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Literature summary extracted from

  • Tripathy, R.K.; Aggarwal, G.; Bajaj, P.; Kathuria, D.; Bharatam, P.V.; Pande, A.H.
    Towards understanding the catalytic mechanism of human paraoxonase 1 experimental and in silico mutagenesis studies (2017), Appl. Biochem. Biotechnol., 182, 1642-1662 .
    View publication on PubMed

Application

EC Number Application Comment Organism
3.1.8.1 medicine human paraoxonase 1 (h-PON1) is a potential candidate for the development of antidote against organophosphate (OP) compounds poisoning in humans. Insufficient organophosphate-hydrolyzing activity of native enzyme affirms the urgent need to develop improved variant(s) having enhanced organophosphate-hydrolyzing activity Homo sapiens
3.1.8.2 medicine human paraoxonase 1 (h-PON1) is a potential candidate for the development of antidote against organophosphate (OP) compounds poisoning in humans. Insufficient organophosphate-hydrolyzing activity of native enzyme affirms the urgent need to develop improved variant(s) having enhanced organophosphate-hydrolyzing activity Homo sapiens

Cloned(Commentary)

EC Number Cloned (Comment) Organism
3.1.1.2 expressed in Escherichia coli BL21(DE3) cells Homo sapiens
3.1.1.25 expressed in Escherichia coli BL21(DE3) cells Homo sapiens
3.1.1.81 gene PON1, recombinant expression of His-tagged wild-type and mutant enzymes in Escherichia coli strain BL21(DE3) Homo sapiens
3.1.8.1 expressed in Escherichia coli BL21(DE3) cells Homo sapiens
3.1.8.1 gene PON1, recombinant expression of wild-type and mutant enzymes in Escherichia coli strain BL21(DE3) in inclusion bodies, subcloning in Escherichia coli strain DH5alpha Homo sapiens
3.1.8.2 gene PON1, recombinant expression of wild-type and mutant enzymes in Escherichia coli strain BL21(DE3) in inclusion bodies, subcloning in Escherichia coli strain DH5alpha Homo sapiens

