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Organism related
Word Map for Organism Methylorubrum extorquens AM1
- Methylorubrum extorquens AM1
- methylamine
- formaldehyde
- glyoxylate
- pqq
- tetrahydromethanopterin
- ethylmalonyl-coa
- tetrahydrofolate
- pyrroloquinoline
-
methylotrophy
- methylophilus
-
one-carbon
- lanthanide
-
amicyanin
-
single-carbon
-
azurins
-
lanthanide-dependent
-
xoxfs
-
madhs
-
hydroxypyruvate
TaxTree of Organism Methylorubrum extorquens AM1
Condensed Tree View
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PATHWAY 
BRENDA Link
KEGG Link
MetaCyc Link
(4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase)
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-
PWY-7726
(8E,10E)-dodeca-8,10-dienol biosynthesis
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-
PWY-7654
(R)- and (S)-3-hydroxybutanoate biosynthesis (engineered)
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-
PWY-7216
(S)-lactate fermentation to propanoate, acetate and hydrogen
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-
PWY-8086
(S)-propane-1,2-diol degradation
-
-
PWY-7013
1,2-dichloroethane degradation
-
-
12DICHLORETHDEG-PWY
1-butanol autotrophic biosynthesis (engineered)
-
-
PWY-6886
10-cis-heptadecenoyl-CoA degradation (yeast)
-
-
PWY-7337
10-trans-heptadecenoyl-CoA degradation (MFE-dependent, yeast)
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-
PWY-7339
10-trans-heptadecenoyl-CoA degradation (reductase-dependent, yeast)
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-
PWY-7338
2-deoxy-D-ribose degradation II
-
-
PWY-8058
2-methyl-branched fatty acid beta-oxidation
-
-
PWY-8181
2-methylpropene degradation
-
-
PWY-7778
2-nitrotoluene degradation
-
-
PWY-5641
2-oxoglutarate decarboxylation to succinyl-CoA
-
-
PWY-5084
3-hydroxypropanoate cycle
-
-
PWY-5743
3-hydroxypropanoate/4-hydroxybutanate cycle
-
-
PWY-5789
3-methylbutanol biosynthesis (engineered)
-
-
PWY-6871
3-phenylpropanoate degradation
-
-
P281-PWY
3PG-factor 420 biosynthesis
-
-
PWY-8113
4-ethylphenol degradation (anaerobic)
-
-
PWY-6080
4-hydroxybenzoate biosynthesis III (plants)
-
-
PWY-6435
4-oxopentanoate degradation
-
-
PWY-7948
6-gingerol analog biosynthesis (engineered)
-
-
PWY-6920
9-cis, 11-trans-octadecadienoyl-CoA degradation (isomerase-dependent, yeast)
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PWY-7340
ABH and Lewis epitopes biosynthesis from type 1 precursor disaccharide
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-
PWY-7832
ABH and Lewis epitopes biosynthesis from type 2 precursor disaccharide
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-
PWY-7831
acetaldehyde biosynthesis I
-
-
PWY-6333
acetate and ATP formation from acetyl-CoA III
-
-
PWY-8328
acetate conversion to acetyl-CoA
-
-
PWY0-1313
acetoacetate degradation (to acetyl CoA)
-
-
ACETOACETATE-DEG-PWY
acetyl-CoA fermentation to butanoate
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-
PWY-5676
acetylene degradation (anaerobic)
-
-
P161-PWY
adlupulone and adhumulone biosynthesis
-
-
PWY-7857
aerobic respiration I (cytochrome c)
