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Literature summary extracted from

  • Kesharwani, S.; Sundriyal, S.
    Non-hydroxamate inhibitors of 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXR) a critical review and future perspective (2021), Eur. J. Med. Chem., 213, 113055 .
    View publication on PubMed

Application

EC Number Application Comment Organism
1.1.1.267 drug development enzyme DXR is an antimicrobial target Escherichia coli
1.1.1.267 drug development enzyme DXR is an antimicrobial target Plasmodium falciparum
1.1.1.267 drug development enzyme DXR is an antimicrobial target Mycobacterium tuberculosis

Inhibitors

EC Number Inhibitors Comment Organism Structure
1.1.1.267 (2-[[hydroxy(methyl)carbamoyl]oxy]ethyl)phosphonic acid
-
Escherichia coli
1.1.1.267 (3-acetamidopropyl)phosphonic acid
-
Escherichia coli
1.1.1.267 (3-boronopropyl)phosphonic acid MIC90 = 0.053 mg/ml Escherichia coli
1.1.1.267 (4-hydrazinyl-4-oxobutyl)phosphonic acid
-
Escherichia coli
1.1.1.267 ([[acetyl(hydroxy)amino]methoxy]methyl)phosphonic acid
-
Escherichia coli
1.1.1.267 ([[acetyl(hydroxy)amino]methoxy]methyl)phosphonic acid
-
Plasmodium falciparum
1.1.1.267 ([[formyl(hydroxy)amino]methoxy]methyl)phosphonic acid
-
Escherichia coli
1.1.1.267 ([[formyl(hydroxy)amino]methoxy]methyl)phosphonic acid
-
Plasmodium falciparum
1.1.1.267 1-hydroxy-5-phenylpyridin-2(1H)-one
-
Escherichia coli
1.1.1.267 2-[acetyl(hydroxy)amino]ethyl phosphate
-
Escherichia coli
1.1.1.267 2-[acetyl(hydroxy)amino]ethyl phosphate
-
Mycobacterium tuberculosis
1.1.1.267 2-[formyl(hydroxy)amino]ethyl phosphate
-
Escherichia coli
1.1.1.267 2-[formyl(hydroxy)amino]ethyl phosphate
-
Mycobacterium tuberculosis
1.1.1.267 4-benzylbenzene-1,2-diol
-
Escherichia coli
1.1.1.267 5-[hydroxy(methyl)amino]-5-oxopentanoic acid
-
Escherichia coli
1.1.1.267 diethyl (2-[[(furan-2-yl)methyl]amino]-2-oxoethyl)phosphonate
-
Escherichia coli
1.1.1.267 diethyl [2-(3-hydroxyanilino)-2-oxoethyl]phosphonate 43.9% inhibition at 0.25 mM Escherichia coli
1.1.1.267 diethyl [2-(3-hydroxyanilino)-2-oxoethyl]phosphonate 45.2% inhibition at 0.25 mM Plasmodium falciparum
1.1.1.267 diethyl [2-oxo-2-[(1,3-thiazol-2-yl)amino]ethyl]phosphonate
-
Escherichia coli
1.1.1.267 diethyl [2-oxo-2-[(pyridin-2-yl)amino]ethyl]phosphonate
-
Escherichia coli
1.1.1.267 diethyl [2-[3-(hydroxymethyl)anilino]-2-oxoethyl]phosphonate 40.4% inhibition at 0.25 mM Escherichia coli
1.1.1.267 diethyl [2-[3-(hydroxymethyl)anilino]-2-oxoethyl]phosphonate 40.7% inhibition at 0.25 mM Plasmodium falciparum
1.1.1.267 diethyl [3-(3-hydroxyanilino)-3-oxopropyl]phosphonate 49.2% inhibition at 0.25 mM Escherichia coli
1.1.1.267 diethyl [3-[3-(hydroxymethyl)anilino]-3-oxopropyl]phosphonate 17.9% inhibition at 0.25 mM Escherichia coli
1.1.1.267 fosmidomycin a natural product, which forms a chelate with the active site divalent metal ion (Mg2+/Mn2+) through its hydroxamate metal-binding group. Competitive versus 1-deoxy-D-xylulose 5-phosphate, uncompetitive versus NADPH, strong inhibition Escherichia coli
1.1.1.267 fosmidomycin a natural product, which forms a chelate with the active site divalent metal ion (Mg2+/Mn2+) through its hydroxamate metal-binding group. Competitive versus 1-deoxy-D-xylulose 5-phosphate, uncompetitive versus NADPH Mycobacterium tuberculosis
1.1.1.267 fosmidomycin a natural product, which forms a chelate with the active site divalent metal ion (Mg2+/Mn2+) through its hydroxamate metal-binding group. Competitive versus 1-deoxy-D-xylulose 5-phosphate, uncompetitive versus NADPH. No or poor inhibition by diethyl [3-[3-(hydroxymethyl)anilino]-3-oxopropyl]phosphonate, diethyl [3-(3-hydroxyanilino)-3-oxopropyl]phosphonate, and [3-(3-methoxyanilino)-3-oxopropyl]phosphonic acid Plasmodium falciparum
1.1.1.267 FR-900098
-
Escherichia coli