Protein Variants

EC Number Protein Variants Comment Organism
3.1.1.25 R180T the mutant retains a partial hydrolyzing activity against homocysteinethiolactone, whereas the delta-valerolactone-hydrolyzing activity is completely abolished Homo sapiens
3.1.1.81 H115W/R192K site-directed mutagenesis, the mutant shows altered substrate specificity compared to wild-type Homo sapiens
3.1.1.81 H115W/R192K/A137T site-directed mutagenesis, the mutant shows altered substrate specificity compared to wild-type Homo sapiens
3.1.1.81 H115W/R192K/A137T/D94H/S211T site-directed mutagenesis, the mutant shows altered substrate specificity compared to wild-type Homo sapiens
3.1.1.81 H115W/R192K/A137T/L130F site-directed mutagenesis, the mutant shows altered substrate specificity compared to wild-type Homo sapiens
3.1.1.81 H115W/R192K/A137T/M127I/D263H site-directed mutagenesis, the mutant shows altered substrate specificity compared to wild-type Homo sapiens
3.1.1.81 H115W/R192K/A137T/S81R/P165A site-directed mutagenesis, the mutant shows altered substrate specificity compared to wild-type Homo sapiens
3.1.1.81 L55M natural polymorphism, the polymorphism at the 55th position of h-PON1 does not affect the catalytic properties of the enzyme Homo sapiens
3.1.1.81 additional information the h-PON1 is a polymorphic enzyme, and two polymorphisms are reported in the coding region of the enzyme: one at position 55 (Leu/Met) and the other at position 192 (Arg/Gln). It is observed that the polymorphism at the 55th position of h-PON1 does not affect the catalytic properties of the enzyme, while polymorphism at position 192 plays an important role in determining the substrate specificity and catalytic efficiency of the enzyme. Random mutagenesis approach to increase the organophosphate (OP)-hydrolyzing activity of recombinant h-PON1, and mutant screening for OP-hydrolyzing activity. The mutants show a 10-340fold increased organophosphate-hydrolyzing activity against different organophosphate substrates but also exhibit differential lactonase and arylesterase activities compared to the wild-type Homo sapiens
3.1.1.81 R192E natural polymorphism, polymorphism at position 192 plays an important role in determining the substrate specificity and catalytic efficiency of the enzyme Homo sapiens
3.1.8.1 H115W/R192K site-directed mutagenesis, the mutant shows altered substrate specificity compared to wild-type Homo sapiens
3.1.8.1 H115W/R192K the mutant enzyme exhibits considerably increased organophosphate-hydrolyzing activity compared to the wild type enzyme Homo sapiens
3.1.8.1 H115W/R192K/A137T site-directed mutagenesis, the mutant shows altered substrate specificity compared to wild-type Homo sapiens
3.1.8.1 H115W/R192K/A137T/D94H/S211T site-directed mutagenesis, the mutant shows altered substrate specificity compared to wild-type Homo sapiens
3.1.8.1 H115W/R192K/A137T/L130F site-directed mutagenesis, the mutant shows altered substrate specificity compared to wild-type Homo sapiens
3.1.8.1 H115W/R192K/A137T/M127I/D263H site-directed mutagenesis, the mutant shows altered substrate specificity compared to wild-type Homo sapiens
3.1.8.1 H115W/R192K/A137T/S81R/P165A site-directed mutagenesis, the mutant shows altered substrate specificity compared to wild-type Homo sapiens
3.1.8.1 L55M natural polymorphism, the polymorphism at the 55th position of h-PON1 does not affect the catalytic properties of the enzyme Homo sapiens
3.1.8.1 additional information h-PON1 is a polymorphic enzyme. A random mutagenesis approach is used to increase the organophosphate (OP)-hydrolyzing activity of recombinant enzyme h-PON1. The mutants not only show a 10-340fold increased OP-hydrolyzing activity against different OP substrates but also exhibit differential lactonase and arylesterase activities, molecular docking studies, overview. Random mutagenesis using Escherichia coli XL-1 Red mutator strain. All mutations result in a considerable decrease in the delta-valerolactone-hydrolyzing activity of the enzyme Homo sapiens
3.1.8.1 R180T the mutant enzyme exhibits 180fold increased ethyl paraoxon-hydrolyzing activity compared to the wild type enzyme Homo sapiens
3.1.8.1 R192E natural polymorphism, polymorphism at position 192 plays an important role in determining the substrate specificity and catalytic efficiency of the enzyme Homo sapiens
3.1.8.1 R460T the mutant enzyme exhibits 23fold increased ethyl paraoxon-hydrolyzing activity and 340fold increased diisopropylfluorophosphate-hydrolyzing activity compared to the wild type enzyme Homo sapiens
3.1.8.1 R478T the mutant enzyme exhibits 8fold increased ethyl paraoxon-hydrolyzing activity compared to the wild type enzyme Homo sapiens
3.1.8.1 R784T the mutant enzyme exhibits 3fold increased ethyl paraoxon-hydrolyzing activity compared to the wild type enzyme Homo sapiens
3.1.8.1 R789T the mutant enzyme exhibits 15fold increased ethyl paraoxon-hydrolyzing activity compared to the wild type enzyme Homo sapiens
3.1.8.2 H115W/R192K site-directed mutagenesis, the mutant shows altered substrate specificity compared to wild-type Homo sapiens
3.1.8.2 H115W/R192K/A137T site-directed mutagenesis, the mutant shows altered substrate specificity compared to wild-type Homo sapiens
3.1.8.2 H115W/R192K/A137T/D94H/S211T site-directed mutagenesis, the mutant shows altered substrate specificity compared to wild-type Homo sapiens
3.1.8.2 H115W/R192K/A137T/L130F site-directed mutagenesis, the mutant shows altered substrate specificity compared to wild-type Homo sapiens
3.1.8.2 H115W/R192K/A137T/M127I/D263H site-directed mutagenesis, the mutant shows altered substrate specificity compared to wild-type Homo sapiens
3.1.8.2 H115W/R192K/A137T/S81R/P165A site-directed mutagenesis, the mutant shows altered substrate specificity compared to wild-type Homo sapiens
3.1.8.2 L55M natural polymorphism, the polymorphism at the 55th position of h-PON1 does not affect the catalytic properties of the enzyme Homo sapiens
3.1.8.2 additional information h-PON1 is a polymorphic enzyme. A random mutagenesis approach is used to increase the organophosphate (OP)-hydrolyzing activity of recombinant enzyme h-PON1. The mutants not only show a 10-340fold increased OP-hydrolyzing activity against different OP substrates but also exhibit differential lactonase and arylesterase activities, molecular docking studies, overview. Random mutagenesis using Escherichia coli XL-1 Red mutator strain. All mutations result in a considerable decrease in the delta-valerolactone-hydrolyzing activity of the enzyme Homo sapiens
3.1.8.2 R192E natural polymorphism, polymorphism at position 192 plays an important role in determining the substrate specificity and catalytic efficiency of the enzyme Homo sapiens

