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Information on Organism Bifidobacterium bifidum

TaxTree of Organism Bifidobacterium bifidum
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PATHWAY
BRENDA Link
KEGG Link
MetaCyc Link
(1,4)-beta-D-xylan degradation
-
-
PWY-6717
(3R)-N-[(2S)-1-hydroxy-6-[(3R)-3-isocyanobutanamido]hexan-2-yl]-3-isocyanobutanamide biosynthesis
-
-
PWY-8320
(R)-cysteate degradation
-
-
PWY-6642
(S)-lactate fermentation to propanoate, acetate and hydrogen
-
-
PWY-8086
(S)-propane-1,2-diol degradation
-
-
PWY-7013
(S)-reticuline biosynthesis
-
-
(S)-reticuline biosynthesis I
-
-
PWY-3581
1,3-dimethylbenzene degradation to 3-methylbenzoate
-
-
PWY-5428
1,4-dimethylbenzene degradation to 4-methylbenzoate
-
-
PWY-5429
1-butanol autotrophic biosynthesis (engineered)
-
-
PWY-6886
2,5-xylenol and 3,5-xylenol degradation
-
-
PWY-7698
2-arachidonoylglycerol biosynthesis
-
-
PWY-8052
2-methyl-branched fatty acid beta-oxidation
-
-
PWY-8181
3-(4-hydroxyphenyl)pyruvate biosynthesis
-
-
PWY-5886
3-chlorotoluene degradation II
-
-
PWY-6104
4-hydroxy-2-nonenal detoxification
-
-
PWY-7112
4-hydroxybenzoate biosynthesis I (eukaryotes)
-
-
PWY-5754
4-oxopentanoate degradation
-
-
PWY-7948
6-gingerol analog biosynthesis (engineered)
-
-
PWY-6920
ABH and Lewis epitopes biosynthesis from type 1 precursor disaccharide
-
-
PWY-7832
acrylonitrile degradation I
-
-
PWY-7308
aerobic respiration I (cytochrome c)
-
-
PWY-3781
aerobic respiration II (cytochrome c) (yeast)
-
-
PWY-7279
aerobic toluene degradation
-
-
Aflatoxin biosynthesis
-
-
alanine metabolism
-
-
Alanine, aspartate and glutamate metabolism
-
-
alpha-linolenate metabolites biosynthesis
-
-
PWY-8398
alpha-Linolenic acid metabolism
-
-
alpha-tomatine degradation
-
-
PWY18C3-5
Amino sugar and nucleotide sugar metabolism
-
-
Aminobenzoate degradation
-
-
ammonia assimilation cycle I
-
-
PWY-6963
ammonia assimilation cycle II
-
-
PWY-6964
ammonia assimilation cycle III
-
-
AMMASSIM-PWY
ammonia oxidation II (anaerobic)
-
-
P303-PWY
anaerobic energy metabolism (invertebrates, cytosol)
-
-
PWY-7383
anandamide biosynthesis I
-
-
PWY-8051
anandamide biosynthesis II
-
-
PWY-8053
arachidonate metabolites biosynthesis
-
-
PWY-8397
Arachidonic acid metabolism
-
-
arachidonic acid metabolism
-
-
Arginine and proline metabolism
-
-
Arginine biosynthesis
-
-
arginine metabolism
-
-
arsenite to oxygen electron transfer
-
-
PWY-4521
arsenite to oxygen electron transfer (via azurin)
-
-
PWY-7429
Ascorbate and aldarate metabolism
-
-
ascorbate metabolism
-
-
aspartate and asparagine metabolism
-
-
aspirin triggered resolvin D biosynthesis
-
-
PWY66-395
aspirin triggered resolvin E biosynthesis
-
-
PWY66-394
Atrazine degradation
-
-
atromentin biosynthesis
-
-
PWY-7518
bacterial bioluminescence
-
-
PWY-7723
beta-D-glucuronide and D-glucuronate degradation
-
-
PWY-7247
Betalain biosynthesis
-
-
Bifidobacterium shunt
-
-
P124-PWY
bile acid biosynthesis, neutral pathway
