Any feedback?
Please rate this page
(organism.php)
(0/150)

BRENDA support

Information on Organism Pseudomonas protegens Pf-5

Synonyms:
Pseudomonas fluorescens Pf-5; Pseudomonas protegens Pf-5; Pseudomonas protegens strain Pf-5; Pseudomonas protegens str. Pf-5; Pseudomonas sp. Pf-5; Pseudomonas fluorescens str. Pf-5; Pseudomonas fluorescens strain Pf-5;
Word Map for Organism Pseudomonas protegens Pf-5
TaxTree of Organism Pseudomonas protegens Pf-5
Condensed Tree View
cellular organisms
Bacteria can be found in Brenda BRENDA pathways(superkingdom)
Proteobacteria can be found in Brenda BRENDA pathways(phylum)
Gammaproteobacteria can be found in Brenda BRENDA pathways(class)
Pseudomonadales can be found in Brenda BRENDA pathways(order)
Pseudomonadaceae can be found in Brenda BRENDA pathways(family)
Pseudomonas can be found in Brenda BRENDA pathways(genus)
Pseudomonas fluorescens group can be found in Brenda BRENDA pathways(species group)
Pseudomonas protegens can be found in Brenda BRENDA pathways(species)
Pseudomonas protegens Pf-5 can be found in Brenda BRENDA pathways(strain)
Please wait a moment until all data is loaded. This message will disappear when all data is loaded.
top print hide
EC NUMBER
COMMENTARY hide
top print hide
PATHWAY
BRENDA Link
KEGG Link
MetaCyc Link
(S)-propane-1,2-diol degradation
-
-
PWY-7013
1,3-propanediol biosynthesis (engineered)
-
-
PWY-7385
2'-deoxymugineic acid phytosiderophore biosynthesis
-
-
PWY-5912
2-nitrotoluene degradation
-
-
PWY-5641
2-oxobutanoate degradation II
-
-
2OXOBUTYRATECAT-PWY
3-chlorocatechol degradation
-
-
3-methylbutanol biosynthesis (engineered)
-
-
PWY-6871
3-phenylpropanoate and 3-(3-hydroxyphenyl)propanoate degradation to 2-hydroxypentadienoate
-
-
HCAMHPDEG-PWY
3-phenylpropionate degradation
-
-
4-hydroxymandelate degradation
4-sulfocatechol degradation
-
-
PWY-6041
acetaldehyde biosynthesis I
-
-
PWY-6333
acetate and ATP formation from acetyl-CoA III
-
-
PWY-8328
acetate conversion to acetyl-CoA
-
-
PWY0-1313
acetate fermentation
-
-
acetylene degradation (anaerobic)
-
-
P161-PWY
acrylonitrile degradation II
-
-
PWY-7309
adlupulone and adhumulone biosynthesis
-
-
PWY-7857
aerobic respiration I (cytochrome c)
-
-
PWY-3781
aerobic respiration II (cytochrome c) (yeast)
-
-
PWY-7279
aerobic toluene degradation
-
-
Aflatoxin biosynthesis
-
-
alpha-Linolenic acid metabolism
-
-
Amino sugar and nucleotide sugar metabolism
-
-
Aminobenzoate degradation
-
-
apratoxin A biosynthesis
-
-
PWY-8361
arsenite to oxygen electron transfer
-
-
PWY-4521
arsenite to oxygen electron transfer (via azurin)
-
-
PWY-7429
bacterial bioluminescence
-
-
PWY-7723
Benzoate degradation
-
-
berberine biosynthesis
-
-
PWY-3901
beta-Alanine metabolism
-
-
Biosynthesis of 12-, 14- and 16-membered macrolides
-
-
Biosynthesis of secondary metabolites
-
-
Biosynthesis of unsaturated fatty acids
-
-
Biosynthesis of various secondary metabolites - part 1
-
-
butanol and isobutanol biosynthesis (engineered)
-
-
PWY-7396
Carbon fixation pathways in prokaryotes
-
-
catechol degradation to 2-hydroxypentadienoate I
-
-
P183-PWY
catechol degradation to 2-hydroxypentadienoate II