Inhibitors

EC Number Inhibitors Comment Organism Structure
3.1.1.2 2-hydroxyquinoline specific inhibitor Homo sapiens
3.1.1.25 2-hydroxyquinoline specific inhibitor Homo sapiens
3.1.1.81 2-hydroxyquinoline a specific reversible competitive inhibitor of h-PON1 that is known to bind in the active site of the enzyme and inhibit the hydrolytic activities of the enzyme Homo sapiens
3.1.8.1 2-hydroxyquinoline a specific reversible competitive inhibitor of h-PON1 that is known to bind in the active site of the enzyme and inhibit the hydrolytic activities of the enzyme; specific inhibitor Homo sapiens
3.1.8.2 2-hydroxyquinoline a specific reversible competitive inhibitor of h-PON1 that is known to bind in the active site of the enzyme and inhibit the hydrolytic activities of the enzyme Homo sapiens

Metals/Ions

EC Number Metals/Ions Comment Organism Structure
3.1.1.81 Ca2+ required for catalysis Homo sapiens
3.1.8.1 Ca2+ dependent on Homo sapiens
3.1.8.2 Ca2+ dependent on Homo sapiens

Natural Substrates/ Products (Substrates)

EC Number Natural Substrates Organism Comment (Nat. Sub.) Natural Products Comment (Nat. Pro.) Rev. Reac.
3.1.1.81 additional information Homo sapiens the h-PON1 can hydrolyze (and inactivate) a variety of substrates including aryl esters, thioesters, phosphotriesters, carbonates, lactones and thiolactones, and its various hydrolytic activities can be broadly grouped into three categories, namely arylesterase, organophosphatase, and lactonase. The native activity of h-PON1 seems to be lactonase. Polymorphism at position 192 plays an important role in determining the substrate specificity and catalytic efficiency of the enzyme ?
-
?
3.1.8.1 chlorpyrifos oxon + H2O Homo sapiens
-
diethyl phosphate + 3,5,6-trichloropyridin-2-ol
-
?
3.1.8.1 diethyl-paraoxon + H2O Homo sapiens
-
diethyl phosphate + 4-nitrophenol
-
?
3.1.8.2 chlorpyrifos oxon + H2O Homo sapiens
-
diethyl phosphate + 3,5,6-trichloropyridin-2-ol
-
?
3.1.8.2 diisopropyl fluorophosphate + H2O Homo sapiens
-
diisopropyl phosphate + fluoride
-
?

Organism

EC Number Organism UniProt Comment Textmining
3.1.1.2 Homo sapiens
-
-
-
3.1.1.25 Homo sapiens
-
-
-
3.1.1.81 Homo sapiens P27169
-
-
3.1.8.1 Homo sapiens
-
-
-
3.1.8.1 Homo sapiens P27169
-
-
3.1.8.2 Homo sapiens P27169
-
-

Purification (Commentary)

EC Number Purification (Comment) Organism
3.1.1.2 Q-Sepharose column chromatography Homo sapiens
3.1.1.25 Q-Sepharose column chromatography Homo sapiens
3.1.1.81 recombinant His-tagged wild-type and mutant enzymes from Escherichia coli strain BL21(DE3) by nickel affinity chromatography Homo sapiens
3.1.8.1 Q-Sepharose column chromatography Homo sapiens
3.1.8.1 recombinant wild-type and mutant enzymes refolded from Escherichia coli strain BL21(DE3) inclusion bodies by ion exchange chromatography Homo sapiens
3.1.8.2 recombinant wild-type and mutant enzymes refolded from Escherichia coli strain BL21(DE3) inclusion bodies by ion exchange chromatography Homo sapiens