1.1.1.267 FR-900098
-
Mycobacterium tuberculosis
1.1.1.267 FR-900098
-
Plasmodium falciparum
1.1.1.267 additional information non-hydroxamate inhibitors of 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXR), docking study, structure-activity analysis, overview. No inhibiton at 0.02 mM by [3-(3-methoxyanilino)-3-oxopropyl]phosphonic acid or [3-[benzyl(pyridin-2-yl)amino]-3-oxopropyl]phosphonic acid or [3-[benzyl(3-hydroxyphenyl)amino]-3-oxopropyl]phosphonic acid or [2-[(sulfanylcarbonothioyl)amino]ethyl]phosphonic acid or [3-[(sulfanylcarbonothioyl)amino]propyl]phosphonic acid or [3-(2,3-dihydroxyphenyl)propyl]phosphonic acid Escherichia coli
1.1.1.267 additional information non-hydroxamate inhibitors of 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXR), docking study, structure-activity analysis, overview Mycobacterium tuberculosis
1.1.1.267 additional information non-hydroxamate inhibitors of 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXR), docking study, structure-activity analysis, overview Plasmodium falciparum
1.1.1.267 [(3,4-dichlorophenyl)([2-[hydroxy(methyl)amino]-2-oxoethyl]sulfanyl)methyl]phosphonic acid
-
Escherichia coli
1.1.1.267 [(3,4-dichlorophenyl)([2-[hydroxy(methyl)amino]-2-oxoethyl]sulfanyl)methyl]phosphonic acid
-
Mycobacterium tuberculosis
1.1.1.267 [(3,4-dichlorophenyl)([2-[hydroxy(methyl)amino]-2-oxoethyl]sulfanyl)methyl]phosphonic acid
-
Plasmodium falciparum
1.1.1.267 [(5-phenylpyridin-2-yl)methyl]phosphonic acid
-
Escherichia coli
1.1.1.267 [(quinolin-2-yl)methyl]phosphonic acid
-
Escherichia coli
1.1.1.267 [1,1'-biphenyl]-3,4-diol
-
Escherichia coli
1.1.1.267 [1-(3,4-dichlorophenyl)-3-[formyl(hydroxy)amino]propyl]phosphonic acid
-
Escherichia coli
1.1.1.267 [1-(3,4-dichlorophenyl)-3-[formyl(hydroxy)amino]propyl]phosphonic acid conformation of inhibitor within the MtDXR active site (PDB ID 2Y1D) Mycobacterium tuberculosis
1.1.1.267 [1-(3,4-dichlorophenyl)-3-[formyl(hydroxy)amino]propyl]phosphonic acid inhibition of strain D2d Plasmodium falciparum
1.1.1.267 [2-(1-hydroxy-6-oxo-1,6-dihydropyridin-2-yl)ethyl]phosphonic acid
-
Mycobacterium tuberculosis
1.1.1.267 [2-(2,3-dihydroxyphenyl)ethyl]phosphonic acid
-
Escherichia coli
1.1.1.267 [2-(3-hydroxy-4-methylphenyl)ethyl]phosphonic acid
-
Mycobacterium tuberculosis
1.1.1.267 [2-(3-methoxyanilino)-2-oxoethyl]phosphonic acid 17.8% inhibition at 0.25 mM Escherichia coli
1.1.1.267 [2-[(hydroxycarbamoyl)oxy]ethyl]phosphonic acid
-
Escherichia coli
1.1.1.267 [2-[acetyl(hydroxy)amino]ethyl]phosphonic acid 74% inhibition at 0.1 mM Mycobacterium tuberculosis
1.1.1.267 [3-(6-methyl-4,8-dioxo-1,3,6,2-dioxazaborocan-2-yl)propyl]phosphonic acid MIC90 = 0.063 mg/ml Escherichia coli
1.1.1.267 [3-oxo-3-[(prop-2-yn-1-yl)amino]propyl]phosphonic acid 6.7% inhibition at 0.020 mM Escherichia coli
1.1.1.267 [3-[acetyl(hydroxy)amino]-1-(3,4-dichlorophenyl)propyl]phosphonic acid
-
Escherichia coli
1.1.1.267 [3-[acetyl(hydroxy)amino]-1-(3,4-dichlorophenyl)propyl]phosphonic acid inhibition of strain D2d Plasmodium falciparum
1.1.1.267 [4-(2-acetylanilino)-4-oxobutyl]phosphonic acid
-
Plasmodium falciparum
1.1.1.267 [4-(2-fluoroanilino)-4-oxobutyl]phosphonic acid
-
Plasmodium falciparum
1.1.1.267 [4-(hydroxyamino)-4-oxobutyl]phosphonic acid
-
Escherichia coli
1.1.1.267 [4-(methoxyamino)-4-oxobutyl]phosphonic acid
-
Escherichia coli
1.1.1.267 [4-[2-(methanesulfonyl)anilino]-4-oxobutyl]phosphonic acid
-
Plasmodium falciparum
1.1.1.267 [4-[acetyl(hydroxy)amino]butyl]phosphonic acid 80% inhibition at 0.1 mM Mycobacterium tuberculosis
1.1.1.267 [4-[hydroxy(methyl)amino]-4-oxobutyl]phosphonic acid
-
Escherichia coli
1.1.1.267 [4-[methoxy(methyl)amino]-4-oxobutyl]phosphonic acid
-
Escherichia coli
1.1.1.267 [[(isoquinolin-1-yl)amino]methylene]bis(phosphonic acid)
-
Escherichia coli