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-
PWY-3781
aerobic respiration II (cytochrome c) (yeast)
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-
PWY-7279
aerobic respiration III (alternative oxidase pathway)
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PWY-4302
alliin metabolism
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-
PWY-5706
ammonia oxidation I (aerobic)
-
-
AMMOXID-PWY
ammonia oxidation III
-
-
PWY-2242
anaerobic energy metabolism (invertebrates, cytosol)
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-
PWY-7383
anaerobic energy metabolism (invertebrates, mitochondrial)
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PWY-7384
androstenedione degradation I (aerobic)
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-
PWY-6944
androstenedione degradation II (anaerobic)
-
-
PWY-8152
apratoxin A biosynthesis
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-
PWY-8361
arsenite to oxygen electron transfer
-
-
PWY-4521
arsenite to oxygen electron transfer (via azurin)
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-
PWY-7429
bacterial bioluminescence
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-
PWY-7723
benzoate biosynthesis I (CoA-dependent, beta-oxidative)
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-
PWY-6443
benzoyl-CoA biosynthesis
-
-
PWY-6458
Bifidobacterium shunt
-
-
P124-PWY
butanol and isobutanol biosynthesis (engineered)
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-
PWY-7396
C4 photosynthetic carbon assimilation cycle, NAD-ME type
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-
PWY-7115
C4 photosynthetic carbon assimilation cycle, NADP-ME type
-
-
PWY-241
C4 photosynthetic carbon assimilation cycle, PEPCK type
-
-
PWY-7117
Calvin-Benson-Bassham cycle
-
-
CALVIN-PWY
catechol degradation to 2-hydroxypentadienoate I
-
-
P183-PWY
catechol degradation to 2-hydroxypentadienoate II
-
-
PWY-5419
catechol degradation to beta-ketoadipate
-
-
CATECHOL-ORTHO-CLEAVAGE-PWY
chitin deacetylation
-
-
PWY-7118
cholesterol degradation to androstenedione I (cholesterol oxidase)
-
-
PWY-6945
cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
-
-
PWY-6946
cis-geranyl-CoA degradation
-
-
PWY-6672
CMP-legionaminate biosynthesis I
-
-
PWY-6749
CO2 fixation into oxaloacetate (anaplerotic)
-
-
PWYQT-4429
colupulone and cohumulone biosynthesis
-
-
PWY-5133
conversion of succinate to propanoate
-
-
PWY0-43
crotonate fermentation (to acetate and cyclohexane carboxylate)
-
-
PWY-7401
crotonyl-CoA/ethylmalonyl-CoA/hydroxybutyryl-CoA cycle (engineered)
-
-
PWY-7854
curacin A biosynthesis
-
-
PWY-8358
cutin biosynthesis
-
-
PWY-321
cytosolic NADPH production (yeast)
-
-
PWY-7268
D-xylose degradation IV
-
-
PWY-7294
diethylphosphate degradation
-
-
PWY-5491
diploterol biosynthesis
-
-
PWY-6098
docosahexaenoate biosynthesis III (6-desaturase, mammals)
-
-
PWY-7606
dTMP de novo biosynthesis (mitochondrial)
-
-
PWY66-385
Entner-Doudoroff pathway I
-
-
PWY-8004
Entner-Doudoroff pathway II (non-phosphorylative)
-
-
NPGLUCAT-PWY
Entner-Doudoroff pathway III (semi-phosphorylative)
-
-
