Information on Organism Ruegeria pomeroyi

TaxTree of Organism Ruegeria pomeroyi
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PATHWAY
BRENDA Link
KEGG Link
MetaCyc Link
Biosynthesis of antibiotics
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01130
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Biosynthesis of secondary metabolites
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01110
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isoprene biosynthesis II (engineered)
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PWY-7391
Metabolic pathways
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01100
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mevalonate pathway I
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PWY-922
mevalonate pathway II (archaea)
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PWY-6174
mevalonate pathway III (archaea)
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PWY-7524
Terpenoid backbone biosynthesis
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00900
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mevalonate metabolism
mevalonate metabolism
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choline degradation I
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CHOLINE-BETAINE-ANA-PWY
glycine betaine biosynthesis I (Gram-negative bacteria)
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BETSYN-PWY
Glycine, serine and threonine metabolism
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00260
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glycine betaine biosynthesis
glycine betaine biosynthesis
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choline degradation IV
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PWY-7494
glycine betaine biosynthesis II (Gram-positive bacteria)
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PWY-3722
glycine betaine biosynthesis III (plants)
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PWY1F-353
3-hydroxypropanoate cycle
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PWY-5743
3-hydroxypropanoate/4-hydroxybutanate cycle
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PWY-5789
Carbon fixation pathways in prokaryotes
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00720
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glyoxylate assimilation
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PWY-5744
Microbial metabolism in diverse environments
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01120
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CO2 fixation in Crenarchaeota
CO2 fixation in Crenarchaeota
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crotonyl-CoA/ethylmalonyl-CoA/hydroxybutyryl-CoA cycle (engineered)
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PWY-7854
ethylmalonyl-CoA pathway
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PWY-5741
Glyoxylate and dicarboxylate metabolism
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00630
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ethylmalonyl-CoA pathway
ethylmalonyl-CoA pathway
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Alanine, aspartate and glutamate metabolism
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00250
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L-alanine degradation IV
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PWY1-2
Taurine and hypotaurine metabolism
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00430
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alanine metabolism
alanine metabolism
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Tropane, piperidine and pyridine alkaloid biosynthesis
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00960
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lysine metabolism
lysine metabolism
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L-lysine degradation XI (mammalian)
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LYSINE-DEG1-PWY
Lysine degradation
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00310
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L-lysine degradation II (L-pipecolate pathway)
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PWY66-425
L-lysine degradation V
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PWY-5283
nitrate reduction I (denitrification)
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DENITRIFICATION-PWY
nitrate reduction VII (denitrification)
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PWY-6748
nitrifier denitrification
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PWY-7084
Nitrogen metabolism
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00910
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denitrification
denitrification
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sulfite oxidation I
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PWY-5276
Sulfur metabolism
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00920
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sulfate reduction
sulfate reduction
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dimethyl sulfide degradation I
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PWY-6047
ethanol degradation IV
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PWY66-162
methanol oxidation to formaldehyde IV
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PWY-5506
reactive oxygen species degradation
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DETOX1-PWY-1
superoxide radicals degradation
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DETOX1-PWY
Tryptophan metabolism
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00380
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non-pathway related
non-pathway related
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baicalein degradation (hydrogen peroxide detoxification)
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PWY-7214
betanidin degradation
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PWY-5461
justicidin B biosynthesis
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PWY-6824
luteolin triglucuronide degradation
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PWY-7445
matairesinol biosynthesis
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PWY-5466
Phenylpropanoid biosynthesis
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00940
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sesamin biosynthesis
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PWY-5469
4-sulfocatechol degradation
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PWY-6041
Benzoate degradation
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00362
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Polycyclic aromatic hydrocarbon degradation
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00624
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protocatechuate degradation II (ortho-cleavage pathway)
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PROTOCATECHUATE-ORTHO-CLEAVAGE-PWY
4-hydroxymandelate degradation
4-hydroxymandelate degradation
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gallate degradation
gallate degradation
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2,5-xylenol and 3,5-xylenol degradation
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PWY-7698
gentisate degradation I
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PWY-6223
gentisate degradation II
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PWY-7469
salicylate degradation IV
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PWY-6640
Tyrosine metabolism
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00350
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3-phenylpropionate degradation
3-phenylpropionate degradation
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Methane metabolism
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00680
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trimethylamine degradation
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PWY-6968
adenosine nucleotides degradation I
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PWY-6596
adenosine nucleotides degradation II
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SALVADEHYPOX-PWY
caffeine degradation III (bacteria, via demethylation)
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PWY-6538
guanosine nucleotides degradation I
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PWY-6607
guanosine nucleotides degradation II
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PWY-6606
guanosine nucleotides degradation III
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PWY-6608
inosine 5'-phosphate degradation
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PWY-5695
Purine metabolism
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00230
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purine nucleobases degradation I (anaerobic)
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P164-PWY
purine nucleobases degradation II (anaerobic)
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PWY-5497
theophylline degradation
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PWY-6999
purine metabolism
purine metabolism
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dimethylsulfoniopropanoate degradation III (demethylation)
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PWY-6052