Metals/Ions

EC Number Metals/Ions Comment Organism Structure
1.1.1.267 Mg2+ active site divalent metal ion Escherichia coli
1.1.1.267 Mg2+ active site divalent metal ion Plasmodium falciparum
1.1.1.267 Mg2+ active site divalent metal ion Mycobacterium tuberculosis
1.1.1.267 Mn2+ active site divalent metal ion Escherichia coli
1.1.1.267 Mn2+ active site divalent metal ion Plasmodium falciparum
1.1.1.267 Mn2+ active site divalent metal ion Mycobacterium tuberculosis

Natural Substrates/ Products (Substrates)

EC Number Natural Substrates Organism Comment (Nat. Sub.) Natural Products Comment (Nat. Pro.) Rev. Reac.
1.1.1.267 1-deoxy-D-xylulose 5-phosphate + NADPH + H+ Escherichia coli
-
2-C-methyl-D-erythritol 4-phosphate + NADP+
-
?
1.1.1.267 1-deoxy-D-xylulose 5-phosphate + NADPH + H+ Plasmodium falciparum
-
2-C-methyl-D-erythritol 4-phosphate + NADP+
-
?
1.1.1.267 1-deoxy-D-xylulose 5-phosphate + NADPH + H+ Mycobacterium tuberculosis
-
2-C-methyl-D-erythritol 4-phosphate + NADP+
-
?
1.1.1.267 1-deoxy-D-xylulose 5-phosphate + NADPH + H+ Mycobacterium tuberculosis H37Rv
-
2-C-methyl-D-erythritol 4-phosphate + NADP+
-
?
1.1.1.267 1-deoxy-D-xylulose 5-phosphate + NADPH + H+ Mycobacterium tuberculosis ATCC 25618
-
2-C-methyl-D-erythritol 4-phosphate + NADP+
-
?