-
-
PWY-5419
catechol degradation to beta-ketoadipate
-
-
CATECHOL-ORTHO-CLEAVAGE-PWY
chelerythrine biosynthesis
-
-
PWY-7507
chitin deacetylation
-
-
PWY-7118
chitin degradation I (archaea)
-
-
PWY-6855
chitin degradation II (Vibrio)
-
-
PWY-6902
chitin degradation III (Serratia)
-
-
PWY-7822
Chloroalkane and chloroalkene degradation
-
-
Chlorocyclohexane and chlorobenzene degradation
-
-
cinnamate and 3-hydroxycinnamate degradation to 2-hydroxypentadienoate
-
-
PWY-6690
cis-geranyl-CoA degradation
-
-
PWY-6672
CO2 fixation in Crenarchaeota
-
-
colupulone and cohumulone biosynthesis
-
-
PWY-5133
coptisine biosynthesis
-
-
PWY-8030
cutin biosynthesis
-
-
PWY-321
Cyanoamino acid metabolism
-
-
D-phenylglycine degradation
-
-
PWY-8161
degradation of aromatic, nitrogen containing compounds
-
-
dehydroscoulerine biosynthesis
-
-
PWY-6337
Drug metabolism - cytochrome P450
-
-
epiberberine biosynthesis
-
-
PWY-8031
erythromycin D biosynthesis
-
-
PWY-7106
ethanol degradation I
-
-
ETOH-ACETYLCOA-ANA-PWY
ethanol degradation II
-
-
PWY66-21
ethanol degradation III
-
-
PWY66-161
ethanol degradation IV
-
-
PWY66-162
ethanol fermentation
-
-
ethanolamine utilization
-
-
PWY0-1477
Fatty acid biosynthesis
-
-
fatty acid biosynthesis initiation (type I)
-
-
PWY-5966-1
Fatty acid degradation
-
-
Fatty acid elongation
-
-
Fe(II) oxidation
-
-
PWY-6692
flavin biosynthesis
-
-
Fluorobenzoate degradation
-
-
formaldehyde assimilation II (assimilatory RuMP Cycle)
-
-
PWY-1861
Fructose and mannose metabolism
-
-
Galactose metabolism
-
-
gallate degradation
-
-
gamma-glutamyl cycle
-
-
PWY-4041
Glutathione metabolism
-
-
glutathione metabolism
-
-
Glycerolipid metabolism
-
-
Glycine, serine and threonine metabolism
-
-
glycolysis
-
-
Glycolysis / Gluconeogenesis
-
-
glycolysis I (from glucose 6-phosphate)
-
-
GLYCOLYSIS
glycolysis II (from fructose 6-phosphate)
-
-
PWY-5484
glycolysis III (from glucose)
-
-
ANAGLYCOLYSIS-PWY
glycolysis IV
-
-
PWY-1042
Glyoxylate and dicarboxylate metabolism
-
-
gossypol biosynthesis
-
-
PWY-5773
heterolactic fermentation
-
-
P122-PWY
hypoglycin biosynthesis
-
-
PWY-5826
indole glucosinolate activation (herbivore attack)
-
-
PWYQT-4476
indole-3-acetate biosynthesis II
-
-
PWY-581
indole-3-acetate biosynthesis V (bacteria and fungi)
-
-
PWY-5026
indole-3-acetate degradation II
-
-
PWY-8087
Isoquinoline alkaloid biosynthesis
-
-
jadomycin biosynthesis
-
-
PWY-6679
justicidin B biosynthesis
-
-
PWY-6824
L-isoleucine biosynthesis V
-
-
PWY-5108
L-isoleucine degradation II
-
-
PWY-5078
L-leucine degradation III
-
-
PWY-5076
L-methionine degradation III
-
-
PWY-5082
L-nicotianamine biosynthesis
-
-
PWY-5957
L-phenylalanine degradation III
-
-
PWY-5079
L-tryptophan degradation V (side chain pathway)
-
-
PWY-3162
L-tyrosine degradation III
-
-
PWY3O-4108
L-valine degradation II
-
-
PWY-5057
leucine metabolism
-
-
leukotriene biosynthesis
-
-
PWY66-375
lipid metabolism
-
-
lupulone and humulone biosynthesis
-
-
PWY-5132
macrolide antibiotic biosynthesis
-
-
mandelate degradation I
-
-
PWY-1501
matairesinol biosynthesis
-
-
PWY-5466
Metabolic pathways
-
-