acetate and ATP formation from acetyl-CoA I
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PWY0-1312
acetylene degradation (anaerobic)
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P161-PWY
ethanolamine utilization
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PWY0-1477
gallate degradation III (anaerobic)
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P3-PWY
heterolactic fermentation
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P122-PWY
L-lysine fermentation to acetate and butanoate
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P163-PWY
methanogenesis from acetate
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METH-ACETATE-PWY
mixed acid fermentation
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FERMENTATION-PWY
Propanoate metabolism
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00640
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pyruvate fermentation to acetate II
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PWY-5482
pyruvate fermentation to acetate IV
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PWY-5485
Pyruvate metabolism
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00620
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sulfoacetaldehyde degradation I
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PWY-1281
sulfolactate degradation II
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PWY-6637
superpathway of fermentation (Chlamydomonas reinhardtii)
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PWY4LZ-257
acetate fermentation
acetate fermentation
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autoinducer AI-1 biosynthesis
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PWY-6157
Cysteine and methionine metabolism
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00270
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L-tryptophan degradation XI (mammalian, via kynurenine)
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PWY-6309
tryptophan metabolism
tryptophan metabolism
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Arginine and proline metabolism
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00330
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D-Alanine metabolism
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00473
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D-Arginine and D-ornithine metabolism
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00472
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Phenylalanine metabolism
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00360
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hypotaurine degradation
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PWY-7387
taurine degradation I
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PWY-1263
1,3-propanediol biosynthesis (engineered)
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PWY-7385
Amino sugar and nucleotide sugar metabolism
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00520
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Bifidobacterium shunt
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P124-PWY
Galactose metabolism
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00052
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GDP-glucose biosynthesis
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PWY-5661
glucose and glucose-1-phosphate degradation
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GLUCOSE1PMETAB-PWY
glycogen degradation I
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GLYCOCAT-PWY
glycogen degradation II
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PWY-5941
Glycolysis / Gluconeogenesis
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00010
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glycolysis III (from glucose)
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ANAGLYCOLYSIS-PWY
Neomycin, kanamycin and gentamicin biosynthesis
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00524
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Starch and sucrose metabolism
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00500
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Streptomycin biosynthesis
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00521
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sucrose biosynthesis II
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PWY-7238
sucrose degradation III (sucrose invertase)
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PWY-621
trehalose degradation I (low osmolarity)
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TREDEGLOW-PWY
trehalose degradation II (cytosolic)
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PWY0-1182
trehalose degradation IV
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PWY-2722
trehalose degradation V
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PWY-2723
UDP-N-acetyl-D-galactosamine biosynthesis II
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PWY-5514
UDP-N-acetyl-D-glucosamine biosynthesis II
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UDPNACETYLGALSYN-PWY
glycogen metabolism
glycogen metabolism
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Oxidative phosphorylation
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00190
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adenosine ribonucleotides de novo biosynthesis
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PWY-7219
Thiamine metabolism
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00730
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diethylphosphate degradation
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PWY-5491
Folate biosynthesis
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00790
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NAD phosphorylation and dephosphorylation
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NADPHOS-DEPHOS-PWY
NAD salvage pathway III (to nicotinamide riboside)
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NAD-BIOSYNTHESIS-II
NAD/NADH phosphorylation and dephosphorylation
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PWY-5083
sulfopterin metabolism
sulfopterin metabolism
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choline-O-sulfate degradation
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P542-PWY
acetyl-CoA fermentation to butanoate II
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PWY-5676
Butanoate metabolism
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00650
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butanoate fermentation
butanoate fermentation
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methylthiopropanoate degradation I (cleavage)
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PWY-6048
dimethylsulfoniopropanoate degradation I (cleavage)
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PWY-6046
superpathway of dimethylsulfoniopropanoate degradation
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PWY-6049
sulfolactate degradation III
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PWY-6638
cysteine metabolism
cysteine metabolism
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Aminoacyl-tRNA biosynthesis
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00970
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tRNA charging
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TRNA-CHARGING-PWY
histidine metabolism
histidine metabolism
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lipid metabolism
lipid metabolism
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-
folate polyglutamylation
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PWY-2161
folate transformations I
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PWY-2201
folate transformations II
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PWY-3841
formate assimilation into 5,10-methylenetetrahydrofolate
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PWY-1722
One carbon pool by folate
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00670
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reductive acetyl coenzyme A pathway I (homoacetogenic bacteria)
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CODH-PWY
folate polyglutamylation
folate polyglutamylation
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reductive acetyl coenzyme A pathway
reductive acetyl coenzyme A pathway
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anaerobic energy metabolism (invertebrates, mitochondrial)
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PWY-7384
methylaspartate cycle
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PWY-6728
mycolate biosynthesis
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PWYG-321
propanoyl CoA degradation I
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PROPIONMET-PWY
Valine, leucine and isoleucine degradation
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00280
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oleandomycin activation/inactivation
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PWY-6972
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
SOURCE TISSUE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
SOURCE
effectively absent in acetate grown cells
Manually annotated by BRENDA team
LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
LINKS TO OTHER DATABASES (specific for Ruegeria pomeroyi)