Information on Organism Photorhabdus luminescens

TaxTree of Organism Photorhabdus luminescens
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EC NUMBER
COMMENTARY hide
preliminary BRENDA-supplied EC number
preliminary BRENDA-supplied EC number
deleted 2008. Now divided into EC 4.3.1.23 (tyrosine ammonia-lyase), EC 4.3.1.24 (phenylalanine ammonia-lyase) and EC 4.3.1.25 (phenylalanine/tyrosine ammonia-lyase)
preliminary BRENDA-supplied EC number
PATHWAY
BRENDA Link
KEGG Link
MetaCyc Link
anaerobic energy metabolism (invertebrates, cytosol)
-
-
PWY-7383
Biosynthesis of antibiotics
-
01130
-
Biosynthesis of secondary metabolites
-
01110
-
C4 photosynthetic carbon assimilation cycle, NAD-ME type
-
-
PWY-7115
Carbon fixation in photosynthetic organisms
-
00710
-
Carbon fixation pathways in prokaryotes
-
00720
-
Citrate cycle (TCA cycle)
-
00020
-
Cysteine and methionine metabolism
-
00270
-
formaldehyde assimilation I (serine pathway)
-
-
PWY-1622
gluconeogenesis I
-
-
GLUCONEO-PWY
gluconeogenesis III
-
-
PWY66-399
Glyoxylate and dicarboxylate metabolism
-
00630
-
glyoxylate cycle
-
-
GLYOXYLATE-BYPASS
incomplete reductive TCA cycle
-
-
P42-PWY
L-aspartate degradation II
-
-
MALATE-ASPARTATE-SHUTTLE-PWY
Metabolic pathways
-
01100
-
Methane metabolism
-
00680
-
methylaspartate cycle
-
-
PWY-6728
Microbial metabolism in diverse environments
-
01120
-
mixed acid fermentation
-
-
FERMENTATION-PWY
partial TCA cycle (obligate autotrophs)
-
-
PWY-5913
pyruvate fermentation to propanoate I
-
-
P108-PWY
Pyruvate metabolism
-
00620
-
reductive TCA cycle I
-
-
P23-PWY
reductive TCA cycle II
-
-
PWY-5392
superpathway of glyoxylate cycle and fatty acid degradation
-
-
PWY-561
TCA cycle I (prokaryotic)
-
-
TCA
TCA cycle II (plants and fungi)
-
-
PWY-5690
TCA cycle III (animals)
-
-
PWY66-398
TCA cycle IV (2-oxoglutarate decarboxylase)
-
-
P105-PWY
TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
-
-
PWY-6969
aspartate and asparagine metabolism
aspartate and asparagine metabolism
-
-
C4 and CAM-carbon fixation
C4 and CAM-carbon fixation
-
-
citric acid cycle
citric acid cycle
-
-
pyridoxal 5'-phosphate biosynthesis I
-
-
PYRIDOXSYN-PWY
Vitamin B6 metabolism
-
00750
-
vitamin B6 metabolism
vitamin B6 metabolism
-
-
cholesterol degradation to androstenedione I (cholesterol oxidase)
-
-
PWY-6945
Steroid degradation
-
00984
-
Bifidobacterium shunt
-
-
P124-PWY
Entner-Doudoroff pathway I
-
-
PWY-8004
formaldehyde assimilation III (dihydroxyacetone cycle)
-
-
P185-PWY
glycerol degradation to butanol
-
-
PWY-7003
Glycolysis / Gluconeogenesis
-
00010
-
glycolysis I (from glucose 6-phosphate)
-
-
GLYCOLYSIS
glycolysis II (from fructose 6-phosphate)
-
-
PWY-5484
glycolysis III (from glucose)
-
-
ANAGLYCOLYSIS-PWY
glycolysis IV (plant cytosol)
-
-
PWY-1042
heterolactic fermentation
-
-
P122-PWY
sucrose biosynthesis I (from photosynthesis)
-
-
SUCSYN-PWY
superpathway of glucose and xylose degradation
-
-
PWY-6901
glycolysis
glycolysis
-
-
Phenylalanine metabolism
-
00360
-
folate transformations I
-
-
PWY-2201
folate transformations II
-
-
PWY-3841
N10-formyl-tetrahydrofolate biosynthesis
-
-
1CMET2-PWY
One carbon pool by folate
-
00670
-
reductive acetyl coenzyme A pathway I (homoacetogenic bacteria)
-
-
CODH-PWY
sulfopterin metabolism
sulfopterin metabolism
-
-
tetrahydrofolate metabolism