Reaction

EC Number Reaction Comment Organism Reaction ID
3.1.8.1 an aryl dialkyl phosphate + H2O = dialkyl phosphate + an aryl alcohol molecular details of the catalytic mechanism of h-PON1 Homo sapiens
3.1.8.2 diisopropyl fluorophosphate + H2O = diisopropyl phosphate + fluoride molecular details of the catalytic mechanism of h-PON1 Homo sapiens

Renatured (Commentary)

EC Number Renatured (Comment) Organism
3.1.8.1 refolding of recombinant wild-type and mutant enzymes from Escherichia coli strain BL21(DE3) inclusion bodies. The recombinant proteins are refolded to their active form by in vitro refolding, and the active protein present in the refolding reaction mixture is further purified Homo sapiens
3.1.8.2 refolding of recombinant wild-type and mutant enzymes from Escherichia coli strain BL21(DE3) inclusion bodies. The recombinant proteins are refolded to their active form by in vitro refolding, and the active protein present in the refolding reaction mixture is further purified Homo sapiens

Source Tissue

EC Number Source Tissue Comment Organism Textmining
3.1.1.2 blood serum
-
Homo sapiens
-
3.1.1.25 blood serum
-
Homo sapiens
-
3.1.1.81 serum
-
Homo sapiens
-
3.1.8.1 blood serum
-
Homo sapiens
-
3.1.8.1 serum
-
Homo sapiens
-
3.1.8.2 serum
-
Homo sapiens
-

Substrates and Products (Substrate)

