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Organism related
Word Map for Organism Fragaria vesca
- Fragaria vesca
- woodland
- virginiana
- rosaceae
- chiloensis
- ripening
- domestica
- malus
-
octoploid
- bretschneideri
- raspberry
- nubicola
- rubus
-
receptacle
- pyrus
-
runner
- iinumae
- duchesne
-
achene
-
homoeologous
-
non-climacteric
TaxTree of Organism Fragaria vesca
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EC NUMBER 
COMMENTARY 
-
preliminary BRENDA-supplied EC number
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PATHWAY
BRENDA Link
KEGG Link
MetaCyc Link
(3E)-4,8-dimethylnona-1,3,7-triene biosynthesis I
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PWY-5434
(S)-lactate fermentation to propanoate, acetate and hydrogen
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PWY-8086
(S)-propane-1,2-diol degradation
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PWY-7013
1,5-anhydrofructose degradation
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PWY-6992
24-epi-campesterol, fucosterol, and clionasterol biosynthesis (diatoms)
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PWY-8238
3-methylbutanol biosynthesis (engineered)
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PWY-6871
4-hydroxy-2-nonenal detoxification
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PWY-7112
5-deoxystrigol biosynthesis
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PWY-7101
acetaldehyde biosynthesis I
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PWY-6333
acetaldehyde biosynthesis II
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PWY-6330
acetone degradation I (to methylglyoxal)
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PWY-5451
acetone degradation III (to propane-1,2-diol)
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PWY-7466
acetylene degradation (anaerobic)
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P161-PWY
adlupulone and adhumulone biosynthesis
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PWY-7857
aerobic respiration I (cytochrome c)
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PWY-3781
aerobic respiration II (cytochrome c) (yeast)
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PWY-7279
aerobic respiration III (alternative oxidase pathway)
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PWY-4302
Amaryllidacea alkaloids biosynthesis
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PWY-7826
anaerobic energy metabolism (invertebrates, mitochondrial)
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PWY-7384
anthocyanin biosynthesis
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PWY-5125
anthocyanin biosynthesis (pelargonidin 3-O-glucoside)
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PWY-7267
arachidonate metabolites biosynthesis
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PWY-8397
aromatic polyketides biosynthesis
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PWY-6316
ascorbate glutathione cycle
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PWY-2261
ascorbate recycling (cytosolic)
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PWY-6370
ATP biosynthesis
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PWY-7980
avenanthramide biosynthesis
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PWY-8157
baicalein degradation (hydrogen peroxide detoxification)
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PWY-7214
benzoate biosynthesis II (CoA-independent, non-beta-oxidative)
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PWY-6444
beta-D-glucuronide and D-glucuronate degradation
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PWY-7247
betanidin degradation
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PWY-5461
bupropion degradation
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PWY66-241
butanol and isobutanol biosynthesis (engineered)
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PWY-7396
C20 prostanoid biosynthesis
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PWY66-374
C4 photosynthetic carbon assimilation cycle, NADP-ME type
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PWY-241
C4 photosynthetic carbon assimilation cycle, PEPCK type
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PWY-7117
camalexin biosynthesis
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CAMALEXIN-SYN
capsaicin biosynthesis
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PWY-5710
capsiconiate biosynthesis
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PWY-6027
cellulose degradation II (fungi)
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PWY-6788
chlorogenic acid biosynthesis I
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PWY-6039
cholesterol biosynthesis (algae, late side-chain reductase)
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PWY-8191
cholesterol biosynthesis (diatoms)
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PWY-8239
cholesterol biosynthesis (plants, early side-chain reductase)
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PWY18C3-1
cholesterol biosynthesis II (via 24,25-dihydrolanosterol)
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PWY66-3
cinnamate esters biosynthesis
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PWY-5968
cinnamoyl-CoA biosynthesis
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PWY-6457
colupulone and cohumulone biosynthesis
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PWY-5133
coumarins biosynthesis (engineered)
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PWY-7398
creatine phosphate biosynthesis
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PWY-6158
curcuminoid biosynthesis
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PWY-6432
D-xylose degradation to ethylene glycol (engineered)
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PWY-7178
detoxification of reactive carbonyls in chloroplasts
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PWY-6786
di-homo-gamma-linolenate metabolites biosynthesis
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PWY-8396
echinatin biosynthesis
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PWY-6325
ephedrine biosynthesis
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PWY-5883
ergosterol biosynthesis II
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PWY-7154
erythritol biosynthesis I
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PWY-8372
erythritol biosynthesis II
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PWY-8373
ethanol degradation I
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ETOH-ACETYLCOA-ANA-PWY
ethanol degradation II
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PWY66-21
ethanol degradation IV
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PWY66-162
ethanolamine utilization
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PWY0-1477
ethene biosynthesis I (plants)
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ETHYL-PWY
ethene biosynthesis III (microbes)
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PWY-6854
eugenol and isoeugenol biosynthesis
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PWY-5859
farnesene biosynthesis
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PWY-5725
firefly bioluminescence