tetrahydrofolate metabolism
-
-
Riboflavin metabolism
-
00740
-
flavin biosynthesis
flavin biosynthesis
-
-
nitrate reduction II (assimilatory)
-
-
PWY-381
Nitrogen metabolism
-
00910
-
ammonia oxidation II (anaerobic)
-
-
P303-PWY
nitrate reduction I (denitrification)
-
-
DENITRIFICATION-PWY
nitrate reduction VII (denitrification)
-
-
PWY-6748
nitrifier denitrification
-
-
PWY-7084
nitrite-dependent anaerobic methane oxidation
-
-
PWY-6523
denitrification
denitrification
-
-
nitroethane degradation
-
-
PWY-5355
Isoquinoline alkaloid biosynthesis
-
00950
-
o-diquinones biosynthesis
-
-
PWY-6752
Tyrosine metabolism
-
00350
-
photosynthesis light reactions
-
-
PWY-101
photosynthesis
photosynthesis
-
-
ethanol degradation IV
-
-
PWY66-162
methanol oxidation to formaldehyde IV
-
-
PWY-5506
reactive oxygen species degradation
-
-
DETOX1-PWY-1
superoxide radicals degradation
-
-
DETOX1-PWY
Tryptophan metabolism
-
00380
-
non-pathway related
non-pathway related
-
-
baicalein degradation (hydrogen peroxide detoxification)
-
-
PWY-7214
betanidin degradation
-
-
PWY-5461
justicidin B biosynthesis
-
-
PWY-6824
luteolin triglucuronide degradation
-
-
PWY-7445
matairesinol biosynthesis
-
-
PWY-5466
Phenylpropanoid biosynthesis
-
00940
-
sesamin biosynthesis
-
-
PWY-5469
Arachidonic acid metabolism
-
00590
-
Glutathione metabolism
-
00480
-
glutathione-peroxide redox reactions
-
-
PWY-4081
arachidonic acid metabolism
arachidonic acid metabolism
-
-
glutathione metabolism
glutathione metabolism
-
-
Drug metabolism - other enzymes
-
00983
-
lipid metabolism
lipid metabolism
-
-
3-phenylpropanoate and 3-(3-hydroxyphenyl)propanoate degradation to 2-hydroxypentadienoate
-
-
HCAMHPDEG-PWY
cinnamate and 3-hydroxycinnamate degradation to 2-hydroxypentadienoate
-
-
PWY-6690
3-phenylpropionate degradation
3-phenylpropionate degradation
-
-
Arginine and proline metabolism
-
00330
-
Arginine biosynthesis
-
00220
-
nitric oxide biosynthesis II (mammals)
-
-
PWY-4983
1,5-anhydrofructose degradation
-
-
PWY-6992
acetone degradation I (to methylglyoxal)
-
-
PWY-5451
acetone degradation III (to propane-1,2-diol)
-
-
PWY-7466
Amaryllidacea alkaloids biosynthesis
-
-
PWY-7826
Aminobenzoate degradation
-
00627
-
bupropion degradation
-
-
PWY66-241
Caffeine metabolism
-
00232
-
Drug metabolism - cytochrome P450
-
00982
-
Fatty acid degradation
-
00071
-
Linoleic acid metabolism
-
00591
-
melatonin degradation I
-
-
PWY-6398
Metabolism of xenobiotics by cytochrome P450
-
00980
-
nicotine degradation IV
-
-
PWY66-201
nicotine degradation V
-
-
PWY66-221
Retinol metabolism
-
00830
-
Steroid hormone biosynthesis
-
00140
-
vanillin biosynthesis I
-
-
PWY-5665
bacterial bioluminescence
-
-
PWY-7723
ethylene biosynthesis III (microbes)
-
-
PWY-6854
methionine metabolism
methionine metabolism
-
-
Butanoate metabolism
-
00650
-
C5-Branched dibasic acid metabolism
-
00660
-
L-isoleucine biosynthesis I (from threonine)
-
-
ILEUSYN-PWY
L-isoleucine biosynthesis II
-
-
PWY-5101
L-isoleucine biosynthesis III
-
-
PWY-5103
L-isoleucine biosynthesis IV
-
-
PWY-5104
L-valine biosynthesis
-
-
VALSYN-PWY
Pantothenate and CoA biosynthesis
-
00770
-
pyruvate fermentation to (R)-acetoin I
-
-
PWY-5938
pyruvate fermentation to (R)-acetoin II
-
-
PWY-5939
pyruvate fermentation to (S)-acetoin
-
-
PWY-6389
