Any feedback?
Please rate this page
(organism.php)
(0/150)

BRENDA support

Information on Organism Escherichia coli JM83

Synonyms:
Escherichia coli JM83;
TaxTree of Organism Escherichia coli JM83
Condensed Tree View
cellular organisms (cellular root)
Bacteria can be found in Brenda BRENDA pathways(domain)
Pseudomonadati can be found in Brenda (kingdom)
Pseudomonadota can be found in Brenda BRENDA pathways(phylum)
Gammaproteobacteria can be found in Brenda BRENDA pathways(class)
Enterobacterales can be found in Brenda BRENDA pathways(order)
Enterobacteriaceae can be found in Brenda BRENDA pathways(family)
Escherichia can be found in Brenda BRENDA pathways(genus)
Escherichia coli can be found in Brenda BRENDA pathways(species)
Escherichia coli JM83 can be found in Brenda
Please wait a moment until all data is loaded. This message will disappear when all data is loaded.
top print hide
top print hide
PATHWAY
BRENDA Link
KEGG Link
MetaCyc Link
(1,4)-beta-D-xylan degradation
-
-
PWY-6717
(S)-lactate fermentation to propanoate, acetate and hydrogen
-
-
PWY-8086
(S)-propane-1,2-diol degradation
-
-
PWY-7013
2-nitrotoluene degradation
-
-
PWY-5641
3-methylbutanol biosynthesis (engineered)
-
-
PWY-6871
acetaldehyde biosynthesis I
-
-
PWY-6333
acetylene degradation (anaerobic)
-
-
P161-PWY
aerobic respiration I (cytochrome c)
-
-
PWY-3781
aerobic respiration II (cytochrome c) (yeast)
-
-
PWY-7279
aerobic toluene degradation
-
-
agarose degradation
-
-
PWY-6816
alanine metabolism
-
-
Alanine, aspartate and glutamate metabolism
-
-
alginate degradation
-
-
PWY-6986
alpha-Linolenic acid metabolism
-
-
Amino sugar and nucleotide sugar metabolism
-
-
ammonia assimilation cycle I
-
-
PWY-6963
ammonia assimilation cycle II
-
-
PWY-6964
ammonia assimilation cycle III
-
-
AMMASSIM-PWY
anaerobic energy metabolism (invertebrates, cytosol)
-
-
PWY-7383
Arginine and proline metabolism
-
-
Arginine biosynthesis
-
-
arginine metabolism
-
-
arsenite to oxygen electron transfer
-
-
PWY-4521
arsenite to oxygen electron transfer (via azurin)
-
-
PWY-7429
Benzoate degradation
-
-
beta-Alanine metabolism
-
-
Bifidobacterium shunt
-
-
P124-PWY
Biosynthesis of secondary metabolites
-
-
butanol and isobutanol biosynthesis (engineered)
-
-
PWY-7396
C4 and CAM-carbon fixation
-
-
C4 photosynthetic carbon assimilation cycle, NAD-ME type
-
-
PWY-7115
C4 photosynthetic carbon assimilation cycle, NADP-ME type
-
-
PWY-241
C4 photosynthetic carbon assimilation cycle, PEPCK type
-
-
PWY-7117
Carbapenem biosynthesis
-
-
Carbon fixation in photosynthetic organisms
-
-
Carbon fixation pathways in prokaryotes
-
-
catechol degradation to 2-hydroxypentadienoate I
-
-
P183-PWY
catechol degradation to 2-hydroxypentadienoate II
-
-
PWY-5419
cellulose degradation
-
-
cellulose degradation II (fungi)
-
-
PWY-6788
Chloroalkane and chloroalkene degradation
-
-
Chlorocyclohexane and chlorobenzene degradation
-
-
Citrate cycle (TCA cycle)
-
-
citric acid cycle
-
-
Cysteine and methionine metabolism
-
-
d-xylose degradation
-
-
degradation of pentoses
-
-
diethylphosphate degradation
-
-
PWY-5491
Drug metabolism - cytochrome P450
-
-
Drug metabolism - other enzymes
-
-
ethanol degradation I
-
-
ETOH-ACETYLCOA-ANA-PWY
ethanol degradation II
-
-
PWY66-21
ethanol fermentation