-
-
bile acids deconjugation
-
-
PWY-8135
biosynthesis of Lewis epitopes (H. pylori)
-
-
PWY-7833
Biosynthesis of secondary metabolites
-
-
Biosynthesis of unsaturated fatty acids
-
-
bryostatin biosynthesis
-
-
PWY-8047
Butanoate metabolism
-
-
C20 prostanoid biosynthesis
-
-
PWY66-374
C4 and CAM-carbon fixation
-
-
C4 photosynthetic carbon assimilation cycle, NAD-ME type
-
-
PWY-7115
C4 photosynthetic carbon assimilation cycle, PEPCK type
-
-
PWY-7117
camalexin biosynthesis
-
-
CAMALEXIN-SYN
cannabinoid biosynthesis
-
-
PWY-5140
Caprolactam degradation
-
-
Carbon fixation in photosynthetic organisms
-
-
Carbon fixation pathways in prokaryotes
-
-
cellulose and hemicellulose degradation (cellulolosome)
-
-
PWY-6784
cellulose degradation
-
-
cellulose degradation II (fungi)
-
-
PWY-6788
chitin derivatives degradation
-
-
PWY-6906
chlorate reduction
-
-
PWY-6529
chlorogenic acid degradation
-
-
PWY-6781
CMP-legionaminate biosynthesis I
-
-
PWY-6749
CO2 fixation in Crenarchaeota
-
-
coenzyme M biosynthesis
-
-
coenzyme M biosynthesis II
-
-
PWY-6643
colanic acid building blocks biosynthesis
-
-
COLANSYN-PWY
coumarin biosynthesis (via 2-coumarate)
-
-
PWY-5176
cutin biosynthesis
-
-
PWY-321
Cyanoamino acid metabolism
-
-
Cysteine and methionine metabolism
-
-
cysteine metabolism
-
-
D-Amino acid metabolism
-
-
D-galactosamine and N-acetyl-D-galactosamine degradation
-
-
PWY-7395
D-galactose degradation I (Leloir pathway)
-
-
PWY-6317
D-galactose detoxification
-
-
PWY-3821
d-xylose degradation
-
-
degradation of aromatic, nitrogen containing compounds
-
-
degradation of hexoses
-
-
degradation of sugar acids
-
-
denitrification
-
-
di-homo-gamma-linolenate metabolites biosynthesis
-
-
PWY-8396
diethylphosphate degradation
-
-
PWY-5491
docosahexaenoate metabolites biosynthesis
-
-
PWY-8400
Drug metabolism - cytochrome P450
-
-
Drug metabolism - other enzymes
-
-
Entner Doudoroff pathway
-
-
Entner-Doudoroff pathway I
-
-
PWY-8004
Entner-Doudoroff pathway II (non-phosphorylative)
-
-
NPGLUCAT-PWY
Entner-Doudoroff pathway III (semi-phosphorylative)
-
-
PWY-2221
Escherichia coli serotype O:127 O antigen biosynthesis
-
-
PWY-8231
Escherichia coli serotype O:86 O antigen biosynthesis
-
-
PWY-7290
ethanol degradation IV
-
-
PWY66-162
ethene biosynthesis III (microbes)
-
-
PWY-6854
ethene biosynthesis V (engineered)
-
-
PWY-7124
Ether lipid metabolism
-
-
Fatty acid biosynthesis
-
-
fatty acid biosynthesis initiation (mitochondria)
-
-
PWY66-429
fatty acid biosynthesis initiation (plant mitochondria)
-
-
PWY-6799
fatty acid biosynthesis initiation (type I)
-
-
PWY-5966-1
fatty acid biosynthesis initiation (type II)
-
-
PWY-4381
Fatty acid elongation
-
-
fatty acid salvage
-
-
PWY-7094
Fe(II) oxidation
-
-
PWY-6692
firefly bioluminescence
-
-
PWY-7913
Flavone and flavonol biosynthesis
-
-
Folate biosynthesis
-
-
formaldehyde assimilation I (serine pathway)
-
-
PWY-1622
formaldehyde assimilation II (assimilatory RuMP Cycle)