pyruvate fermentation to isobutanol (engineered)
-
-
PWY-7111
Valine, leucine and isoleucine biosynthesis
-
00290
-
acetoin degradation
acetoin degradation
-
-
isoleucine metabolism
isoleucine metabolism
-
-
valine metabolism
valine metabolism
-
-
Biosynthesis of 12-, 14- and 16-membered macrolides
-
00522
-
erythromycin D biosynthesis
-
-
PWY-7106
autoinducer AI-1 biosynthesis
-
-
PWY-6157
Biosynthesis of secondary metabolites - unclassified
-
00999
-
Biosynthesis of type II polyketide backbone
-
01056
-
elloramycin biosynthesis
elloramycin biosynthesis
-
-
6-methylpretetramide biosynthesis
-
-
PWY-7811
Tetracycline biosynthesis
-
00253
-
glycogen degradation I
-
-
GLYCOCAT-PWY
glycogen degradation II
-
-
PWY-5941
Starch and sucrose metabolism
-
00500
-
starch degradation III
-
-
PWY-6731
starch degradation V
-
-
PWY-6737
sucrose biosynthesis II
-
-
PWY-7238
glycogen metabolism
glycogen metabolism
-
-
ganglio-series glycosphingolipids biosynthesis
-
-
PWY-7836
Glycosphingolipid biosynthesis - ganglio series
-
00604
-
Glycosphingolipid biosynthesis - globo and isoglobo series
-
00603
-
Glycosphingolipid biosynthesis - lacto and neolacto series
-
00601
-
4-hydroxy-2-nonenal detoxification
-
-
PWY-7112
camalexin biosynthesis
-
-
CAMALEXIN-SYN
gliotoxin biosynthesis
-
-
PWY-7533
glutathione-mediated detoxification I
-
-
PWY-4061
glutathione-mediated detoxification II
-
-
PWY-6842
indole glucosinolate activation (intact plant cell)
-
-
PWYQT-4477
pentachlorophenol degradation
-
-
PCPDEG-PWY
acyl carrier protein activation
-
-
PWY-6012-1
acyl carrier protein metabolism
-
-
PWY-6012
enterobactin biosynthesis
-
-
ENTBACSYN-PWY
petrobactin biosynthesis
-
-
PWY-6289
methyl indole-3-acetate interconversion
-
-
PWY-6303
methylsalicylate degradation
-
-
PWY18C3-24
retinol biosynthesis
-
-
PWY-6857
superpathway of methylsalicylate metabolism
-
-
PWY18C3-25
Glycerolipid metabolism
-
00561
-
triacylglycerol degradation
-
-
LIPAS-PWY
Glycerophospholipid metabolism
-
00564
-
Ascorbate and aldarate metabolism
-
00053
-
Caprolactam degradation
-
00930
-
Entner-Doudoroff pathway II (non-phosphorylative)
-
-
NPGLUCAT-PWY
Entner-Doudoroff pathway III (semi-phosphorylative)
-
-
PWY-2221
glucose and glucose-1-phosphate degradation
-
-
GLUCOSE1PMETAB-PWY
glucose degradation (oxidative)
-
-
DHGLUCONATE-PYR-CAT-PWY
L-ascorbate biosynthesis IV
-
-
PWY3DJ-35471
L-ascorbate biosynthesis VI (engineered pathway)
-
-
PWY-7165
Pentose phosphate pathway
-
00030
-
sorbitol biosynthesis II
-
-
PWY-5530
ascorbate metabolism
ascorbate metabolism
-
-
Entner Doudoroff pathway
Entner Doudoroff pathway
-
-
Insect hormone biosynthesis
-
00981
-
acyl-CoA hydrolysis
-
-
PWY-5148
Biosynthesis of unsaturated fatty acids
-
01040
-
cutin biosynthesis
-
-
PWY-321
Fatty acid elongation
-
00062
-
oleate biosynthesis II (animals and fungi)
-
-
PWY-5996
palmitate biosynthesis I (animals and fungi)
-
-
PWY-5994
sporopollenin precursors biosynthesis
-
-
PWY-6733
stearate biosynthesis I (animals and fungi)
-
-
PWY-5972
stearate biosynthesis III (fungi)
-
-
PWY3O-355
suberin monomers biosynthesis
-
-
PWY-1121
diethylphosphate degradation
-
-
PWY-5491
Folate biosynthesis
-
00790
-
NAD phosphorylation and dephosphorylation
-
-
NADPHOS-DEPHOS-PWY
NAD salvage pathway III (to nicotinamide riboside)
-
-
NAD-BIOSYNTHESIS-II