EC Number Substrates Comment Substrates Organism Products Comment (Products) Rev. Reac.
3.1.1.2 phenyl acetate + H2O
-
Homo sapiens phenol + acetate
-
?
3.1.1.25 delta valerolactone + H2O
-
Homo sapiens 5-hydroxypentanoic acid
-
?
3.1.1.25 homocysteinethiolactone + H2O
-
Homo sapiens homocysteine
-
?
3.1.1.25 N-oxodecanoyl-DL-homoserine lactone + H2O
-
Homo sapiens N-(3-oxodecanoyl)homoserine
-
?
3.1.1.81 delta valerolactone + H2O
-
Homo sapiens valerate
-
?
3.1.1.81 homo-L-cysteine thiolactone + H2O
-
Homo sapiens homo-L-cysteine
-
?
3.1.1.81 additional information the h-PON1 can hydrolyze (and inactivate) a variety of substrates including aryl esters, thioesters, phosphotriesters, carbonates, lactones and thiolactones, and its various hydrolytic activities can be broadly grouped into three categories, namely arylesterase, organophosphatase, and lactonase. The native activity of h-PON1 seems to be lactonase. Polymorphism at position 192 plays an important role in determining the substrate specificity and catalytic efficiency of the enzyme Homo sapiens ?
-
?
3.1.1.81 additional information h-PON1 enzyme is also active with diethyl-paraoxon, diisopropyl fluorophosphate and chlorpyrifos-oxon, cf. EC 3.1.8.1 and EC 3.1.8.2 Homo sapiens ?
-
?
3.1.1.81 N-3-oxodecanoyl-DL-homoserine lactone + H2O the N-oxodecanoyl-DL-homoserine lactone-hydrolyzing activity of recombinant h-PON1 enzyme is determined by using a recombinant quorum-sensing reporter Escherichia coli strain Homo sapiens N-3-oxodecanoyl-DL-homoserine
-
?
3.1.8.1 chlorpyrifos oxon + H2O
-
Homo sapiens diethyl phosphate + 3,5,6-trichloropyridin-2-ol
-
?
3.1.8.1 chlorpyrifos oxon + H2O i.e. CPO, a metabolite of chlorpyrifos that is used as a pesticide in agriculture industry Homo sapiens diethyl phosphate + 3,5,6-trichloropyridin-2-ol
-
?
3.1.8.1 chlorpyrifosoxon + H2O
-
Homo sapiens 3,5,6-trichloro-pyridin-2-ol + diethyl phosphate
-
?
3.1.8.1 diethyl-paraoxon + H2O
-
Homo sapiens diethyl phosphate + 4-nitrophenol
-
?
3.1.8.1 diisopropyl fluorophosphate + H2O reaction of EC 3.1.8.2, highly toxic structural analogue of G-class type of nerve agents Homo sapiens diisopropyl phosphate + fluoride
-
?
3.1.8.1 diisopropylfluorophosphate + H2O
-
Homo sapiens ?
-
?
3.1.8.1 ethyl paraoxon + H2O
-
Homo sapiens 4-nitrophenol + diethyl phosphate
-
?
3.1.8.1 additional information the enzyme is also active with substrates of EC 3.1.1.81, quorum-quenching N-acyl-homoserine lactonase, and EC 3.1.8.2, diisopropyl-fluorophosphatase, hydrolyzing diisopropyl-fluorophosphates and phosphorus-halide and phosphorus-cyanide bonds in organophosphorus compounds. Measurement of N-oxodecanoyl-DL-homoserine lactone (3O-C10AHL)-hydrolyzing activity (EC 3.1.1.81) of recombinant h-PON1 enzymes is determined by using a recombinant quorum-sensing reporter Escherichia coli strain Homo sapiens ?
-
?
3.1.8.1 phenyl acetate + H2O
-
Homo sapiens phenol + acetate
-
?
3.1.8.2 chlorpyrifos oxon + H2O
-
Homo sapiens diethyl phosphate + 3,5,6-trichloropyridin-2-ol
-
?
3.1.8.2 chlorpyrifos oxon + H2O i.e. CPO, a metabolite of chlorpyrifos that is used as a pesticide in agriculture industry Homo sapiens diethyl phosphate + 3,5,6-trichloropyridin-2-ol
-
?
3.1.8.2 diethyl-paraoxon + H2O reaction of EC 3.1.8.1 Homo sapiens diethyl phosphate + 4-nitrophenol
-
?
3.1.8.2 diisopropyl fluorophosphate + H2O
-
Homo sapiens diisopropyl phosphate + fluoride
-
?
3.1.8.2 diisopropyl fluorophosphate + H2O highly toxic structural analogue of G-class type of nerve agents Homo sapiens diisopropyl phosphate + fluoride
-
?
3.1.8.2 additional information the enzyme is also active with substrates of EC 3.1.1.81, quorum-quenching N-acyl-homoserine lactonase, and EC 3.1.8.1, paraoxonase, hydrolyzing organophosphorus compounds. Measurement of N-oxodecanoyl-DL-homoserine lactone (3O-C10AHL)-hydrolyzing activity (EC 3.1.1.81) of recombinant h-PON1 enzymes is determined by using a recombinant quorum-sensing reporter Escherichia coli strain Homo sapiens ?
-
?
3.1.8.2 phenyl acetate + H2O
-
Homo sapiens phenol + acetate
-
?

Subunits

EC Number Subunits Comment Organism
3.1.1.2 ? x * 45000, SDS-PAGE Homo sapiens
3.1.1.25 ? x * 45000, SDS-PAGE Homo sapiens
3.1.1.81 ? x * 45000, about, SDS-PAGE Homo sapiens
3.1.1.81 More features observed in the structure of PON1, i.e. the six-bladed beta-propeller scaffold, the three alpha-helices at the top of the propeller and the putative calcium-binding residues, are well conserved in the modelled structures Homo sapiens
3.1.8.1 ? x * 45000, SDS-PAGE Homo sapiens
3.1.8.1 ? x * 45000, about, SDS-PAGE Homo sapiens
3.1.8.1 More features observed in the structure of PON1, i.e. the six-bladed beta-propeller scaffold, the three alpha-helices at the top of the propeller and the putative calcium-binding residues, are well conserved in the modelled structures Homo sapiens
3.1.8.2 ? x * 45000, about, SDS-PAGE Homo sapiens
3.1.8.2 More features observed in the structure of PON1, i.e. the six-bladed beta-propeller scaffold, the three alpha-helices at the top of the propeller and the putative calcium-binding residues, are well conserved in the modelled structures Homo sapiens