-
-
PWY-1861
formaldehyde assimilation III (dihydroxyacetone cycle)
-
-
P185-PWY
formaldehyde oxidation
-
-
formaldehyde oxidation II (glutathione-dependent)
-
-
PWY-1801
fructan biosynthesis
-
-
PWY-822
fructan degradation
-
-
PWY-862
Fructose and mannose metabolism
-
-
galactolipid biosynthesis I
-
-
PWY-401
Galactose metabolism
-
-
gamma-glutamyl cycle
-
-
PWY-4041
ginsenoside metabolism
-
-
gliotoxin biosynthesis
-
-
PWY-7533
gluconeogenesis
-
-
gluconeogenesis I
-
-
GLUCONEO-PWY
gluconeogenesis II (Methanobacterium thermoautotrophicum)
-
-
PWY-6142
gluconeogenesis III
-
-
PWY66-399
glucose and glucose-1-phosphate degradation
-
-
GLUCOSE1PMETAB-PWY
glucose degradation (oxidative)
-
-
DHGLUCONATE-PYR-CAT-PWY
glutamate and glutamine metabolism
-
-
glutaminyl-tRNAgln biosynthesis via transamidation
-
-
PWY-5921
Glutathione metabolism
-
-
glutathione metabolism
-
-
glutathione-mediated detoxification I
-
-
PWY-4061
glutathione-mediated detoxification II
-
-
PWY-6842
glutathione-peroxide redox reactions
-
-
PWY-4081
glycerol degradation to butanol
-
-
PWY-7003
Glycerolipid metabolism
-
-
Glycerophospholipid metabolism
-
-
glycogen biosynthesis
-
-
glycogen degradation I
-
-
GLYCOCAT-PWY
glycogen degradation II
-
-
PWY-5941
glycogen metabolism
-
-
glycolysis
-
-
Glycolysis / Gluconeogenesis
-
-
glycolysis I (from glucose 6-phosphate)
-
-
GLYCOLYSIS
glycolysis II (from fructose 6-phosphate)
-
-
PWY-5484
glycolysis III (from glucose)
-
-
ANAGLYCOLYSIS-PWY
glycolysis IV
-
-
PWY-1042
glycolysis V (Pyrococcus)
-
-
P341-PWY
Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
-
-
Glycosaminoglycan biosynthesis - heparan sulfate / heparin
-
-
Glycosaminoglycan degradation
-
-
glycosaminoglycan-protein linkage region biosynthesis
-
-
PWY-6557
Glycosphingolipid biosynthesis - ganglio series
-
-
Glycosphingolipid biosynthesis - globo and isoglobo series
-
-
Glycosphingolipid biosynthesis - lacto and neolacto series
-
-
Glyoxylate and dicarboxylate metabolism
-
-
heterolactic fermentation
-
-
P122-PWY
hypoglycin biosynthesis
-
-
PWY-5826
IAA biosynthesis
-
-
icosapentaenoate metabolites biosynthesis
-
-
PWY-8399
indole glucosinolate activation (intact plant cell)
-
-
PWYQT-4477
indole-3-acetate biosynthesis II
-
-
PWY-581
indole-3-acetate biosynthesis III (bacteria)
-
-
PWY-3161
indole-3-acetate biosynthesis IV (bacteria)
-
-
PWY-5025
indole-3-acetate biosynthesis VI (bacteria)
-
-
TRPIAACAT-PWY
Inositol phosphate metabolism
-
-
inulin degradation
-
-
PWY-8314
Isoquinoline alkaloid biosynthesis
-
-
jadomycin biosynthesis
-
-
PWY-6679
L-alanine biosynthesis II
-
-
ALANINE-SYN2-PWY
L-alanine degradation II (to D-lactate)
-
-
ALACAT2-PWY
L-alanine degradation III
-
-
ALANINE-DEG3-PWY
L-alanine degradation IV
-
-
PWY1-2
L-alanine degradation V (oxidative Stickland reaction)
-
-
PWY-8189
L-alanine degradation VI (reductive Stickland reaction)
-
-
PWY-8188
L-arginine degradation X (arginine monooxygenase pathway)