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PWY-7913
flavonoid biosynthesis
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PWY1F-FLAVSYN
flavonoid biosynthesis (in equisetum)
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PWY-6787
flavonoid di-C-glucosylation
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PWY-7897
flavonol biosynthesis
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PWY-3101
furaneol and mesifurane biosynthesis
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PWY-5975
gamma-glutamyl cycle
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PWY-4041
gliotoxin biosynthesis
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PWY-7533
gluconeogenesis I
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GLUCONEO-PWY
glutathione-mediated detoxification I
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PWY-4061
glutathione-mediated detoxification II
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PWY-6842
glutathione-peroxide redox reactions
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PWY-4081
glycerol-3-phosphate to fumarate electron transfer
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PWY0-1582
heterolactic fermentation
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P122-PWY
homocysteine and cysteine interconversion
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PWY-801
homofuraneol biosynthesis
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PWY-7910
hydrogen to fumarate electron transfer
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PWY0-1576
hyperforin and adhyperforin biosynthesis
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PWY-5808
hypoglycin biosynthesis
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PWY-5826
icosapentaenoate metabolites biosynthesis
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PWY-8399
incomplete reductive TCA cycle
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P42-PWY
indole glucosinolate activation (intact plant cell)
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PWYQT-4477
isoflavonoid biosynthesis I
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PWY-2002
justicidin B biosynthesis
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PWY-6824
L-dopa and L-dopachrome biosynthesis
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PWY-6481
L-isoleucine degradation II
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PWY-5078
L-leucine degradation III
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PWY-5076
L-methionine biosynthesis I
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HOMOSER-METSYN-PWY
L-methionine biosynthesis II
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PWY-702
L-methionine degradation III
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PWY-5082
L-phenylalanine degradation III
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PWY-5079
L-tryptophan degradation V (side chain pathway)
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PWY-3162
L-tryptophan degradation X (mammalian, via tryptamine)
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PWY-6307
L-tyrosine degradation III
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PWY3O-4108
L-valine degradation II
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PWY-5057
lanosterol biosynthesis
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PWY-6132
leucodelphinidin biosynthesis
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PWY-5152
leucopelargonidin and leucocyanidin biosynthesis
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PWY1F-823
leukotriene biosynthesis
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PWY66-375
long chain fatty acid ester synthesis (engineered)
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PWY-6873
lupulone and humulone biosynthesis
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PWY-5132
luteolin biosynthesis
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PWY-5060
luteolin triglucuronide degradation
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PWY-7445
matairesinol biosynthesis
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PWY-5466
melatonin degradation I
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PWY-6398
methanol oxidation to formaldehyde IV
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PWY-5506
methylaspartate cycle
mixed acid fermentation
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FERMENTATION-PWY
NADH to fumarate electron transfer
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PWY0-1336
naringenin biosynthesis (engineered)
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PWY-7397
nicotine degradation IV
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PWY66-201
nicotine degradation V
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PWY66-221
nitric oxide biosynthesis II (mammals)
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PWY-4983
nocardicin A biosynthesis
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PWY-7797
noradrenaline and adrenaline degradation
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PWY-6342
o-diquinones biosynthesis
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PWY-6752
partial TCA cycle (obligate autotrophs)
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PWY-5913
pectin degradation I
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PWY-7246
pectin degradation II
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PWY-7248
pentachlorophenol degradation
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PCPDEG-PWY
peptido-conjugates in tissue regeneration biosynthesis
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PWY-8355
phenylethanol biosynthesis
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PWY-5751
phenylpropanoid biosynthesis
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PWY-361
phenylpropanoid biosynthesis, initial reactions
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PWY1F-467
phenylpropanoids methylation (ice plant)
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PWY-7498
pheomelanin biosynthesis
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PWY-7917
phloridzin biosynthesis
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PWY-6515
photosynthesis light reactions
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PWY-101
phytol degradation
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PWY66-389
phytosterol biosynthesis (plants)
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PWY-2541
pinobanksin biosynthesis
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PWY-5059
proanthocyanidins biosynthesis from flavanols
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PWY-641
protective electron sinks in the thylakoid membrane (PSII to PTOX)
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PWY1YI0-7
pyruvate fermentation to acetate VIII
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PWY-5768
pyruvate fermentation to acetoin III
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PWY3O-440
pyruvate fermentation to butanol I
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PWY-6583
pyruvate fermentation to ethanol I
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PWY-5480
pyruvate fermentation to ethanol II