-
-
ethanolamine utilization
-
-
PWY0-1477
Fatty acid degradation
-
-
Fe(II) oxidation
-
-
PWY-6692
Folate biosynthesis
-
-
folate polyglutamylation
folate transformations I
-
-
PWY-2201
folate transformations II (plants)
-
-
PWY-3841
formaldehyde assimilation I (serine pathway)
-
-
PWY-1622
formaldehyde oxidation
-
-
formaldehyde oxidation II (glutathione-dependent)
-
-
PWY-1801
formate assimilation into 5,10-methylenetetrahydrofolate
-
-
PWY-1722
Fructose and mannose metabolism
-
-
Galactose metabolism
-
-
gluconeogenesis
-
-
gluconeogenesis I
-
-
GLUCONEO-PWY
gluconeogenesis III
-
-
PWY66-399
glutamate and glutamine metabolism
-
-
Glycerolipid metabolism
-
-
Glycerophospholipid metabolism
-
-
Glycine, serine and threonine metabolism
-
-
glycogen degradation I
-
-
GLYCOCAT-PWY
glycogen metabolism
-
-
Glycolysis / Gluconeogenesis
-
-
Glycosaminoglycan degradation
-
-
Glycosphingolipid biosynthesis - ganglio series
-
-
Glyoxylate and dicarboxylate metabolism
-
-
glyoxylate cycle
-
-
GLYOXYLATE-BYPASS
heme b biosynthesis I (aerobic)
-
-
HEME-BIOSYNTHESIS-II
heme b biosynthesis II (oxygen-independent)
-
-
HEMESYN2-PWY
heme b biosynthesis V (aerobic)
-
-
HEME-BIOSYNTHESIS-II-1
heme metabolism
-
-
heterolactic fermentation
-
-
P122-PWY
incomplete reductive TCA cycle
-
-
P42-PWY
L-alanine degradation II (to D-lactate)
-
-
ALACAT2-PWY
L-alanine degradation VI (reductive Stickland reaction)
-
-
PWY-8188
L-aspartate degradation II (aerobic)
-
-
PWY-8291
L-aspartate degradation III (anaerobic)
-
-
PWY-8294
L-citrulline biosynthesis
-
-
CITRULBIO-PWY
L-glutamine biosynthesis I
-
-
GLNSYN-PWY
L-histidine degradation V
-
-
PWY-5031
L-isoleucine degradation II
-
-
PWY-5078
L-lactaldehyde degradation
-
-
L-leucine degradation III
-
-
PWY-5076
L-methionine degradation III
-
-
PWY-5082
L-Ndelta-acetylornithine biosynthesis
-
-
PWY-6922
L-ornithine biosynthesis II
-
-
ARGININE-SYN4-PWY
L-phenylalanine degradation III
-
-
PWY-5079
L-proline biosynthesis I (from L-glutamate)
-
-
PROSYN-PWY
L-tryptophan degradation V (side chain pathway)
-
-
PWY-3162
L-tyrosine degradation III
-
-
PWY3O-4108
L-valine degradation II
-
-
PWY-5057
lactate fermentation
-
-
leucine metabolism
-
-
lipid metabolism
-
-
malate/L-aspartate shuttle pathway
-
-
MALATE-ASPARTATE-SHUTTLE-PWY
Metabolic pathways
-
-
Metabolism of xenobiotics by cytochrome P450
-
-
Methane metabolism
-
-
methionine metabolism
-
-
methyl indole-3-acetate interconversion
-
-
PWY-6303
methylaspartate cycle
methylsalicylate degradation
-
-
PWY18C3-24
Microbial metabolism in diverse environments
-
-
mixed acid fermentation
-
-
FERMENTATION-PWY
NAD metabolism
-
-
NAD(P)/NADPH interconversion
-
-
PWY-5083
NADPH to cytochrome c oxidase via plastocyanin
-
-
PWY-8271
Naphthalene degradation
-
-
Nicotinate and nicotinamide metabolism
-
-
Nitrogen metabolism
-
-
noradrenaline and adrenaline degradation
-
-
PWY-6342
One carbon pool by folate
-
-
Other glycan degradation
-
-
Oxidative phosphorylation
-
-
oxidative phosphorylation
-
-
Pantothenate and CoA biosynthesis
-
-
pantothenate biosynthesis
-
-
Penicillin and cephalosporin biosynthesis
-
-
Peptidoglycan biosynthesis
-
-
peptidoglycan biosynthesis
-
-
peptidoglycan biosynthesis II (staphylococci)
-
-
PWY-5265
peptidoglycan biosynthesis IV (Enterococcus faecium)