-
-
ARGDEG-V-PWY
L-ascorbate biosynthesis IV (animals, D-glucuronate pathway)
-
-
PWY3DJ-35471
L-ascorbate biosynthesis VI (plants, myo-inositol pathway)
-
-
PWY-8142
L-ascorbate biosynthesis VIII (engineered pathway)
-
-
PWY-7165
L-asparagine biosynthesis III (tRNA-dependent)
-
-
PWY490-4
L-asparagine degradation III (mammalian)
-
-
ASPARAGINE-DEG1-PWY-1
L-aspartate biosynthesis
-
-
ASPARTATESYN-PWY
L-aspartate degradation I
-
-
ASPARTATE-DEG1-PWY
L-aspartate degradation II (aerobic)
-
-
PWY-8291
L-aspartate degradation III (anaerobic)
-
-
PWY-8294
L-citrulline biosynthesis
-
-
CITRULBIO-PWY
L-dopa and L-dopachrome biosynthesis
-
-
PWY-6481
L-glutamate biosynthesis I
-
-
GLUTSYN-PWY
L-glutamate biosynthesis III
-
-
GLUTSYNIII-PWY
L-glutamate degradation II
-
-
GLUTDEG-PWY
L-glutamine biosynthesis I
-
-
GLNSYN-PWY
L-glutamine degradation I
-
-
GLUTAMINDEG-PWY
L-histidine degradation V
-
-
PWY-5031
L-lactaldehyde degradation
-
-
L-phenylalanine biosynthesis I
-
-
PHESYN
L-phenylalanine degradation II (anaerobic)
-
-
ANAPHENOXI-PWY
L-phenylalanine degradation III
-
-
PWY-5079
L-phenylalanine degradation IV (mammalian, via side chain)
-
-
PWY-6318
L-phenylalanine degradation VI (reductive Stickland reaction)
-
-
PWY-8014
L-tryptophan degradation IV (via indole-3-lactate)
-
-
TRPKYNCAT-PWY
L-tryptophan degradation VIII (to tryptophol)
-
-
PWY-5081
L-tryptophan degradation XIII (reductive Stickland reaction)
-
-
PWY-8017
L-tyrosine biosynthesis I
-
-
TYRSYN
L-tyrosine degradation I
-
-
TYRFUMCAT-PWY
L-tyrosine degradation II
-
-
PWY-5151
L-tyrosine degradation III
-
-
PWY3O-4108
L-tyrosine degradation IV (to 4-methylphenol)
-
-
PWY-7514
L-tyrosine degradation V (reductive Stickland reaction)
-
-
PWY-8016
lactate fermentation
-
-
lacto-series glycosphingolipids biosynthesis
-
-
PWY-7839
lactose degradation III
-
-
BGALACT-PWY
leukotriene biosynthesis
-
-
PWY66-375
linamarin degradation
-
-
PWY-3121
linoleate metabolites biosynthesis
-
-
PWY-8395
Linoleic acid metabolism
-
-
linustatin bioactivation
-
-
PWY-7091
lipid A biosynthesis
-
-
lipid IVA biosynthesis (2,3-diamino-2,3-dideoxy-D-glucopyranose-containing)
-
-
PWY2B4Q-4
lipid IVA biosynthesis (E. coli)
-
-
NAGLIPASYN-PWY
lipid IVA biosynthesis (generic)
-
-
PWY-8283
lipid IVA biosynthesis (H. pylori)
-
-
PWYI-14
lipid IVA biosynthesis (P. gingivalis)
-
-
PWY-8245
lipid IVA biosynthesis (P. putida)
-
-
PWY-8073
lipid IVA biosynthesis (Vibrio cholerae serogroup O1 El Tor)
-
-
PWY2G6Z-2
lipid metabolism
-
-
Lipopolysaccharide biosynthesis
-
-
lotaustralin degradation
-
-
PWY-6002
luteolin triglucuronide degradation
-
-
PWY-7445
m-cresol degradation
-
-
M-CRESOL-DEGRADATION-PWY
malate/L-aspartate shuttle pathway
-
-
MALATE-ASPARTATE-SHUTTLE-PWY
manganese oxidation I
-
-
PWY-6591
maresin biosynthesis
-
-
PWY-8356
melibiose degradation
-
-
PWY0-1301
Metabolic pathways
-
-
metabolism of amino sugars and derivatives
-
-
metabolism of disaccharids