PWY-2221
ethanol degradation I
-
-
ETOH-ACETYLCOA-ANA-PWY
ethanol degradation II
-
-
PWY66-21
ethanol degradation III
-
-
PWY66-161
ethanol degradation IV
-
-
PWY66-162
ethanolamine utilization
-
-
PWY0-1477
ethene biosynthesis V (engineered)
-
-
PWY-7124
ethylbenzene degradation (anaerobic)
-
-
PWY-481
ethylmalonyl-CoA pathway
factor 420 biosynthesis I (archaea)
-
-
PWY-8112
factor 420 biosynthesis II (mycobacteria)
-
-
PWY-5198
fatty acid beta-oxidation I (generic)
-
-
FAO-PWY
fatty acid beta-oxidation II (plant peroxisome)
-
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PWY-5136
fatty acid beta-oxidation IV (unsaturated, even number)
-
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PWY-5138
fatty acid beta-oxidation VI (mammalian peroxisome)
-
-
PWY66-391
fatty acid beta-oxidation VII (yeast peroxisome)
-
-
PWY-7288
fatty acid salvage
-
-
PWY-7094
Fe(II) oxidation
-
-
PWY-6692
ferrichrome A biosynthesis
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-
PWY-7571
folate polyglutamylation
folate transformations I
-
-
PWY-2201
folate transformations II (plants)
-
-
PWY-3841
folate transformations III (E. coli)
-
-
1CMET2-PWY
formaldehyde assimilation I (serine pathway)
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-
PWY-1622
formaldehyde assimilation III (dihydroxyacetone cycle)
-
-
P185-PWY
formaldehyde oxidation I
-
-
RUMP-PWY
formaldehyde oxidation IV (thiol-independent)
-
-
FORMASS-PWY
formaldehyde oxidation VI (H4MPT pathway)
-
-
PWY-1723
formaldehyde oxidation VII (THF pathway)
-
-
PWY-7909
formate assimilation into 5,10-methylenetetrahydrofolate
-
-
PWY-1722
formate oxidation to CO2
-
-
PWY-1881
GABA shunt I
-
-
GLUDEG-I-PWY
GABA shunt II
-
-
PWY-8346
gamma-hexachlorocyclohexane degradation
-
-
GAMMAHEXCHLORDEG-PWY
gluconeogenesis I
-
-
GLUCONEO-PWY
gluconeogenesis II (Methanobacterium thermoautotrophicum)
-
-
PWY-6142
gluconeogenesis III
-
-
PWY66-399
glucose and glucose-1-phosphate degradation
-
-
GLUCOSE1PMETAB-PWY
glucose degradation (oxidative)
-
-
DHGLUCONATE-PYR-CAT-PWY
glutaryl-CoA degradation
-
-
PWY-5177
glycerol degradation III
-
-
PWY-6130
glycerol degradation to butanol
-
-
PWY-7003
glycerol-3-phosphate to fumarate electron transfer
-
-
PWY0-1582
glycine betaine degradation I
-
-
PWY-3661
glycine betaine degradation II (mammalian)
-
-
PWY-3661-1
glycine betaine degradation III
-
-
PWY-8325
glycine biosynthesis I
-
-
GLYSYN-PWY
glycine biosynthesis III
-
-
GLYSYN-ALA-PWY
glycolate and glyoxylate degradation II
-
-
GLYOXDEG-PWY
glycolysis I (from glucose 6-phosphate)
-
-
GLYCOLYSIS
glycolysis II (from fructose 6-phosphate)
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PWY-5484
glycolysis III (from glucose)
-
-
ANAGLYCOLYSIS-PWY
glycolysis IV
-
-
PWY-1042
glycolysis V (Pyrococcus)
-
-
P341-PWY
glyoxylate assimilation
-
-
PWY-5744
glyoxylate cycle
-
-
GLYOXYLATE-BYPASS
heterolactic fermentation
-
-
P122-PWY
homospermidine biosynthesis I
-
-
PWY-5907
homospermidine biosynthesis II
-
-
PWY-8149
hopanoid biosynthesis (bacteria)
-
-
PWY-7072
hydrogen to fumarate electron transfer
-
-
PWY0-1576