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PWY-5486
pyruvate fermentation to ethanol III
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PWY-6587
pyruvate fermentation to isobutanol (engineered)
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PWY-7111
pyruvate fermentation to propanoate I
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P108-PWY
reactive oxygen species degradation
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DETOX1-PWY-1
reductive TCA cycle I
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P23-PWY
reductive TCA cycle II
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PWY-5392
retinol biosynthesis
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PWY-6857
rosmarinic acid biosynthesis I
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PWY-5048
salidroside biosynthesis
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PWY-6802
scopoletin biosynthesis
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PWY-6792
serotonin degradation
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PWY-6313
sesamin biosynthesis
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PWY-5469
starch degradation II
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PWY-6724
sterol:steryl ester interconversion (yeast)
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PWY-7424
suberin monomers biosynthesis
succinate to chytochrome c oxidase via cytochrome c6
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PWY1YI0-2
succinate to cytochrome bd oxidase electron transfer
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PWY0-1353
succinate to cytochrome bo oxidase electron transfer
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PWY0-1329
succinate to cytochrome c oxidase via plastocyanin
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PWY1YI0-3
succinate to plastoquinol oxidase
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PWY1YI0-8
sucrose degradation II (sucrose synthase)
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PWY-3801
superoxide radicals degradation
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DETOX1-PWY
superpathway of fermentation (Chlamydomonas reinhardtii)
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PWY4LZ-257
superpathway of glyoxylate cycle and fatty acid degradation
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PWY-561
syringetin biosynthesis
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PWY-5391
TCA cycle I (prokaryotic)
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TCA
TCA cycle II (plants and fungi)
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PWY-5690
TCA cycle III (animals)
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PWY66-398
TCA cycle IV (2-oxoglutarate decarboxylase)
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P105-PWY
TCA cycle V (2-oxoglutarate synthase)
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PWY-6969
TCA cycle VI (Helicobacter)
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REDCITCYC
TCA cycle VII (acetate-producers)
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PWY-7254
TCA cycle VIII (Chlamydia)
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TCA-1
teichuronic acid biosynthesis (B. subtilis 168)
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PWY-7820
traumatin and (Z)-3-hexen-1-yl acetate biosynthesis
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PWY-5410
triacylglycerol degradation
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LIPAS-PWY
tricin biosynthesis
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PWY-7995
tRNA processing
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PWY0-1479
UDP-N-acetyl-D-galactosamine biosynthesis I
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PWY-5512
UDP-N-acetyl-D-galactosamine biosynthesis II
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PWY-5514
vanillin biosynthesis I
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PWY-5665
xanthohumol biosynthesis
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PWY-5135
xanthommatin biosynthesis
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PWY-8249
xyloglucan degradation II (exoglucanase)
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PWY-6807
zymosterol biosynthesis
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PWY-6074
methylaspartate cycle
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PWY-6728
suberin monomers biosynthesis
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PWY-1121
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ORGANISM
COMMENTARY
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
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SOURCE TISSUE
ORGANISM
UNIPROT
COMMENTARY
LITERATURE
SOURCE
-
FvXTH6 is expressed at a relatively high level in young leaf tissue but at a low level in old leaf tissue
additional information
expression in early and late flowering
expression in early flowering
expression in late flowering
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FvXTH9 is highly expressed in fully developed green fruit, whereas its expression level dropped in later stages
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the expression pattern of FvXTH6 during fruit development shows the highest level in fully developed green fruit and with a clear decline in later stages
additional information
quantitative expression of DFR1 and DFR2 normalized to glyceraldehyde 3-phosphate dehydrogenase in receptacle and achenes of Fragaria fruits during the different stages of fruit development, overview
additional information
-
to confirm the transcriptome data, the expression pattern of FvXTH6 is examined by quantitative real-time PCR in fruit at different ripening stages as well as in leaf and flower tissues. The expression pattern of FvXTH6 during fruit development shows the highest level in fully developed green fruit and with a clear decline in later stages. The absolute expression level of FvXTH6 in fruit is much lower than that of FvXTH9. FvXTH6 is also highly expressed in flowers. FvXTH6 is expressed at relatively high level in young leaf tissue but at low level in old leaf tissue
additional information
-
to confirm the transcriptome data, the expression pattern of FvXTH9 is examined by quantitative real-time PCR in fruit at different ripening stages as well as in leaf and flower tissues. FvXTH9 is highly expressed in fully developed green fruit, whereas its expression level dropped in later stages. A high expression level of FvXTH9 is also determined in flowers, whereas its mRNA abundance is very low in all other tissues investigated. The expression pattern of FvXTH6 during fruit development resembled that of FvXTH9. FvXTH9 shows the highest expression level in green receptacles
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LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY
GeneOntology No.
LITERATURE
SOURCE
additional information
-
prediction of subcellular localization suggests a localization to the secretory pathway
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LINKS TO OTHER DATABASES (specific for Fragaria vesca)
SILVA: 16S/18S rRNA, 23S/28S rRNA
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Release 2023.1 (January 2023)
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