Organism

EC Number Organism UniProt Comment Textmining
1.1.1.267 Escherichia coli P45568
-
-
1.1.1.267 Mycobacterium tuberculosis P9WNS1
-
-
1.1.1.267 Mycobacterium tuberculosis ATCC 25618 P9WNS1
-
-
1.1.1.267 Mycobacterium tuberculosis H37Rv P9WNS1
-
-
1.1.1.267 Plasmodium falciparum Q8IKG4
-
-

Substrates and Products (Substrate)

EC Number Substrates Comment Substrates Organism Products Comment (Products) Rev. Reac.
1.1.1.267 1-deoxy-D-xylulose 5-phosphate + NADPH + H+
-
Escherichia coli 2-C-methyl-D-erythritol 4-phosphate + NADP+
-
?
1.1.1.267 1-deoxy-D-xylulose 5-phosphate + NADPH + H+
-
Plasmodium falciparum 2-C-methyl-D-erythritol 4-phosphate + NADP+
-
?
1.1.1.267 1-deoxy-D-xylulose 5-phosphate + NADPH + H+
-
Mycobacterium tuberculosis 2-C-methyl-D-erythritol 4-phosphate + NADP+
-
?
1.1.1.267 1-deoxy-D-xylulose 5-phosphate + NADPH + H+
-
Mycobacterium tuberculosis H37Rv 2-C-methyl-D-erythritol 4-phosphate + NADP+
-
?
1.1.1.267 1-deoxy-D-xylulose 5-phosphate + NADPH + H+
-
Mycobacterium tuberculosis ATCC 25618 2-C-methyl-D-erythritol 4-phosphate + NADP+
-
?

Synonyms

EC Number Synonyms Comment Organism
1.1.1.267 1-deoxy-D-xylulose 5-phosphate reductoisomerase
-
Escherichia coli
1.1.1.267 1-deoxy-D-xylulose 5-phosphate reductoisomerase
-
Plasmodium falciparum
1.1.1.267 1-deoxy-D-xylulose 5-phosphate reductoisomerase
-
Mycobacterium tuberculosis
1.1.1.267 DXR
-
Escherichia coli
1.1.1.267 DXR
-
Plasmodium falciparum
1.1.1.267 DXR
-
Mycobacterium tuberculosis
1.1.1.267 EcDXR
-
Escherichia coli
1.1.1.267 MtDXR
-
Mycobacterium tuberculosis
1.1.1.267 PfDXR
-
Plasmodium falciparum

Cofactor

EC Number Cofactor Comment Organism Structure
1.1.1.267 NADP+
-
Escherichia coli
1.1.1.267 NADP+
-
Plasmodium falciparum
1.1.1.267 NADP+
-
Mycobacterium tuberculosis
1.1.1.267 NADPH
-
Escherichia coli
1.1.1.267 NADPH
-
Plasmodium falciparum
1.1.1.267 NADPH
-
Mycobacterium tuberculosis

Ki Value [mM]

EC Number Ki Value [mM] Ki Value maximum [mM] Inhibitor Comment Organism Structure
1.1.1.267 6.5
-
(3-acetamidopropyl)phosphonic acid pH and temperature not specified in the publication Escherichia coli

