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  • van der Werf, M.J.; Swarts, H.J.; de Bont, J.A.
    Rhodococcus erythropolis DCL14 contains a novel degradation pathway for limonene (1999), Appl. Environ. Microbiol., 65, 2092-2102.
    View publication on PubMedView publication on EuropePMC

Activating Compound

EC Number Activating Compound Comment Organism Structure
1.14.13.107 additional information induction by limonene Rhodococcus erythropolis

Localization

EC Number Localization Comment Organism GeneOntology No. Textmining
1.14.13.107 soluble
-
Rhodococcus erythropolis
-
-

Natural Substrates/ Products (Substrates)

EC Number Natural Substrates Organism Comment (Nat. Sub.) Natural Products Comment (Nat. Pro.) Rev. Reac.
1.1.1.297 additional information Rhodococcus erythropolis enzymatic activities is involved in the limonene degradation pathway ?
-
?
1.1.1.297 additional information Rhodococcus erythropolis DCL14 enzymatic activities is involved in the limonene degradation pathway ?
-
?
1.14.13.105 additional information Rhodococcus erythropolis NADPH-dependent 1-hydroxy-2-oxolimonene 1,2-monooxygenase is involved in the limonene degradation pathway ?
-
?
1.14.13.105 additional information Rhodococcus erythropolis DCL14 NADPH-dependent 1-hydroxy-2-oxolimonene 1,2-monooxygenase is involved in the limonene degradation pathway ?
-
?
1.14.13.107 (4R)-limonene + NADH + H+ + O2 Rhodococcus erythropolis a step in the limonene degradation pathway. (1S,2S,4R)-Limonene-1,2-diol, (1S,4R)-1-hydroxy-2-oxolimonene, and (3R)-3-isopropenyl-6-oxoheptanoate are intermediates in the (4R)-limonene degradation pathway, , metabolite identification by mass spectrometry 1,2-epoxymenth-8-ene + NAD+ + H2O
-
?
1.14.13.107 (4R)-limonene + NADH + H+ + O2 Rhodococcus erythropolis DCL14 a step in the limonene degradation pathway. (1S,2S,4R)-Limonene-1,2-diol, (1S,4R)-1-hydroxy-2-oxolimonene, and (3R)-3-isopropenyl-6-oxoheptanoate are intermediates in the (4R)-limonene degradation pathway, , metabolite identification by mass spectrometry 1,2-epoxymenth-8-ene + NAD+ + H2O
-
?
1.14.13.107 (4S)-limonene + NADH + H+ + O2 Rhodococcus erythropolis a step in the limonene degradation pathway. (1R,2R,4S)-Limonene-1,2-diol, (1R,4S)-1-hydroxy-2-oxolimonene, and (3S)-3-isopropenyl-6-oxoheptanoate are intermediates in the (4S)-limonene degradation pathway, metabolite identification by mass spectrometry 1,2-epoxymenth-8-ene + NAD+ + H2O
-
?
1.14.13.107 (4S)-limonene + NADH + H+ + O2 Rhodococcus erythropolis DCL14 a step in the limonene degradation pathway. (1R,2R,4S)-Limonene-1,2-diol, (1R,4S)-1-hydroxy-2-oxolimonene, and (3S)-3-isopropenyl-6-oxoheptanoate are intermediates in the (4S)-limonene degradation pathway, metabolite identification by mass spectrometry 1,2-epoxymenth-8-ene + NAD+ + H2O
-
?
1.14.13.107 additional information Rhodococcus erythropolis strain DCL14 is able to grow on limonene as a sole source of carbon and energy, but also assimilates the terpenes limonene-1,2-epoxide, limonene-1,2-diol, carveol, carvone, and (-)-menthol, while perillyl alcohol is not utilized as a carbon and energy source ?
-
?
1.14.13.107 additional information Rhodococcus erythropolis DCL14 strain DCL14 is able to grow on limonene as a sole source of carbon and energy, but also assimilates the terpenes limonene-1,2-epoxide, limonene-1,2-diol, carveol, carvone, and (-)-menthol, while perillyl alcohol is not utilized as a carbon and energy source ?
-
?

