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Literature summary for 5.6.2.2 extracted from

  • Hanaoka, K.; Shoji, M.; Kondo, D.; Sato, A.; Yang, M.Y.; Kamiya, K.; Shiraishi, K.
    Substrate-mediated proton relay mechanism for the religation reaction in topoisomerase II (2013), J. Biomol. Struct. Dyn., 32, 1759-1765.
    View publication on PubMed

Organism

Organism UniProt Comment Textmining
Saccharomyces cerevisiae
-
-
-

Reaction

Reaction Comment Organism Reaction ID
ATP-dependent breakage, passage and rejoining of double-stranded DNA metal-dependent general acid-base catalysis, quantum mechanical/molecular mechanical calculations for the topo II religation reaction, substrate-mediated proton transfer pathway, which involves the 3'-OH nucleophile, the reactive phosphate, water, Arg781, and Tyr782, metal A stabilizes the transition states, which is consistent with a two-metal mechanism in topo II, overview Saccharomyces cerevisiae

Synonyms

Synonyms Comment Organism
topo II
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Saccharomyces cerevisiae
Topoisomerase II
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Saccharomyces cerevisiae