NAD/NADH phosphorylation and dephosphorylation
-
-
PWY-5083
Thiamine metabolism
-
00730
-
phosphate acquisition
-
-
PWY-6348
NAD metabolism
NAD metabolism
-
-
vitamin B1 metabolism
vitamin B1 metabolism
-
-
Glycine, serine and threonine metabolism
-
00260
-
L-serine biosynthesis I
-
-
SERSYN-PWY
serine metabolism
serine metabolism
-
-
2-arachidonoylglycerol biosynthesis
-
-
PWY-8052
Ether lipid metabolism
-
00565
-
Inositol phosphate metabolism
-
00562
-
phospholipases
-
-
LIPASYN-PWY
plasmalogen biosynthesis
-
-
PWY-7782
plasmalogen degradation
-
-
PWY-7783
sphingolipid biosynthesis (mammals)
-
-
PWY-7277
Sphingolipid metabolism
-
00600
-
sphingomyelin metabolism
-
-
PWY3DJ-11281
Amino sugar and nucleotide sugar metabolism
-
00520
-
chitin degradation I (archaea)
-
-
PWY-6855
chitin degradation II (Vibrio)
-
-
PWY-6902
chitin degradation III (Serratia)
-
-
PWY-7822
Galactose metabolism
-
00052
-
Glycosaminoglycan degradation
-
00531
-
lactose degradation II
-
-
LACTOSEUTIL-PWY
Other glycan degradation
-
00511
-
xyloglucan degradation II (exoglucanase)
-
-
PWY-6807
metabolism of disaccharids
metabolism of disaccharids
-
-
sucrose degradation III (sucrose invertase)
-
-
PWY-621
sucrose degradation V (sucrose alpha-glucosidase)
-
-
PWY66-373
nocardicin A biosynthesis
-
-
PWY-7797
acrylonitrile degradation I
-
-
PWY-7308
indole-3-acetate biosynthesis II
-
-
PWY-581
indole-3-acetate biosynthesis III (bacteria)
-
-
PWY-3161
indole-3-acetate biosynthesis IV (bacteria)
-
-
PWY-5025
L-arginine degradation X (arginine monooxygenase pathway)
-
-
ARGDEG-V-PWY
Styrene degradation
-
00643
-
arginine metabolism
arginine metabolism
-
-
degradation of aromatic, nitrogen containing compounds
degradation of aromatic, nitrogen containing compounds
-
-
IAA biosynthesis
IAA biosynthesis
-
-
Atrazine degradation
-
00791
-
Purine metabolism
-
00230
-
urea degradation II
-
-
PWY-5704
urea cycle
urea cycle
-
-
Penicillin and cephalosporin biosynthesis
-
00311
-
L-arginine degradation V (arginine deiminase pathway)
-
-
ARGDEGRAD-PWY
L-proline biosynthesis II (from arginine)
-
-
PWY-4981
purine metabolism
purine metabolism
-
-
pyrimidine deoxyribonucleotides biosynthesis from CTP
-
-
PWY-7210
pyrimidine deoxyribonucleotides de novo biosynthesis I
-
-
PWY-7184
pyrimidine deoxyribonucleotides de novo biosynthesis III
-
-
PWY-6545
pyrimidine deoxyribonucleotides de novo biosynthesis IV
-
-
PWY-7198
oxidative phosphorylation
oxidative phosphorylation
-
-
putrescine biosynthesis III
-
-
PWY-46
putrescine biosynthesis IV
-
-
PWY-6305
superpathway of ornithine degradation
-
-
ORNDEG-PWY
polyamine pathway
polyamine pathway
-
-
aminopropylcadaverine biosynthesis
-
-
PWY0-1303
bisucaberin biosynthesis
-
-
PWY-6381
cadaverine biosynthesis
-
-
PWY0-1601
desferrioxamine B biosynthesis
-
-
PWY-6376
desferrioxamine E biosynthesis
-
-
PWY-6375
L-lysine degradation I
-
-
PWY0-461
L-lysine degradation X
-
-
PWY-6328
lupanine biosynthesis
-
-
PWY-5468
Lysine degradation
-
00310
-
Tropane, piperidine and pyridine alkaloid biosynthesis
-
00960
-
lysine metabolism
lysine metabolism
-
-
bacilysin biosynthesis
-
-
PWY-7626
Biosynthesis of secondary metabolites - other antibiotics
-
00998
-
bacilysin biosynthesis
bacilysin biosynthesis
-
-
alkane biosynthesis I
-
-
PWY-7032
cuticular wax biosynthesis
-
-
PWY-282
