Any feedback?
Please rate this page
(literature.php)
(0/150)

BRENDA support

Literature summary extracted from

  • Weelink, S.A.; Tan, N.C.; ten Broeke, H.; van den Kieboom, C.; van Doesburg, W.; Langenhoff, A.A.; Gerritse, J.; Junca, H.; Stams, A.J.
    Isolation and characterization of Alicycliphilus denitrificans strain BC, which grows on benzene with chlorate as the electron acceptor (2008), Appl. Environ. Microbiol., 74, 6672-6681.
    View publication on PubMedView publication on EuropePMC

Application

EC Number Application Comment Organism
1.13.11.49 biotechnology degradation of benzene from anoxic polluted soil with chlorate Alicycliphilus denitrificans
1.97.1.1 degradation (per)chlorate-reducing microorganisms are useful for bioremediation of soils and sediments Alicycliphilus denitrificans

Natural Substrates/ Products (Substrates)

EC Number Natural Substrates Organism Comment (Nat. Sub.) Natural Products Comment (Nat. Pro.) Rev. Reac.
1.13.11.49 chlorite Alicycliphilus denitrificans
-
 chloride + O2 reaction provides oxygen for aerobic benzene biodegradation ?
1.13.11.49 chlorite Alicycliphilus denitrificans BC
-
 chloride + O2 reaction provides oxygen for aerobic benzene biodegradation ?
1.97.1.1 AH2 + chlorate Alicycliphilus denitrificans the reaction is part of a proposed benzene degradation pathway with chlorate as the electron acceptor, benzene + ClO3- are converted into CO2 + Cl- + H2O A + H2O + chlorite
-
 ?
1.97.1.1 AH2 + chlorate Alicycliphilus denitrificans BC the reaction is part of a proposed benzene degradation pathway with chlorate as the electron acceptor, benzene + ClO3- are converted into CO2 + Cl- + H2O A + H2O + chlorite
-
 ?

Organism

EC Number Organism UniProt Comment Textmining
1.13.11.1 Alicycliphilus sp. BC A6N2H5
-
-
1.13.11.49 Alicycliphilus denitrificans
-
-
-
1.13.11.49 Alicycliphilus denitrificans BC
-
-
-
1.13.11.49 Alicycliphilus sp.
-
-
-
1.97.1.1 Alicycliphilus denitrificans
-
-
-
1.97.1.1 Alicycliphilus denitrificans BC
-
-
-
1.97.1.1 Alicycliphilus sp.
-
-
-

Purification (Commentary)

EC Number Purification (Comment) Organism
1.13.11.49 centrifuged cell extract, cells grown in AW-1-sulfate medium with benzene and chlorate or benzene and oxygen Alicycliphilus denitrificans
1.97.1.1 cell extracts are prepared Alicycliphilus denitrificans

Specific Activity [micromol/min/mg]

EC Number Specific Activity Minimum [µmol/min/mg] Specific Activity Maximum [µmol/min/mg] Comment Organism
1.13.11.49 5.7
-
 benzene and chlorate, 30°C, oxygen production measured with Clark-type oxygen electrode Alicycliphilus denitrificans
1.13.11.49 5.7
-
 benzene- and chlorate grown cells Alicycliphilus sp.
1.13.11.49 22
-
 acetate and chlorate, 30°C, oxygen production measured with Clark-type oxygen electrode Alicycliphilus denitrificans
1.13.11.49 22
-
 cells grown on acetate and chlorate Alicycliphilus sp.
1.97.1.1 0.3
-
 cells grown on acetate and chlorate Alicycliphilus sp.
1.97.1.1 0.4
-
 cell extract Alicycliphilus denitrificans
1.97.1.1 0.4
-
 benzene- and chlorate-grown cells Alicycliphilus sp.

Substrates and Products (Substrate)

EC Number Substrates Comment Substrates Organism Products Comment (Products) Rev. Reac.
1.13.11.1 catechol + O2
-
 Alicycliphilus sp. BC cis,cis-muconate
-
 ir
1.13.11.49 chlorite
-
 Alicycliphilus sp. chloride + O2
-
 ir
1.13.11.49 chlorite
-
 Alicycliphilus denitrificans chloride + O2 reaction provides oxygen for aerobic benzene biodegradation ?
1.13.11.49 chlorite
-
 Alicycliphilus denitrificans BC chloride + O2 reaction provides oxygen for aerobic benzene biodegradation ?
1.97.1.1 AH2 + chlorate the reaction is part of a proposed benzene degradation pathway with chlorate as the electron acceptor, benzene + ClO3- are converted into CO2 + Cl- + H2O Alicycliphilus denitrificans A + H2O + chlorite
-
 ?
1.97.1.1 AH2 + chlorate the reaction is part of a proposed benzene degradation pathway with chlorate as the electron acceptor, benzene + ClO3- are converted into CO2 + Cl- + H2O Alicycliphilus denitrificans BC A + H2O + chlorite
-
 ?
1.97.1.1 chlorate + reduced electron acceptor
-
 Alicycliphilus sp. chlorite + H2O + oxidized electron acceptor
-
 ir

Synonyms

EC Number Synonyms Comment Organism
1.13.11.1 BC-C23O
-
 Alicycliphilus sp. BC
1.13.11.1 putative catechol 2,3-dioxygenase involved in benzene metabolism Alicycliphilus sp. BC
1.13.11.49 chlorite dismutase
-
 Alicycliphilus denitrificans
1.13.11.49 chlorite dismutase involved in chlorate metabolism Alicycliphilus sp.
1.13.11.49 CLD
-
 Alicycliphilus denitrificans
1.13.11.49 CLD
-
 Alicycliphilus sp.
1.97.1.1 chlorate reductase
-
 Alicycliphilus denitrificans
1.97.1.1 chlorate reductase involved in chlorate metabolism Alicycliphilus sp.
1.97.1.1 clr
-
 Alicycliphilus sp.

Temperature Optimum [°C]

EC Number Temperature Optimum [°C] Temperature Optimum Maximum [°C] Comment Organism
1.97.1.1 30
-
 activity assay Alicycliphilus denitrificans