Organism

EC Number Organism UniProt Comment Textmining
1.1.1.297 Rhodococcus erythropolis
-
DCL14
-
1.1.1.297 Rhodococcus erythropolis DCL14
-
DCL14
-
1.14.13.105 Rhodococcus erythropolis
-
-
-
1.14.13.105 Rhodococcus erythropolis DCL14
-
-
-
1.14.13.107 Rhodococcus erythropolis Q9EUT9 isolated from a freshwater sediment sample
-
1.14.13.107 Rhodococcus erythropolis DCL14 Q9EUT9 isolated from a freshwater sediment sample
-

Source Tissue

EC Number Source Tissue Comment Organism Textmining
1.14.13.105 culture condition:(4R)-limonene-grown cell
-
Rhodococcus erythropolis
-
1.14.13.107 cell culture temperatures greater than 30°C inhibit growth completely. Growth rates on different substrates, overview Rhodococcus erythropolis
-

Substrates and Products (Substrate)

EC Number Substrates Comment Substrates Organism Products Comment (Products) Rev. Reac.
1.1.1.297 (1R,2R,4S)-limonene-1,2-diol + NAD+
-
Rhodococcus erythropolis (1R,4S)-1-hydroxy-2-oxolimonene + (1R,2S,4S)-limonene-1,2-diol + NADH + H+
-
?
1.1.1.297 (1R,2R,4S)-limonene-1,2-diol + NAD+
-
Rhodococcus erythropolis DCL14 (1R,4S)-1-hydroxy-2-oxolimonene + (1R,2S,4S)-limonene-1,2-diol + NADH + H+
-
?
1.1.1.297 (1S,2S,4R)-limonene-1,2-diol + NAD+
-
Rhodococcus erythropolis (1S,4R)-1-hydroxy-2-oxolimonene + NADH + H+
-
?
1.1.1.297 (1S,2S,4R)-limonene-1,2-diol + NAD+
-
Rhodococcus erythropolis DCL14 (1S,4R)-1-hydroxy-2-oxolimonene + NADH + H+
-
?
1.1.1.297 additional information enzymatic activities is involved in the limonene degradation pathway Rhodococcus erythropolis ?
-
?
1.1.1.297 additional information enzymatic activities is involved in the limonene degradation pathway Rhodococcus erythropolis DCL14 ?
-
?
1.14.13.105 (1R,4S)-1-hydroxy-2-oxolimonene + NADPH + H+ + O2
-
Rhodococcus erythropolis (3S)-3-isopropenyl-6-oxoheptanoate + NADP+ + H2O
-
?
1.14.13.105 (1R,4S)-1-hydroxy-2-oxolimonene + NADPH + H+ + O2
-
Rhodococcus erythropolis DCL14 (3S)-3-isopropenyl-6-oxoheptanoate + NADP+ + H2O
-
?
1.14.13.105 (1S,4R)-1-hydroxy-2-oxolimonene + NADPH + H+ + O2
-
Rhodococcus erythropolis (3R)-3-isopropenyl-6-oxoheptanoate + NADP+ + H2O
-
?
1.14.13.105 dihydrocarvone + NADPH + O2 no activity with NADH Rhodococcus erythropolis 4-isopropenyl-7-methyl-2-oxo-oxepanone + NADP+ + H2O
-
?
1.14.13.105 additional information NADPH-dependent 1-hydroxy-2-oxolimonene 1,2-monooxygenase is involved in the limonene degradation pathway Rhodococcus erythropolis ?
-
?
1.14.13.105 additional information NADPH-dependent 1-hydroxy-2-oxolimonene 1,2-monooxygenase is involved in the limonene degradation pathway Rhodococcus erythropolis DCL14 ?
-
?
1.14.13.107 (4R)-limonene + NADH + H+ + O2 a step in the limonene degradation pathway. (1S,2S,4R)-Limonene-1,2-diol, (1S,4R)-1-hydroxy-2-oxolimonene, and (3R)-3-isopropenyl-6-oxoheptanoate are intermediates in the (4R)-limonene degradation pathway, , metabolite identification by mass spectrometry Rhodococcus erythropolis 1,2-epoxymenth-8-ene + NAD+ + H2O
-
?
1.14.13.107 (4R)-limonene + NADH + H+ + O2 oxygen-dependent reaction Rhodococcus erythropolis 1,2-epoxymenth-8-ene + NAD+ + H2O
-
?