Cutin, suberine and wax biosynthesis
-
00073
-
heptadecane biosynthesis
-
-
PWY-6622
1-butanol autotrophic biosynthesis (engineered)
-
-
PWY-6886
ethylene biosynthesis V (engineered)
-
-
PWY-7124
gluconeogenesis II (Methanobacterium thermoautotrophicum)
-
-
PWY-6142
glycolysis V (Pyrococcus)
-
-
P341-PWY
photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
-
-
PWY-7218
Rubisco shunt
-
-
PWY-5723
homocysteine and cysteine interconversion
-
-
PWY-801
hydrogen sulfide biosynthesis II (mammalian)
-
-
PWY66-426
L-cysteine biosynthesis III (from L-homocysteine)
-
-
HOMOCYSDEGR-PWY
L-cysteine biosynthesis VI (from L-methionine)
-
-
PWY-I9
cysteine metabolism
cysteine metabolism
-
-
L-glutamate degradation VI (to pyruvate)
-
-
PWY-5087
glutamate and glutamine metabolism
glutamate and glutamine metabolism
-
-
Histidine metabolism
-
00340
-
L-histidine degradation I
-
-
HISDEG-PWY
L-histidine degradation II
-
-
PWY-5028
L-histidine degradation III
-
-
PWY-5030
L-histidine degradation VI
-
-
HISHP-PWY
histidine metabolism
histidine metabolism
-
-
benzoate biosynthesis II (CoA-independent, non-beta-oxidative)
-
-
PWY-6444
cinnamoyl-CoA biosynthesis
-
-
PWY-6457
ephedrine biosynthesis
-
-
PWY-5883
phenylpropanoid biosynthesis, initial reactions
-
-
PWY1F-467
rosmarinic acid biosynthesis I
-
-
PWY-5048
phenylpropanoid biosynthesis
phenylpropanoid biosynthesis
-
-
suberin monomers biosynthesis
suberin monomers biosynthesis
-
-
autoinducer AI-2 biosynthesis I
-
-
PWY-6153
autoinducer AI-2 biosynthesis II (Vibrio)
-
-
PWY-6154
S-adenosyl-L-methionine cycle I
-
-
PWY-6151
Chloroalkane and chloroalkene degradation
-
00625
-
beta-(1,4)-mannan degradation
-
-
PWY-7456
beta-1,4-D-mannosyl-N-acetyl-D-glucosamine degradation
-
-
PWY-7586
D-mannose degradation
-
-
MANNCAT-PWY
Fructose and mannose metabolism
-
00051
-
GDP-mannose biosynthesis
-
-
PWY-5659
L-ascorbate biosynthesis I (L-galactose pathway)
-
-
PWY-882
mannitol biosynthesis
-
-
PWY-3881
mannitol degradation II
-
-
PWY-3861
d-mannose degradation
d-mannose degradation
-
-
beta-Alanine metabolism
-
00410
-
phosphopantothenate biosynthesis I
-
-
PANTO-PWY
pantothenate biosynthesis
pantothenate biosynthesis
-
-
Biotin metabolism
-
00780
-
biotin-carboxyl carrier protein assembly
-
-
PWY0-1264
biotin biosynthesis
biotin biosynthesis
-
-
Aflatoxin biosynthesis
-
00254
-
Fatty acid biosynthesis
-
00061
-
jadomycin biosynthesis
-
-
PWY-6679
octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
-
-
PWY-7388
Propanoate metabolism
-
00640
-
CO2 fixation in Crenarchaeota
CO2 fixation in Crenarchaeota
-
-
aerobic respiration I (cytochrome c)
-
-
PWY-3781
aerobic respiration III (alternative oxidase pathway)
-
-
PWY-4302
Fe(II) oxidation
-
-
PWY-6692
NADH to cytochrome bd oxidase electron transfer I
-
-
PWY0-1334
NADH to cytochrome bo oxidase electron transfer I
-
-
PWY0-1335
Oxidative phosphorylation
-
00190
-
ORGANISM
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LITERATURE
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SEQUENCE DB
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LOCALIZATION
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UNIPROT
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LITERATURE
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LINKS TO OTHER DATABASES (specific for Photorhabdus luminescens)