Synonyms

EC Number Synonyms Comment Organism
3.1.1.81 h-PON1
-
Homo sapiens
3.1.1.81 human paraoxonase 1
-
Homo sapiens
3.1.1.81 More cf. EC 3.1.8.1 and EC 3.1.8.2 Homo sapiens
3.1.1.81 paraoxonase 1
-
Homo sapiens
3.1.1.81 quorum-sensing lactonase
-
Homo sapiens
3.1.8.1 h-PON1
-
Homo sapiens
3.1.8.1 More cf. EC 3.1.8.2 and EC 3.1.1.81 Homo sapiens
3.1.8.1 paraoxonase 1
-
Homo sapiens
3.1.8.2 h-PON1
-
Homo sapiens
3.1.8.2 More cf. EC 3.1.8.1 and EC 3.1.1.81 Homo sapiens
3.1.8.2 paraoxonase 1
-
Homo sapiens

Temperature Optimum [°C]

EC Number Temperature Optimum [°C] Temperature Optimum Maximum [°C] Comment Organism
3.1.1.81 25
-
assay at Homo sapiens
3.1.8.1 25
-
assay at Homo sapiens
3.1.8.2 25
-
assay at Homo sapiens

pH Optimum

EC Number pH Optimum Minimum pH Optimum Maximum Comment Organism
3.1.1.81 8
-
assay at Homo sapiens
3.1.8.1 8
-
assay at Homo sapiens
3.1.8.2 8
-
assay at Homo sapiens

General Information

EC Number General Information Comment Organism
3.1.1.81 additional information h-PON1 is a polymorphic enzyme. Molecular docking analysis, homology modelling, overview Homo sapiens
3.1.1.81 physiological function the h-PON1 can hydrolyze (and inactivate) a variety of substrates including aryl esters, thioesters, phosphotriesters, carbonates, lactones and thiolactones, and its various hydrolytic activities can be broadly grouped into three categories, namely arylesterase, organophosphatase and lactonase. It has been suggested that the native activity of h-PON1 is lactonase. Polymorphism at position 192 plays an important role in determining the substrate specificity and catalytic efficiency of the enzyme. The enzyme has been shown to possess anti-inflammatory, anti-oxidative, anti-diabetic and quorum sensor-hydrolyzing activities. It is proposed that the lactonase activity of enzyme is important for these defensive roles Homo sapiens
3.1.8.1 malfunction insufficient organophosphate-hydrolyzing activity of native enzyme affirms the urgent need to develop improved variant(s) having enhanced organophosphate-hydrolyzing activity. Enzyme mutants show altered substrate specificity with increased activity against paraoxon and lactone substrates, overview Homo sapiens
3.1.8.1 additional information h-PON1 is a polymorphic enzyme. Molecular docking analysis, homology modelling, overview Homo sapiens
3.1.8.1 physiological function human paraoxonase 1 (h-PON1) is a serum enzyme that can hydrolyze a variety of substrates, including organophosphate (OP) compounds. PON1 can hydrolyze and inactivate a variety of organophosphate (OP) compounds, including certain OP pesticides and nerve agents (NAs). It is a potential candidate for the development of antidote against OP poisoning in humans. The enzyme possesses anti-inflammatory, anti-oxidative, anti-diabetic and quorum sensor-hydrolyzing activities, it is proposed that the lactonase activity of the enzyme is important for these defensive roles, cf. EC 3.1.1.81 Homo sapiens
3.1.8.2 malfunction insufficient organophosphate-hydrolyzing activity of native enzyme affirms the urgent need to develop improved variant(s) having enhanced organophosphate-hydrolyzing activity. Enzyme mutants show altered substrate specificity with increased activity against paraoxon and lactone substrates, overview Homo sapiens
3.1.8.2 additional information h-PON1 is a polymorphic enzyme. Molecular docking analysis, homology modelling, overview Homo sapiens
3.1.8.2 physiological function human paraoxonase 1 (h-PON1) is a serum enzyme that can hydrolyze a variety of substrates, including organophosphate (OP) compounds. PON1 can hydrolyze and inactivate a variety of organophosphate (OP) compounds, including certain OP pesticides and nerve agents (NAs). It is a potential candidate for the development of antidote against OP poisoning in humans. The enzyme possesses anti-inflammatory, anti-oxidative, anti-diabetic and quorum sensor-hydrolyzing activities, it is proposed that the lactonase activity of the enzyme is important for these defensive roles, cf. EC 3.1.1.81 Homo sapiens