IC50 Value

EC Number IC50 Value IC50 Value Maximum Comment Organism Inhibitor Structure
1.1.1.267 0.0000045
-
pH and temperature not specified in the publication Plasmodium falciparum [(3,4-dichlorophenyl)([2-[hydroxy(methyl)amino]-2-oxoethyl]sulfanyl)methyl]phosphonic acid
1.1.1.267 0.0000059
-
pH and temperature not specified in the publication Escherichia coli [(3,4-dichlorophenyl)([2-[hydroxy(methyl)amino]-2-oxoethyl]sulfanyl)methyl]phosphonic acid
1.1.1.267 0.000008
-
pH and temperature not specified in the publication Escherichia coli fosmidomycin
1.1.1.267 0.0000092
-
pH and temperature not specified in the publication Mycobacterium tuberculosis [(3,4-dichlorophenyl)([2-[hydroxy(methyl)amino]-2-oxoethyl]sulfanyl)methyl]phosphonic acid
1.1.1.267 0.000018
-
pH and temperature not specified in the publication Plasmodium falciparum FR-900098
1.1.1.267 0.000028
-
pH and temperature not specified in the publication Plasmodium falciparum [1-(3,4-dichlorophenyl)-3-[formyl(hydroxy)amino]propyl]phosphonic acid
1.1.1.267 0.00003
-
pH and temperature not specified in the publication Escherichia coli FR-900098
1.1.1.267 0.000036
-
pH and temperature not specified in the publication Plasmodium falciparum fosmidomycin
1.1.1.267 0.000048
-
pH and temperature not specified in the publication Escherichia coli [4-[hydroxy(methyl)amino]-4-oxobutyl]phosphonic acid
1.1.1.267 0.000059
-
pH and temperature not specified in the publication Escherichia coli [1-(3,4-dichlorophenyl)-3-[formyl(hydroxy)amino]propyl]phosphonic acid
1.1.1.267 0.000077
-
pH and temperature not specified in the publication Escherichia coli 2-[acetyl(hydroxy)amino]ethyl phosphate
1.1.1.267 0.00008
-
pH and temperature not specified in the publication Mycobacterium tuberculosis fosmidomycin
1.1.1.267 0.000087
-
pH and temperature not specified in the publication Escherichia coli ([[acetyl(hydroxy)amino]methoxy]methyl)phosphonic acid
1.1.1.267 0.00009
-
pH and temperature not specified in the publication Plasmodium falciparum [3-[acetyl(hydroxy)amino]-1-(3,4-dichlorophenyl)propyl]phosphonic acid
1.1.1.267 0.000119
-
pH and temperature not specified in the publication Escherichia coli [3-[acetyl(hydroxy)amino]-1-(3,4-dichlorophenyl)propyl]phosphonic acid
1.1.1.267 0.00016
-
pH and temperature not specified in the publication Mycobacterium tuberculosis FR-900098
1.1.1.267 0.00017
-
pH and temperature not specified in the publication Escherichia coli [4-(hydroxyamino)-4-oxobutyl]phosphonic acid
1.1.1.267 0.000279
-
pH and temperature not specified in the publication Mycobacterium tuberculosis 2-[acetyl(hydroxy)amino]ethyl phosphate
1.1.1.267 0.000342
-
pH and temperature not specified in the publication Escherichia coli 2-[formyl(hydroxy)amino]ethyl phosphate
1.1.1.267 0.00036
-
pH and temperature not specified in the publication Plasmodium falciparum ([[acetyl(hydroxy)amino]methoxy]methyl)phosphonic acid
1.1.1.267 0.00084
-
pH and temperature not specified in the publication Escherichia coli [(5-phenylpyridin-2-yl)methyl]phosphonic acid
1.1.1.267 0.0011
-
pH and temperature not specified in the publication Escherichia coli ([[formyl(hydroxy)amino]methoxy]methyl)phosphonic acid
1.1.1.267 0.0014
-
pH and temperature not specified in the publication Escherichia coli 1-hydroxy-5-phenylpyridin-2(1H)-one
1.1.1.267 0.0021
-
pH and temperature not specified in the publication Mycobacterium tuberculosis 2-[formyl(hydroxy)amino]ethyl phosphate
1.1.1.267 0.003
-
above, pH and temperature not specified in the publication Escherichia coli (2-[[hydroxy(methyl)carbamoyl]oxy]ethyl)phosphonic acid
1.1.1.267 0.003
-
above, pH and temperature not specified in the publication Escherichia coli [2-[(hydroxycarbamoyl)oxy]ethyl]phosphonic acid
1.1.1.267 0.004
-
pH and temperature not specified in the publication Escherichia coli [[(isoquinolin-1-yl)amino]methylene]bis(phosphonic acid)
1.1.1.267 0.0049
-
pH and temperature not specified in the publication Plasmodium falciparum ([[formyl(hydroxy)amino]methoxy]methyl)phosphonic acid
1.1.1.267 0.0159
-
pH and temperature not specified in the publication Escherichia coli [(quinolin-2-yl)methyl]phosphonic acid
1.1.1.267 0.0224
-
pH and temperature not specified in the publication Escherichia coli 4-benzylbenzene-1,2-diol
1.1.1.267 0.025
-
pH and temperature not specified in the publication Escherichia coli 5-[hydroxy(methyl)amino]-5-oxopentanoic acid
1.1.1.267 0.041
-
pH and temperature not specified in the publication Mycobacterium tuberculosis [2-(3-hydroxy-4-methylphenyl)ethyl]phosphonic acid
1.1.1.267 0.0447
-
pH and temperature not specified in the publication Escherichia coli [1,1'-biphenyl]-3,4-diol
1.1.1.267 0.053
-
pH and temperature not specified in the publication Mycobacterium tuberculosis [2-(1-hydroxy-6-oxo-1,6-dihydropyridin-2-yl)ethyl]phosphonic acid
1.1.1.267 0.064
-
above, pH and temperature not specified in the publication Plasmodium falciparum [4-(2-acetylanilino)-4-oxobutyl]phosphonic acid
1.1.1.267 0.064
-
above, pH and temperature not specified in the publication Plasmodium falciparum [4-(2-fluoroanilino)-4-oxobutyl]phosphonic acid
1.1.1.267 0.064
-
above, pH and temperature not specified in the publication Plasmodium falciparum [4-[2-(methanesulfonyl)anilino]-4-oxobutyl]phosphonic acid
1.1.1.267 0.408
-
pH and temperature not specified in the publication Escherichia coli diethyl (2-[[(furan-2-yl)methyl]amino]-2-oxoethyl)phosphonate
1.1.1.267 0.472
-
pH and temperature not specified in the publication Escherichia coli diethyl [2-oxo-2-[(pyridin-2-yl)amino]ethyl]phosphonate
1.1.1.267 0.73
-
pH and temperature not specified in the publication Escherichia coli diethyl [2-oxo-2-[(1,3-thiazol-2-yl)amino]ethyl]phosphonate
1.1.1.267 0.93
-
pH and temperature not specified in the publication Escherichia coli [4-(methoxyamino)-4-oxobutyl]phosphonic acid
1.1.1.267 1
-
pH and temperature not specified in the publication Escherichia coli (4-hydrazinyl-4-oxobutyl)phosphonic acid
1.1.1.267 1.2
-
pH and temperature not specified in the publication Escherichia coli [2-(2,3-dihydroxyphenyl)ethyl]phosphonic acid
1.1.1.267 3.8
-
pH and temperature not specified in the publication Escherichia coli [4-[methoxy(methyl)amino]-4-oxobutyl]phosphonic acid

