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Organism related
Word Map for Organism Coptis japonica
- Coptis japonica
- obtusa
- cryptomeria
- berberine
- n-methyltransferase
- camellia
- cedar
- isoquinoline
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sugi
- charybdis
- corbicula
- coturnix
- chamaecyparis
-
benzylisoquinoline
- palmatine
-
eschscholzia
TaxTree of Organism Coptis japonica
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EC NUMBER 
COMMENTARY 
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PATHWAY
BRENDA Link
KEGG Link
MetaCyc Link
(-)-maackiain biosynthesis
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PWY-2464
(-)-medicarpin biosynthesis
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PWY-2463
(S)-lactate fermentation to propanoate, acetate and hydrogen
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PWY-8086
(S)-reticuline biosynthesis I
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PWY-3581
(S)-reticuline biosynthesis II
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PWY-6133
1,5-anhydrofructose degradation
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PWY-6992
1-methylpyrrolinium biosynthesis
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PWY-5315
11-oxyandrogens biosynthesis
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PWY-8202
2-arachidonoylglycerol biosynthesis
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PWY-8052
2-nitrotoluene degradation
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PWY-5641
3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent)
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CHLOROPHYLL-SYN
3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic)
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PWY-5531
3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent)
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PWY-7159
3-phosphoinositide biosynthesis
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PWY-6352
4-hydroxy-2-nonenal detoxification
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PWY-7112
acetone degradation I (to methylglyoxal)
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PWY-5451
acetone degradation III (to propane-1,2-diol)
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PWY-7466
aerobic respiration I (cytochrome c)
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PWY-3781
aerobic respiration II (cytochrome c) (yeast)
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PWY-7279
alanine racemization
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PWY-8072
alpha-carotene biosynthesis
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PWY-5946
alpha-tomatine degradation
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PWY18C3-5
Amaryllidacea alkaloids biosynthesis
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PWY-7826
ammonia assimilation cycle I
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PWY-6963
ammonia assimilation cycle II
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PWY-6964
ammonia assimilation cycle III
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AMMASSIM-PWY
ammonia oxidation I (aerobic)
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AMMOXID-PWY
ammonia oxidation III
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PWY-2242
anaerobic energy metabolism (invertebrates, cytosol)
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PWY-7383
ansatrienin biosynthesis
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PWY-8040
arachidonate metabolites biosynthesis
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PWY-8397
arsenite to oxygen electron transfer
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PWY-4521
arsenite to oxygen electron transfer (via azurin)
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PWY-7429
astaxanthin biosynthesis (bacteria, fungi, algae)
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PWY-5288
ATP biosynthesis
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PWY-7980
avenanthramide biosynthesis
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PWY-8157
bacilysin biosynthesis
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PWY-7626
berberine biosynthesis
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PWY-3901
beta-(1,4)-mannan degradation
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PWY-7456
beta-carotene biosynthesis
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PWY-5943
betalamic acid biosynthesis
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PWY-5394
Bifidobacterium shunt
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P124-PWY
bupropion degradation
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PWY66-241
C20 prostanoid biosynthesis
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PWY66-374
camalexin biosynthesis
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CAMALEXIN-SYN
capsaicin biosynthesis
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PWY-5710
catechol degradation to 2-hydroxypentadienoate I
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P183-PWY
catechol degradation to 2-hydroxypentadienoate II
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PWY-5419
catecholamine biosynthesis
cellulose degradation II (fungi)
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PWY-6788
chelerythrine biosynthesis
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PWY-7507
chitin degradation I (archaea)
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PWY-6855
chitin degradation II (Vibrio)
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PWY-6902
chitin degradation III (Serratia)
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PWY-7822
chlorobactene biosynthesis
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PWY-7939
chlorogenic acid biosynthesis I
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PWY-6039
coptisine biosynthesis
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PWY-8030
coumarin biosynthesis (via 2-coumarate)
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PWY-5176
coumarins biosynthesis (engineered)
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PWY-7398
crotonosine biosynthesis
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PWY-8100
curcuminoid biosynthesis
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PWY-6432
cyclic electron flow
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PWY-8270
D-arabinose degradation V
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PWY-8334
D-galactose degradation IV
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PWY-6693
dehydroscoulerine biosynthesis
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PWY-6337
detoxification of reactive carbonyls in chloroplasts
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PWY-6786
di-homo-gamma-linolenate metabolites biosynthesis
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PWY-8396
epiberberine biosynthesis
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PWY-8031
ergosterol biosynthesis II
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PWY-7154
ethanol degradation IV
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PWY66-162
ethene biosynthesis III (microbes)
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PWY-6854
Fe(II) oxidation
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PWY-6692
firefly bioluminescence
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PWY-7913
flexixanthin biosynthesis
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PWY-7947
fructan degradation
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PWY-862
gliotoxin biosynthesis
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PWY-7533
glucocorticoid biosynthesis
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PWY66-381
glutathione-mediated detoxification I
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PWY-4061
glutathione-mediated detoxification II
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PWY-6842
glutathione-peroxide redox reactions
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PWY-4081
heterolactic fermentation
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P122-PWY
hydroxycinnamic acid tyramine amides biosynthesis
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PWY-5474
icosapentaenoate metabolites biosynthesis
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PWY-8399
indole glucosinolate activation (intact plant cell)
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PWYQT-4477
isorenieratene biosynthesis I (actinobacteria)