-
-
Metabolism of xenobiotics by cytochrome P450
-
-
Methane metabolism
-
-
methane metabolism
-
-
methanol oxidation to formaldehyde IV
-
-
PWY-5506
methyl indole-3-acetate interconversion
-
-
PWY-6303
methylsalicylate degradation
-
-
PWY18C3-24
Microbial metabolism in diverse environments
-
-
mucin core 1 and core 2 O-glycosylation
-
-
PWY-7433
mucin core 3 and core 4 O-glycosylation
-
-
PWY-7435
Mucin type O-glycan biosynthesis
-
-
mupirocin biosynthesis
-
-
PWY-8012
mycobactin biosynthesis
-
-
PWY185E-1
mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
-
-
PWY-6397
N-acetyl-D-galactosamine degradation
-
-
PWY-7077
N-acetylglucosamine degradation I
-
-
GLUAMCAT-PWY
NAD metabolism
-
-
NADPH to cytochrome c oxidase via plastocyanin
-
-
PWY-8271
neolinustatin bioactivation
-
-
PWY-7092
nitrate reduction I (denitrification)
-
-
DENITRIFICATION-PWY
nitrate reduction VII (denitrification)
-
-
PWY-6748
nitric oxide biosynthesis II (mammals)
-
-
PWY-4983
nitrifier denitrification
-
-
PWY-7084
nitrite-dependent anaerobic methane oxidation
-
-
PWY-6523
Nitrogen metabolism
-
-
nocardicin A biosynthesis
-
-
PWY-7797
non-pathway related
-
-
Novobiocin biosynthesis
-
-
O-antigen biosynthesis
-
-
O-Antigen nucleotide sugar biosynthesis
-
-
octane oxidation
-
-
P221-PWY
oleate biosynthesis II (animals and fungi)
-
-
PWY-5996
Other glycan degradation
-
-
Other types of O-glycan biosynthesis
-
-
Oxidative phosphorylation
-
-
oxidative phosphorylation
-
-
palmitate biosynthesis II (type II fatty acid synthase)
-
-
PWY-5971
pederin biosynthesis
-
-
PWY-8049
Penicillin and cephalosporin biosynthesis
-
-
pentachlorophenol degradation
-
-
PCPDEG-PWY
Pentose and glucuronate interconversions
-
-
Pentose phosphate pathway
-
-
pentose phosphate pathway
-
-
pentose phosphate pathway (non-oxidative branch) I
-
-
NONOXIPENT-PWY
peptido-conjugates in tissue regeneration biosynthesis
-
-
PWY-8355
peptidoglycan recycling I
-
-
PWY0-1261
phenol degradation
-
-
Phenylalanine metabolism
-
-
Phenylalanine, tyrosine and tryptophan biosynthesis
-
-
Phenylpropanoid biosynthesis
-
-
pheomelanin biosynthesis
-
-
PWY-7917
phosphatidylcholine acyl editing
-
-
PWY-6803
phospholipases
-
-
LIPASYN-PWY
phospholipid remodeling (phosphatidate, yeast)
-
-
PWY-7417
phospholipid remodeling (phosphatidylcholine, yeast)
-
-
PWY-7416
phospholipid remodeling (phosphatidylethanolamine, yeast)
-
-
PWY-7409
photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
-
-
PWY-7218
phytate degradation I
-
-
PWY-4702
plasmalogen biosynthesis I (aerobic)
-
-
PWY-7782
plasmalogen degradation
-
-
PWY-7783
Porphyrin and chlorophyll metabolism
-
-
Primary bile acid biosynthesis
-
-
Propanoate metabolism
-
-
protectin biosynthesis
-
-
PWY-8357
protein S-nitrosylation and denitrosylation
-
-
PWY-7798
pseudouridine degradation
-
-
PWY-6019
Purine metabolism
-
-
Pyrimidine metabolism
-
-
pyrimidine metabolism
-
-
pyrimidine nucleobases salvage II
-
-
PWY-7194