General Information

EC Number General Information Comment Organism
1.1.1.267 malfunction DXR is essential for the survival of the pathogen, and its inhibition leads to the antimalarial action Plasmodium falciparum
1.1.1.267 malfunction DXR is essential for the survival of the pathogen, and its inhibition leads to the antitubercular action Mycobacterium tuberculosis
1.1.1.267 metabolism 1-deoxy-D-xylulose-5-phosphate reductoisomerase (DXR) catalyzes the second step of the nonmevalonate (or MEP) pathway that functions in several organisms and plants for the synthesis of isoprenoids Escherichia coli
1.1.1.267 metabolism 1-deoxy-D-xylulose-5-phosphate reductoisomerase (DXR) catalyzes the second step of the nonmevalonate (or MEP) pathway that functions in several organisms and plants for the synthesis of isoprenoids Plasmodium falciparum
1.1.1.267 metabolism 1-deoxy-D-xylulose-5-phosphate reductoisomerase (DXR) catalyzes the second step of the nonmevalonate (or MEP) pathway that functions in several organisms and plants for the synthesis of isoprenoids Mycobacterium tuberculosis
1.1.1.267 physiological function DXR is essential for the survival of multiple pathogenic bacteria/parasites Escherichia coli
1.1.1.267 physiological function DXR is essential for the survival of multiple pathogenic bacteria/parasites, including those that cause tuberculosis and malaria in humans Plasmodium falciparum
1.1.1.267 physiological function DXR is essential for the survival of multiple pathogenic bacteria/parasites, including those that cause tuberculosis and malaria in humans Mycobacterium tuberculosis