incomplete reductive TCA cycle
-
-
P42-PWY
indole-3-acetate biosynthesis VI (bacteria)
-
-
TRPIAACAT-PWY
isoprene biosynthesis II (engineered)
-
-
PWY-7391
isopropanol biosynthesis (engineered)
-
-
PWY-6876
itaconate biosynthesis I
-
-
PWY-5750
itaconate degradation
-
-
PWY-5749
jasmonic acid biosynthesis
-
-
PWY-735
ketogenesis
-
-
PWY66-367
ketolysis
-
-
PWY66-368
L-alanine degradation II (to D-lactate)
-
-
ALACAT2-PWY
L-alanine degradation VI (reductive Stickland reaction)
-
-
PWY-8188
L-arabinose degradation IV
-
-
PWY-7295
L-ascorbate biosynthesis VIII (engineered pathway)
-
-
PWY-7165
L-carnitine degradation II
-
-
PWY-3641
L-cysteine biosynthesis IX (Trichomonas vaginalis)
-
-
PWY-8010
L-glutamate degradation IX (via 4-aminobutanoate)
-
-
PWY0-1305
L-glutamate degradation V (via hydroxyglutarate)
-
-
P162-PWY
L-histidine degradation III
-
-
PWY-5030
L-histidine degradation V
-
-
PWY-5031
L-homocysteine biosynthesis
-
-
PWY-5344
L-isoleucine biosynthesis I (from threonine)
-
-
ILEUSYN-PWY
L-isoleucine biosynthesis II
-
-
PWY-5101
L-isoleucine biosynthesis III
-
-
PWY-5103
L-isoleucine biosynthesis IV
-
-
PWY-5104
L-isoleucine biosynthesis V
-
-
PWY-5108
L-isoleucine degradation I
-
-
ILEUDEG-PWY
L-isoleucine degradation II
-
-
PWY-5078
L-leucine degradation III
-
-
PWY-5076
L-lysine fermentation to acetate and butanoate
-
-
P163-PWY
L-malate degradation II
-
-
PWY-7686
L-methionine degradation III
-
-
PWY-5082
L-phenylalanine degradation III
-
-
PWY-5079
L-serine biosynthesis I
-
-
SERSYN-PWY
L-serine biosynthesis II
-
-
PWY-8011
L-tryptophan degradation V (side chain pathway)
-
-
PWY-3162
L-tryptophan degradation VIII (to tryptophol)
-
-
PWY-5081
L-tyrosine degradation III
-
-
PWY3O-4108
L-valine biosynthesis
-
-
VALSYN-PWY
L-valine degradation II
-
-
PWY-5057
linezolid resistance
-
-
PWY-6828
long chain fatty acid ester synthesis (engineered)
-
-
PWY-6873
lupulone and humulone biosynthesis
-
-
PWY-5132
malate/L-aspartate shuttle pathway
-
-
MALATE-ASPARTATE-SHUTTLE-PWY
Methanobacterium thermoautotrophicum biosynthetic metabolism
-
-
PWY-6146
methanogenesis from H2 and CO2
-
-
METHANOGENESIS-PWY
methanogenesis from methoxylated aromatic compounds
-
-
PWY-8304
methanol oxidation to carbon dioxide
-
-
PWY-7616
methanol oxidation to formaldehyde I
-
-
PWY-6966
methanol oxidation to formaldehyde II
-
-
PWY-6510
methanol oxidation to formaldehyde IV
-
-
PWY-5506
methiin metabolism
-
-
PWY-7614
methoxylated aromatic compound degradation II
-
-
PWY-8305
methyl tert-butyl ether degradation
-
-
PWY-7779
methyl-coenzyme M oxidation to CO2
-
-
PWY-5209
methylamine degradation I
-
-
PWY-6967
methylamine degradation II
-
-
PWY-6965
methylaspartate cycle
mevalonate pathway I (eukaryotes and bacteria)
-
-
PWY-922
mevalonate pathway II (haloarchaea)
-
-
PWY-6174
mevalonate pathway III (Thermoplasma)
-
-
PWY-7524
mevalonate pathway IV (archaea)
-
-
PWY-8125
mixed acid fermentation
-
-
FERMENTATION-PWY
mycolate biosynthesis
-
-
PWYG-321
mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
-
-
PWY-6397
NAD(P)/NADPH interconversion
-
-
PWY-5083
NADH to cytochrome bd oxidase electron transfer I