pyrimidine ribonucleosides salvage III
-
-
PWY-7195
pyruvate fermentation to (S)-lactate
-
-
PWY-5481
Pyruvate metabolism
-
-
reactive oxygen species degradation
-
-
DETOX1-PWY-1
resolvin D biosynthesis
-
-
PWY66-397
retinol biosynthesis
-
-
PWY-6857
rosmarinic acid biosynthesis I
-
-
PWY-5048
Rubisco shunt
-
-
PWY-5723
salicin biosynthesis
-
-
PWY-6766
salicortin biosynthesis
-
-
PWY-6763
Salmonella enterica serotype O:13 O antigen biosynthesis
-
-
PWY-8230
Secondary bile acid biosynthesis
-
-
Selenocompound metabolism
-
-
serotonin and melatonin biosynthesis
-
-
PWY-6030
serotonin metabolism
-
-
sorbitol biosynthesis II
-
-
PWY-5530
Sphingolipid metabolism
-
-
sporopollenin precursors biosynthesis
-
-
PWY-6733
stachyose degradation
-
-
PWY-6527
Starch and sucrose metabolism
-
-
starch degradation
-
-
starch degradation I
-
-
PWY-842
stearate biosynthesis I (animals)
-
-
PWY-5972
stearate biosynthesis III (fungi)
-
-
PWY3O-355
Styrene degradation
-
-
suberin monomers biosynthesis
-
-
PWY-1121
succinate to chytochrome c oxidase via cytochrome c6
-
-
PWY1YI0-2
succinate to cytochrome c oxidase via plastocyanin
-
-
PWY1YI0-3
sucrose biosynthesis II
-
-
PWY-7238
sucrose degradation II (sucrose synthase)
-
-
PWY-3801
sucrose degradation III (sucrose invertase)
-
-
PWY-621
sucrose degradation V (sucrose alpha-glucosidase)
-
-
PWY66-373
sulfated glycosaminoglycan metabolism
-
-
sulfolactate degradation III
-
-
PWY-6638
sulfopterin metabolism
-
-
superoxide radicals degradation
-
-
DETOX1-PWY
superpathway of glucose and xylose degradation
-
-
PWY-6901
superpathway of methylsalicylate metabolism
-
-
PWY18C3-25
superpathway of photosynthetic hydrogen production
-
-
PWY-7731
superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
-
-
PWY-7328
Taurine and hypotaurine metabolism
-
-
TCA cycle VIII (Chlamydia)
-
-
TCA-1
Thiamine metabolism
-
-
thioredoxin pathway
-
-
THIOREDOX-PWY
thyroid hormone biosynthesis
Toluene degradation
-
-
toluene degradation to benzoate
-
-
TOLUENE-DEG-CATECHOL-PWY
triacylglycerol degradation
-
-
LIPAS-PWY
Tropane, piperidine and pyridine alkaloid biosynthesis
-
-
Tryptophan metabolism
-
-
tryptophan metabolism
-
-
type I lipoteichoic acid biosynthesis (S. aureus)
-
-
PWY-7817
Tyrosine metabolism
-
-
Ubiquinone and other terpenoid-quinone biosynthesis
-
-
UDP-alpha-D-galactose biosynthesis
-
-
PWY-7344
UDP-alpha-D-glucose biosynthesis
-
-
PWY-7343
UDP-GlcNAc biosynthesis
-
-
UDP-N-acetyl-D-galactosamine biosynthesis III
-
-
PWY-8013
UDP-N-acetyl-D-glucosamine biosynthesis I
-
-
UDPNAGSYN-PWY
UDP-N-acetyl-D-glucosamine biosynthesis II
-
-
UDPNACETYLGALSYN-PWY
UMP biosynthesis III
-
-
PWY-7791
urea cycle
-
-
urea degradation II
-
-
PWY-5704
valproate beta-oxidation
-
-
PWY-8182
vitamin K-epoxide cycle
Xylene degradation
-
-
xyloglucan degradation II (exoglucanase)
-
-
PWY-6807
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
LINKS TO OTHER DATABASES (specific for Bifidobacterium bifidum)