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PWY-7938
L-alanine degradation I
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ALADEG-PWY
L-arabinose degradation II
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PWY-5515
L-aspartate degradation II (aerobic)
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PWY-8291
L-aspartate degradation III (anaerobic)
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PWY-8294
L-glutamine biosynthesis I
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GLNSYN-PWY
L-histidine degradation V
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PWY-5031
L-phenylalanine biosynthesis I
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PHESYN
L-phenylalanine biosynthesis II
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PWY-3462
L-phenylalanine degradation IV (mammalian, via side chain)
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PWY-6318
L-serine biosynthesis I
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SERSYN-PWY
L-tryptophan biosynthesis
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TRPSYN-PWY
L-tyrosine biosynthesis I
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TYRSYN
L-tyrosine biosynthesis II
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PWY-3461
L-tyrosine biosynthesis III
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PWY-6120
L-tyrosine degradation I
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TYRFUMCAT-PWY
leucodelphinidin biosynthesis
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PWY-5152
leucopelargonidin and leucocyanidin biosynthesis
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PWY1F-823
linamarin degradation
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PWY-3121
linustatin bioactivation
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PWY-7091
lotaustralin degradation
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PWY-6002
lutein biosynthesis
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PWY-5947
lychnose and isolychnose biosynthesis
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PWY-6524
magnoflorine biosynthesis
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PWY-5876
melatonin degradation I
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PWY-6398
methanofuran biosynthesis
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PWY-5254
methanol oxidation to formaldehyde IV
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PWY-5506
methylglyoxal degradation III
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PWY-5453
mineralocorticoid biosynthesis
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PWY66-382
morphine biosynthesis
mRNA capping I
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PWY-7375
myxol-2' fucoside biosynthesis
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PWY-6279
NADPH to cytochrome c oxidase via plastocyanin
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PWY-8271
neolinustatin bioactivation
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PWY-7092
nicotine degradation IV
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PWY66-201
nicotine degradation V
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PWY66-221
nitric oxide biosynthesis II (mammals)
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PWY-4983
noscapine biosynthesis
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PWY-7138
o-diquinones biosynthesis
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PWY-6752
octane oxidation
octopamine biosynthesis
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PWY-7297
okenone biosynthesis
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PWY-7591
oleandomycin activation/inactivation
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PWY-6972
palmatine biosynthesis
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PWY-5470
papaverine biosynthesis
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PWY-7363
pentachlorophenol degradation
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PCPDEG-PWY
phenylpropanoid biosynthesis
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PWY-361
phenylpropanoids methylation (ice plant)
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PWY-7498
phospholipases
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LIPASYN-PWY
photosynthesis light reactions
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PWY-101
plasmalogen biosynthesis I (aerobic)
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PWY-7782
plasmalogen degradation
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PWY-7783
plastoquinol-9 biosynthesis I
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PWY-1581
polymethylated quercetin biosynthesis
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PWY-7161
polymethylated quercetin glucoside biosynthesis I - quercetin series (Chrysosplenium)
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PWY-7150
pyruvate fermentation to (S)-lactate
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PWY-5481
reactive oxygen species degradation
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DETOX1-PWY-1
rosmarinic acid biosynthesis II
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PWY-5049
salidroside biosynthesis
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PWY-6802
salinosporamide A biosynthesis
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PWY-6627
sanguinarine and macarpine biosynthesis
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PWY-5287
scopoletin biosynthesis
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PWY-6792
stachyose biosynthesis
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PWY-5337
stellariose and mediose biosynthesis
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PWY-6525
sterol:steryl ester interconversion (yeast)
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PWY-7424
suberin monomers biosynthesis
succinate to chytochrome c oxidase via cytochrome c6
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PWY1YI0-2
succinate to cytochrome c oxidase via plastocyanin
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PWY1YI0-3
superoxide radicals degradation
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DETOX1-PWY
superpathway of glucose and xylose degradation
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PWY-6901
tetrapyrrole biosynthesis I (from glutamate)
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PWY-5188
toluene degradation II (aerobic) (via 4-methylcatechol)
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TOLUENE-DEG-3-OH-PWY
toluene degradation to 2-hydroxypentadienoate (via toluene-cis-diol)
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TOLUENE-DEG-DIOL-PWY
toluene degradation to 2-hydroxypentadienoate I (via o-cresol)
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TOLUENE-DEG-2-OH-PWY
vanillin biosynthesis I
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PWY-5665
vitamin E biosynthesis (tocopherols)
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PWY-1422
catecholamine biosynthesis
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PWY66-301
morphine biosynthesis
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PWY-5270
octane oxidation
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P221-PWY
suberin monomers biosynthesis
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PWY-1121
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ORGANISM
COMMENTARY
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
-
15190, 15192, 15193, 15194, 15195, 15232, 288659, 391075, 391077, 393236, 441451, 659190, 680879, 687805, 689501, 716518, 720655, 720882
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UniProt
transient RNA silencing of scoulerine 9-O-methyltransferase expression by double stranded RNA in Coptis japonica protoplasts
Uniprot
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SOURCE TISSUE
ORGANISM
UNIPROT
COMMENTARY
LITERATURE
SOURCE
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activity of high berberine-producing cells is higher than that of non-selected cells
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LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY
GeneOntology No.
LITERATURE
SOURCE
sequence contains a putative endoplasmic reticulum-localizing signal
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LINKS TO OTHER DATABASES (specific for Coptis japonica)
SILVA: 16S/18S rRNA, 23S/28S rRNA
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Release 2023.1 (January 2023)
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