1.14.13.107 (4R)-limonene + NADH + H+ + O2 a step in the limonene degradation pathway. (1S,2S,4R)-Limonene-1,2-diol, (1S,4R)-1-hydroxy-2-oxolimonene, and (3R)-3-isopropenyl-6-oxoheptanoate are intermediates in the (4R)-limonene degradation pathway, , metabolite identification by mass spectrometry Rhodococcus erythropolis DCL14 1,2-epoxymenth-8-ene + NAD+ + H2O
-
?
1.14.13.107 (4R)-limonene + NADH + H+ + O2 oxygen-dependent reaction Rhodococcus erythropolis DCL14 1,2-epoxymenth-8-ene + NAD+ + H2O
-
?
1.14.13.107 (4S)-limonene + NADH + H+ + O2 a step in the limonene degradation pathway. (1R,2R,4S)-Limonene-1,2-diol, (1R,4S)-1-hydroxy-2-oxolimonene, and (3S)-3-isopropenyl-6-oxoheptanoate are intermediates in the (4S)-limonene degradation pathway, metabolite identification by mass spectrometry Rhodococcus erythropolis 1,2-epoxymenth-8-ene + NAD+ + H2O
-
?
1.14.13.107 (4S)-limonene + NADH + H+ + O2 oxygen-dependent reaction Rhodococcus erythropolis 1,2-epoxymenth-8-ene + NAD+ + H2O
-
?
1.14.13.107 (4S)-limonene + NADH + H+ + O2 a step in the limonene degradation pathway. (1R,2R,4S)-Limonene-1,2-diol, (1R,4S)-1-hydroxy-2-oxolimonene, and (3S)-3-isopropenyl-6-oxoheptanoate are intermediates in the (4S)-limonene degradation pathway, metabolite identification by mass spectrometry Rhodococcus erythropolis DCL14 1,2-epoxymenth-8-ene + NAD+ + H2O
-
?
1.14.13.107 (4S)-limonene + NADH + H+ + O2 oxygen-dependent reaction Rhodococcus erythropolis DCL14 1,2-epoxymenth-8-ene + NAD+ + H2O
-
?
1.14.13.107 additional information strain DCL14 is able to grow on limonene as a sole source of carbon and energy, but also assimilates the terpenes limonene-1,2-epoxide, limonene-1,2-diol, carveol, carvone, and (-)-menthol, while perillyl alcohol is not utilized as a carbon and energy source Rhodococcus erythropolis ?
-
?
1.14.13.107 additional information strain DCL14 is able to grow on limonene as a sole source of carbon and energy, but also assimilates the terpenes limonene-1,2-epoxide, limonene-1,2-diol, carveol, carvone, and (-)-menthol, while perillyl alcohol is not utilized as a carbon and energy source Rhodococcus erythropolis DCL14 ?
-
?

Synonyms

EC Number Synonyms Comment Organism
1.14.13.105 Baeyer-Villiger monooxygenase
-
Rhodococcus erythropolis
1.14.13.105 dihydrocarvone 1,2-monooxygenase
-
Rhodococcus erythropolis
1.14.13.105 NADPH-dependent 1-hydroxy-2-oxolimonene 1,2-monooxygenase
-
Rhodococcus erythropolis
1.14.13.105 NADPH-dependent dihydrocarvone monooxygenase
-
Rhodococcus erythropolis

Temperature Optimum [°C]

EC Number Temperature Optimum [°C] Temperature Optimum Maximum [°C] Comment Organism
1.14.13.107 30
-
assay at Rhodococcus erythropolis

pH Optimum

EC Number pH Optimum Minimum pH Optimum Maximum Comment Organism
1.14.13.105 8
-
-
Rhodococcus erythropolis
1.14.13.107 7
-
assay at Rhodococcus erythropolis

Cofactor

EC Number Cofactor Comment Organism Structure
1.14.13.107 FAD dependent on Rhodococcus erythropolis
1.14.13.107 additional information the enzyme is no cytochrome P-450-enzyme Rhodococcus erythropolis
1.14.13.107 NADH dependent on Rhodococcus erythropolis