-
-
PWY0-1334
NADH to cytochrome bo oxidase electron transfer I
-
-
PWY0-1335
NADH to fumarate electron transfer
-
-
PWY0-1336
NADPH to cytochrome c oxidase via plastocyanin
-
-
PWY-8271
nitrifier denitrification
-
-
PWY-7084
nitrogen remobilization from senescing leaves
-
-
PWY-6549
nocardicin A biosynthesis
-
-
PWY-7797
noradrenaline and adrenaline degradation
-
-
PWY-6342
O-antigen building blocks biosynthesis (E. coli)
-
-
OANTIGEN-PWY
oleandomycin activation/inactivation
-
-
PWY-6972
oleate beta-oxidation
-
-
PWY0-1337
oleate biosynthesis II (animals and fungi)
-
-
PWY-5996
oxalate degradation II
-
-
PWY-6695
oxalate degradation III
-
-
PWY-6696
oxalate degradation VI
-
-
PWY-7985
partial TCA cycle (obligate autotrophs)
-
-
PWY-5913
pentose phosphate pathway (oxidative branch) I
-
-
OXIDATIVEPENT-PWY
phenylethanol biosynthesis
-
-
PWY-5751
phenylmercury acetate degradation
phosphatidate metabolism, as a signaling molecule
-
-
PWY-7039
phosphopantothenate biosynthesis I
-
-
PANTO-PWY
photorespiration I
-
-
PWY-181
photorespiration II
-
-
PWY-8362
photorespiration III
-
-
PWY-8363
photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
-
-
PWY-7218
phytol degradation
-
-
PWY66-389
platensimycin biosynthesis
-
-
PWY-8179
polyhydroxybutanoate biosynthesis
-
-
PWY1-3
polyhydroxydecanoate biosynthesis
-
-
PWY-6657
propanethial S-oxide biosynthesis
-
-
PWY-5707
propanoate fermentation to 2-methylbutanoate
-
-
PWY-5109
propanoyl CoA degradation I
-
-
PROPIONMET-PWY
purine nucleobases degradation I (anaerobic)
-
-
P164-PWY
purine nucleobases degradation II (anaerobic)
-
-
PWY-5497
pyrroloquinoline quinone biosynthesis
-
-
PWY-6420
pyruvate decarboxylation to acetyl CoA II
-
-
PWY-6970
pyruvate fermentation to (R)-acetoin I
-
-
PWY-5938
pyruvate fermentation to (R)-acetoin II
-
-
PWY-5939
pyruvate fermentation to (R)-lactate
-
-
PWY-8274
pyruvate fermentation to (S)-acetoin
-
-
PWY-6389
pyruvate fermentation to (S)-lactate
-
-
PWY-5481
pyruvate fermentation to acetone
-
-
PWY-6588
pyruvate fermentation to butanoate
-
-
CENTFERM-PWY
pyruvate fermentation to butanol I
-
-
PWY-6583
pyruvate fermentation to butanol II (engineered)
-
-
PWY-6883
pyruvate fermentation to ethanol I
-
-
PWY-5480
pyruvate fermentation to ethanol II
-
-
PWY-5486
pyruvate fermentation to ethanol III
-
-
PWY-6587
pyruvate fermentation to hexanol (engineered)
-
-
PWY-6863
pyruvate fermentation to isobutanol (engineered)
-
-
PWY-7111
pyruvate fermentation to propanoate I
-
-
P108-PWY
reactive oxygen species degradation
-
-
DETOX1-PWY-1
reductive acetyl coenzyme A pathway I (homoacetogenic bacteria)
-
-
CODH-PWY
reductive acetyl coenzyme A pathway II (autotrophic methanogens)
-
-
PWY-7784
reductive glycine pathway of autotrophic CO2 fixation
-
-
PWY-8303
reductive TCA cycle I
-
-
P23-PWY
reductive TCA cycle II
-
-
PWY-5392
Rubisco shunt
-
-
PWY-5723
S-methyl-5-thio-alpha-D-ribose 1-phosphate degradation II
-
-
PWY-7174
S-methyl-5-thio-alpha-D-ribose 1-phosphate degradation III
-
-
PWY-8132
salidroside biosynthesis
-
-
PWY-6802
serotonin degradation
-
-
PWY-6313
