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Literature summary extracted from
- When alls zed and done: the structure and function of RNase Z in prokaryotes (2007), Nat. Rev. Microbiol., 5, 278-286.
Crystallization (Commentary)
| EC Number | Crystallization (Comment) | Organism |
|---|---|---|
| 3.1.26.11 | structures of free and RNA-bound prokaryotic tRNase Z proteins compared, overview, electrostatic surface representation, catalytic site and cleavage mechanism indicated, overview | Escherichia coli |
Organism
| EC Number | Organism | UniProt | Comment | Textmining |
|---|---|---|---|---|
| 3.1.26.11 | Aspergillus nidulans | - |
tRNase Z, overview | - |
| 3.1.26.11 | Bacillus subtilis | P54548 | tRNase Z in prokaryotes, overview | - |
| 3.1.26.11 | Bacteroides fragilis | - |
tRNase Z in prokaryotes and archae, overview | - |
| 3.1.26.11 | Bombyx mori | - |
tRNase Z, overview | - |
| 3.1.26.11 | Bradyrhizobium japonicum | - |
tRNase Z in prokaryotes and archae, overview | - |
| 3.1.26.11 | Caenorhabditis elegans | - |
tRNase Z, overview | - |
| 3.1.26.11 | Chlamydia trachomatis | - |
tRNase Z in prokaryotes and archae, overview | - |
| 3.1.26.11 | Clostridium acetobutylicum | - |
tRNase Z in prokaryotes and archae, overview | - |
| 3.1.26.11 | Clostridium spp. | - |
tRNase Z in prokaryotes and archae, overview | - |
| 3.1.26.11 | Deinococcus radiodurans | - |
tRNase Z in prokaryotes and archae, overview | - |
| 3.1.26.11 | Drosophila melanogaster | - |
tRNase Z, overview | - |
| 3.1.26.11 | Escherichia coli | - |
tRNase Z in prokaryotes, overview | - |
| 3.1.26.11 | Haloquadratum walsbyi | - |
tRNase Z in prokaryotes and archae, overview | - |
| 3.1.26.11 | Lacticaseibacillus casei | - |
tRNase Z in prokaryotes and archae, overview | - |
| 3.1.26.11 | Listeria monocytogenes | - |
tRNase Z in prokaryotes and archae, overview | - |
| 3.1.26.11 | Methanocaldococcus jannaschii | - |
tRNase Z in prokaryotes and archae, overview | - |
| 3.1.26.11 | Methanococcoides burtonii | - |
tRNase Z in prokaryotes and archae, overview | - |
| 3.1.26.11 | Mycobacterium tuberculosis | - |
tRNase Z in prokaryotes and archae, overview | - |
| 3.1.26.11 | Myxococcus xanthus | - |
tRNase Z in prokaryotes and archae, overview | - |
| 3.1.26.11 | Nanoarchaeum equitans | - |
tRNase Z in prokaryotes and archae, overview | - |
| 3.1.26.11 | Prochlorococcus marinus | - |
tRNase Z in prokaryotes and archae, overview | - |
| 3.1.26.11 | Saccharolobus solfataricus | - |
tRNase Z in prokaryotes and archae, overview | - |
| 3.1.26.11 | Saccharomyces cerevisiae | - |
tRNase Z in prokaryotes, overview | - |
| 3.1.26.11 | Staphylococcus aureus | - |
tRNase Z in prokaryotes and archae, overview | - |
| 3.1.26.11 | Streptococcus pneumoniae | - |
tRNase Z in prokaryotes and archae, overview | - |
| 3.1.26.11 | Streptomyces coelicolor | - |
tRNase Z in prokaryotes and archae, overview | - |
| 3.1.26.11 | Thermotoga maritima | - |
tRNase Z in prokaryotes, overview | - |
| 3.1.26.11 | Treponema pallidum | - |
tRNase Z in prokaryotes and archae, overview | - |
| 3.1.26.11 | Xenopus laevis | - |
tRNase Z, overview | - |
Specific Activity [micromol/min/mg]
| EC Number | Specific Activity Minimum [µmol/min/mg] | Specific Activity Maximum [µmol/min/mg] | Comment | Organism |
|---|---|---|---|---|
| 3.1.26.11 | additional information | - |
evidences for sigmoidal saturation kinetics discussed | Escherichia coli |
Substrates and Products (Substrate)
| EC Number | Substrates | Comment Substrates | Organism | Products | Comment (Products) | Rev. | Reac. |
|---|---|---|---|---|---|---|---|
| 3.1.26.11 | bis(p-nitrophenyl)phosphate + H2O | evidences for sigmoidal saturation kinetics with the small chromogenic phosphodiester substrate reviewed | Escherichia coli | p-nitrophenol + p-nitrophenyl phosphate | - |
? |  |
Synonyms
| EC Number | Synonyms | Comment | Organism |
|---|---|---|---|
| 3.1.26.11 | tRNase Z | - |
Drosophila melanogaster |
| 3.1.26.11 | tRNase Z | - |
Staphylococcus aureus |
| 3.1.26.11 | tRNase Z | - |
Chlamydia trachomatis |
| 3.1.26.11 | tRNase Z | - |
Escherichia coli |
| 3.1.26.11 | tRNase Z | - |
Saccharomyces cerevisiae |
| 3.1.26.11 | tRNase Z | - |
Bombyx mori |
| 3.1.26.11 | tRNase Z | - |
Aspergillus nidulans |
| 3.1.26.11 | tRNase Z | - |
Bradyrhizobium japonicum |
| 3.1.26.11 | tRNase Z | - |
Streptococcus pneumoniae |
| 3.1.26.11 | tRNase Z | - |
Lacticaseibacillus casei |
| 3.1.26.11 | tRNase Z | - |
Xenopus laevis |
| 3.1.26.11 | tRNase Z | - |
Caenorhabditis elegans |
| 3.1.26.11 | tRNase Z | - |
Mycobacterium tuberculosis |
| 3.1.26.11 | tRNase Z | - |
Bacteroides fragilis |
| 3.1.26.11 | tRNase Z | - |
Myxococcus xanthus |
| 3.1.26.11 | tRNase Z | - |
Streptomyces coelicolor |
| 3.1.26.11 | tRNase Z | - |
Saccharolobus solfataricus |
| 3.1.26.11 | tRNase Z | - |
Clostridium spp. |
| 3.1.26.11 | tRNase Z | - |
Clostridium acetobutylicum |
| 3.1.26.11 | tRNase Z | - |
Methanocaldococcus jannaschii |
| 3.1.26.11 | tRNase Z | - |
Thermotoga maritima |
| 3.1.26.11 | tRNase Z | - |
Deinococcus radiodurans |
| 3.1.26.11 | tRNase Z | - |
Listeria monocytogenes |
| 3.1.26.11 | tRNase Z | - |
Treponema pallidum |
| 3.1.26.11 | tRNase Z | - |
Prochlorococcus marinus |
| 3.1.26.11 | tRNase Z | - |
Bacillus subtilis |
| 3.1.26.11 | tRNase Z | - |
Nanoarchaeum equitans |
| 3.1.26.11 | tRNase Z | - |
Haloquadratum walsbyi |
| 3.1.26.11 | tRNase Z | - |
Methanococcoides burtonii |
| 3.1.26.11 | Trz | - |
Escherichia coli |
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