-
-
PWY-6471
peptidoglycan biosynthesis V (beta-lactam resistance)
-
-
PWY-6470
peptidoglycan maturation (meso-diaminopimelate containing)
-
-
PWY0-1586
peptidoglycan recycling I
-
-
PWY0-1261
phenol degradation
-
-
phenylalanine metabolism
-
-
phenylethanol biosynthesis
-
-
PWY-5751
phosalacine biosynthesis
-
-
PWY-7769
phosphatidylcholine resynthesis via glycerophosphocholine
-
-
PWY-7367
phosphinothricin tripeptide biosynthesis
-
-
PWY-6322
phospholipid remodeling (phosphatidylethanolamine, yeast)
-
-
PWY-7409
Phosphonate and phosphinate metabolism
-
-
phosphopantothenate biosynthesis I
-
-
PANTO-PWY
photosynthesis
-
-
phytol degradation
-
-
PWY66-389
porphyran degradation
-
-
PWY-6815
Porphyrin metabolism
-
-
proline metabolism
-
-
Propanoate metabolism
-
-
propanol degradation
-
-
pyruvate fermentation to (R)-lactate
-
-
PWY-8274
pyruvate fermentation to (S)-lactate
-
-
PWY-5481
pyruvate fermentation to ethanol I
-
-
PWY-5480
pyruvate fermentation to ethanol II
-
-
PWY-5486
pyruvate fermentation to ethanol III
-
-
PWY-6587
pyruvate fermentation to isobutanol (engineered)
-
-
PWY-7111
pyruvate fermentation to propanoate I
-
-
P108-PWY
Pyruvate metabolism
-
-
reductive acetyl coenzyme A pathway
-
-
reductive acetyl coenzyme A pathway I (homoacetogenic bacteria)
-
-
CODH-PWY
reductive glycine pathway of autotrophic CO2 fixation
-
-
PWY-8303
reductive TCA cycle I
-
-
P23-PWY
reductive TCA cycle II
-
-
PWY-5392
retinol biosynthesis
-
-
PWY-6857
Retinol metabolism
-
-
salidroside biosynthesis
-
-
PWY-6802
serotonin degradation
-
-
PWY-6313
serotonin metabolism
-
-
Sphingolipid metabolism
-
-
Starch and sucrose metabolism
-
-
starch degradation
-
-
starch degradation I
-
-
PWY-842
Styrene degradation
-
-
succinate to chytochrome c oxidase via cytochrome c6
-
-
PWY1YI0-2
succinate to cytochrome c oxidase via plastocyanin
-
-
PWY1YI0-3
sulfopterin metabolism
-
-
superpathway of fermentation (Chlamydomonas reinhardtii)
-
-
PWY4LZ-257
superpathway of glucose and xylose degradation
-
-
PWY-6901
superpathway of glyoxylate cycle and fatty acid degradation
-
-
PWY-561
superpathway of methylsalicylate metabolism
-
-
PWY18C3-25
TCA cycle I (prokaryotic)
-
-
TCA
TCA cycle II (plants and fungi)
-
-
PWY-5690
TCA cycle III (animals)
-
-
PWY66-398
TCA cycle IV (2-oxoglutarate decarboxylase)
-
-
P105-PWY
TCA cycle V (2-oxoglutarate synthase)
-
-
PWY-6969
TCA cycle VIII (Chlamydia)
-
-
TCA-1
Thiamine metabolism
-
-
toluene degradation II (aerobic) (via 4-methylcatechol)
-
-
TOLUENE-DEG-3-OH-PWY
toluene degradation to 2-hydroxypentadienoate (via toluene-cis-diol)
-
-
TOLUENE-DEG-DIOL-PWY
toluene degradation to 2-hydroxypentadienoate I (via o-cresol)
-
-
TOLUENE-DEG-2-OH-PWY
triacylglycerol degradation
-
-
LIPAS-PWY
tRNA processing
-
-
PWY0-1479
Tyrosine metabolism
-
-
tyrosine metabolism
-
-
UDP-GlcNAc biosynthesis
-
-
UDP-N-acetyl-D-glucosamine biosynthesis I
-
-
UDPNAGSYN-PWY
valine metabolism
-
-
vancomycin resistance I
-
-
PWY-6454
Xylene degradation
-
-
xyloglucan degradation II (exoglucanase)
-
-
PWY-6807
top print hide
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
top
LINKS TO OTHER DATABASES (specific for Escherichia coli JM83)
NCBI: Taxonomy, PubMed, Genome
SILVA: 16S/18S rRNA, 23S/28S rRNA