sitosterol degradation to androstenedione
-
-
PWY-6948
sporopollenin precursors biosynthesis
-
-
PWY-6733
stearate biosynthesis I (animals)
-
-
PWY-5972
stearate biosynthesis III (fungi)
-
-
PWY3O-355
suberin monomers biosynthesis
-
-
PWY-1121
succinate to chytochrome c oxidase via cytochrome c6
-
-
PWY1YI0-2
succinate to cytochrome bd oxidase electron transfer
-
-
PWY0-1353
succinate to cytochrome bo oxidase electron transfer
-
-
PWY0-1329
succinate to cytochrome c oxidase via plastocyanin
-
-
PWY1YI0-3
succinate to plastoquinol oxidase
-
-
PWY1YI0-8
sucrose biosynthesis I (from photosynthesis)
-
-
SUCSYN-PWY
superoxide radicals degradation
-
-
DETOX1-PWY
superpathway of fermentation (Chlamydomonas reinhardtii)
-
-
PWY4LZ-257
superpathway of glucose and xylose degradation
-
-
PWY-6901
superpathway of glycolysis and the Entner-Doudoroff pathway
-
-
GLYCOLYSIS-E-D
superpathway of glyoxylate cycle and fatty acid degradation
-
-
PWY-561
superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
-
-
PWY-7328
TCA cycle I (prokaryotic)
-
-
TCA
TCA cycle II (plants and fungi)
-
-
PWY-5690
TCA cycle III (animals)
-
-
PWY66-398
TCA cycle IV (2-oxoglutarate decarboxylase)
-
-
P105-PWY
TCA cycle V (2-oxoglutarate synthase)
-
-
PWY-6969
TCA cycle VI (Helicobacter)
-
-
REDCITCYC
TCA cycle VII (acetate-producers)
-
-
PWY-7254
TCA cycle VIII (Chlamydia)
-
-
TCA-1
tetrahydrofolate biosynthesis I
-
-
PWY-6614
tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
-
-
PWY-6613
tetrahydromethanopterin biosynthesis
-
-
PWY-6148
thiamine diphosphate salvage II
-
-
PWY-6897
thiamine diphosphate salvage IV (yeast)
-
-
PWY-7356
thiamine phosphate formation from pyrithiamine and oxythiamine (yeast)
-
-
PWY-7357
toluene degradation II (aerobic) (via 4-methylcatechol)
-
-
TOLUENE-DEG-3-OH-PWY
toluene degradation to 2-hydroxypentadienoate (via toluene-cis-diol)
-
-
TOLUENE-DEG-DIOL-PWY
toluene degradation to 2-hydroxypentadienoate I (via o-cresol)
-
-
TOLUENE-DEG-2-OH-PWY
type I lipoteichoic acid biosynthesis (S. aureus)
-
-
PWY-7817
UDP-alpha-D-galactofuranose biosynthesis
-
-
PWY-7622
UDP-N-acetyl-D-galactosamine biosynthesis III
-
-
PWY-8013
UDP-N-acetyl-D-glucosamine biosynthesis I
-
-
UDPNAGSYN-PWY
UDP-N-acetyl-D-glucosamine biosynthesis II
-
-
UDPNACETYLGALSYN-PWY
valproate beta-oxidation
-
-
PWY-8182
vancomycin resistance I
-
-
PWY-6454
vitamin K-epoxide cycle
xyloglucan degradation II (exoglucanase)
-
-
PWY-6807
ethylmalonyl-CoA pathway
-
-
PWY-5741
folate polyglutamylation
-
-
PWY-2161
methylaspartate cycle
-
-
PWY-6728
phenylmercury acetate degradation
-
-
P641-PWY
vitamin K-epoxide cycle
-
-
PWY-7999
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ORGANISM
COMMENTARY 
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
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SOURCE TISSUE
ORGANISM
UNIPROT
COMMENTARY
LITERATURE
SOURCE
LINKS TO OTHER DATABASES (specific for Methylorubrum extorquens AM1)
SILVA: 16S/18S rRNA, 23S/28S rRNA
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Release 2023.1 (January 2023)
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