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Literature summary for 1.10.3.2 extracted from

  • Simoes, M.S.; Carvalho, G.G.; Ferreira, S.S.; Hernandes-Lopes, J.; de Setta, N.; Cesarino, I.
    Genome-wide characterization of the laccase gene family in Setaria viridis reveals members potentially involved in lignification (2020), Planta, 251, 46 .
    View publication on PubMed
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Application

Application Comment Organism
biotechnology five SvLAC genes (SvLAC9, SvLAC13, SvLAC15, SvLAC50, and SvLAC52) fulfill the criteria established to identify lignin-related candidates. They are strong candidates to be involved in lignin polymerization in Setaria viridis and might be good targets for lignin bioengineering strategies Setaria viridis

Metals/Ions

Metals/Ions Comment Organism Structure
copper copper-containing enzyme Setaria viridis

Organism

Organism UniProt Comment Textmining
Setaria viridis
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-
-

Posttranslational Modification

Posttranslational Modification Comment Organism
glycoprotein
-
 Setaria viridis

Source Tissue

Source Tissue Comment Organism Textmining
phloem parenchyma cell SvLAC13, SvLAC15 and SvLAC52 are strongly detected exclusively in sclerenchymatic fibers forming the hypodermis and in parenchyma cells located close to vascular bundles Setaria viridis
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sclerenchyma SvLAC13, SvLAC15 and SvLAC52 are strongly detected exclusively in sclerenchymatic fibers forming the hypodermis and in parenchyma cells located close to vascular bundles. SvLAC50 is exclusively detected in sclerenchymatic fibers surrounding the vascular bundle Setaria viridis
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Synonyms

Synonyms Comment Organism
SvLAC13
-
 Setaria viridis
SvLAC15
-
 Setaria viridis
SvLAC50
-
 Setaria viridis
SvLAC52
-
 Setaria viridis
SvLAC9
-
 Setaria viridis

General Information

General Information Comment Organism
additional information a total of 52 genes encoding laccases (SvLAC1 to SvLAC52) are found in the genome of Setaria viridis, and phylogenetic analyses show that these genes are heterogeneously distributed among the characteristic six subclades of the family and are under relaxed selective constraints. Five SvLAC genes (SvLAC9, SvLAC13, SvLAC15, SvLAC50, and SvLAC52) fulfill the criteria established to identify lignin-related candidates: (1) phylogenetic proximity to previously characterized lignin-related laccases from other species, (2) similar expression pattern to that observed for lignin biosynthetic genes in the Setaria viridis elongating internode, and (3) high expression in Setaria viridis tissues undergoing active lignification Setaria viridis