Metabolism of xenobiotics by cytochrome P450
-
-
Methane metabolism
-
-
methionine metabolism
-
-
Microbial metabolism in diverse environments
-
-
mixed acid fermentation
-
-
FERMENTATION-PWY
NADPH to cytochrome c oxidase via plastocyanin
-
-
PWY-8271
Naphthalene degradation
-
-
nicotine degradation IV
-
-
PWY66-201
nitrate assimilation
-
-
nitrogen fixation I (ferredoxin)
-
-
N2FIX-PWY
Nitrogen metabolism
-
-
noradrenaline and adrenaline degradation
-
-
PWY-6342
noscapine biosynthesis
-
-
PWY-7138
oleate biosynthesis II (animals and fungi)
-
-
PWY-5996
Oxidative phosphorylation
-
-
oxidative phosphorylation
-
-
palmatine biosynthesis
-
-
PWY-5470
Pantothenate and CoA biosynthesis
-
-
pantothenate biosynthesis
-
-
Pentose phosphate pathway
-
-
peptido-conjugates in tissue regeneration biosynthesis
-
-
PWY-8355
phenol degradation
-
-
Phenylalanine metabolism
-
-
phenylalanine metabolism
-
-
phenylethanol biosynthesis
-
-
PWY-5751
phosphopantothenate biosynthesis I
-
-
PANTO-PWY
phytol degradation
-
-
PWY66-389
Polycyclic aromatic hydrocarbon degradation
-
-
Porphyrin and chlorophyll metabolism
-
-
Propanoate metabolism
-
-
propanol degradation
-
-
protocatechuate degradation II (ortho-cleavage pathway)
-
-
PROTOCATECHUATE-ORTHO-CLEAVAGE-PWY
pyrrolnitrin biosynthesis
-
-
PWY-6831
pyruvate fermentation to ethanol I
-
-
PWY-5480
pyruvate fermentation to ethanol II
-
-
PWY-5486
pyruvate fermentation to ethanol III
-
-
PWY-6587
pyruvate fermentation to isobutanol (engineered)
-
-
PWY-7111
Pyruvate metabolism
-
-
rebeccamycin biosynthesis
-
-
PWY-6324
reductive glycine pathway of autotrophic CO2 fixation
-
-
PWY-8303
retinol biosynthesis
-
-
PWY-6857
Retinol metabolism
-
-
Riboflavin metabolism
-
-
salidroside biosynthesis
-
-
PWY-6802
sanguinarine and macarpine biosynthesis
-
-
PWY-5287
serotonin degradation
-
-
PWY-6313
serotonin metabolism
-
-
sesamin biosynthesis
-
-
PWY-5469
sporopollenin precursors biosynthesis
-
-
PWY-6733
Staurosporine biosynthesis
-
-
stearate biosynthesis I (animals)
-
-
PWY-5972
stearate biosynthesis III (fungi)
-
-
PWY3O-355
Styrene degradation
-
-
suberin monomers biosynthesis
-
-
PWY-1121
succinate to chytochrome c oxidase via cytochrome c6
-
-
PWY1YI0-2
succinate to cytochrome c oxidase via plastocyanin
-
-
PWY1YI0-3
superpathway of fermentation (Chlamydomonas reinhardtii)
-
-
PWY4LZ-257
Taurine and hypotaurine metabolism
-
-
taurine biosynthesis I
-
-
PWY-5331
taurine biosynthesis II
-
-
PWY-7850
Toluene degradation
-
-
toluene degradation II (aerobic) (via 4-methylcatechol)
-
-
TOLUENE-DEG-3-OH-PWY
toluene degradation to 2-hydroxypentadienoate (via toluene-cis-diol)
-
-
TOLUENE-DEG-DIOL-PWY
toluene degradation to 2-hydroxypentadienoate I (via o-cresol)
-
-
TOLUENE-DEG-2-OH-PWY
triacylglycerol degradation
-
-
LIPAS-PWY
Tryptophan metabolism
-
-
tryptophan metabolism
-
-
Tyrosine metabolism
-
-
tyrosine metabolism
-
-
valine metabolism
-
-
Xylene degradation
-
-
top print hide
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
top
LINKS TO OTHER DATABASES (specific for Pseudomonas protegens Pf-5)
NCBI: Taxonomy, PubMed, Genome
SILVA: 16S/18S rRNA, 23S/28S rRNA