco shunt
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PWY-5723
Selenocompound metabolism
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Sphingolipid metabolism
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sporopollenin precursors biosynthesis
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PWY-6733
stearate biosynthesis I (animals)
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PWY-5972
stearate biosynthesis III (fungi)
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PWY3O-355
Styrene degradation
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suberin monomers biosynthesis
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PWY-1121
sulfopterin metabolism
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superoxide radicals degradation
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DETOX1-PWY
superpathway of fermentation (Chlamydomonas reinhardtii)
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PWY4LZ-257
superpathway of glucose and xylose degradation
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PWY-6901
superpathway of L-aspartate and L-asparagine biosynthesis
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ASPASN-PWY
terminal O-glycans residues modification (via type 2 precursor disaccharide)
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PWY-7434
tetrahydrofolate biosynthesis I
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PWY-6614
tetrahydrofolate metabolism
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tetrahydromonapterin biosynthesis
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PWY0-1433
Thiamine metabolism
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thioredoxin pathway
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THIOREDOX-PWY
threo-tetrahydrobiopterin biosynthesis
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PWY-6983
toluene degradation II (aerobic) (via 4-methylcatechol)
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TOLUENE-DEG-3-OH-PWY
toluene degradation to 2-hydroxypentadienoate (via toluene-cis-diol)
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TOLUENE-DEG-DIOL-PWY
toluene degradation to 2-hydroxypentadienoate I (via o-cresol)
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TOLUENE-DEG-2-OH-PWY
toxoflavin biosynthesis
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PWY-7991
triacylglycerol degradation
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LIPAS-PWY
Tryptophan metabolism
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tunicamycin biosynthesis
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PWY-7821
Tyrosine metabolism
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UTP and CTP dephosphorylation I
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PWY-7185
vancomycin resistance I
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PWY-6454
Various types of N-glycan biosynthesis
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vitamin B12 metabolism
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Xylene degradation
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ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
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LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
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Cu,Zn-SOD in mammalian extracellular fluids
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Manually annotated by BRENDA team
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LINKS TO OTHER DATABASES (specific for Photobacterium leiognathi)
NCBI: Taxonomy, PubMed, Genome
SILVA: 16S/18S rRNA, 23S/28S rRNA