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Literature summary for 5.3.2.5 extracted from
- RuBisCO-like proteins as the enolase enzyme in the methionine salvage pathway: functional and evolutionary relationships between RuBisCO-like proteins and photosynthetic RuBisCO (2008), J. Exp. Bot., 59, 1543-1554.
Cloned(Commentary)
| Cloned (Comment) | Organism |
|---|---|
| Bacillus subtilis RLPalpha-1 sequence determination and analysis, and phylogenetic analysis | Bacillus subtilis |
| Geobacillus kaustophilis RLPalpha-1 sequence determination and analysis, and phylogenetic analysis | Geobacillus kaustophilus |
| Microcystis aeruginosa RLPalpha-1 sequence determination and analysis, and phylogenetic analysis | Microcystis aeruginosa |
| Rhodopseudomonas palustris RLPalpha-1 sequence determination and analysis, and phylogenetic analysis | Rhodopseudomonas palustris |
| Rhodospirillum rubrum RLPalpha-1 sequence determination and analysis, and phylogenetic analysis | Rhodospirillum rubrum |
Metals/Ions
| Metals/Ions | Comment | Organism | Structure |
|---|---|---|---|
| Mg2+ | required | Bacillus subtilis |  |
| Mg2+ | required | Rhodopseudomonas palustris | |
| Mg2+ | required | Rhodospirillum rubrum | |
| Mg2+ | required | Microcystis aeruginosa | |
| Mg2+ | required | Geobacillus kaustophilus | |
Natural Substrates/ Products (Substrates)
| Natural Substrates | Organism | Comment (Nat. Sub.) | Natural Products | Comment (Nat. Pro.) | Rev. | Reac. |
|---|---|---|---|---|---|---|
| 5-(methylthio)-2,3-dioxopentyl phosphate | Bacillus subtilis | - |
2-hydroxy-5-(methylthio)-3-oxopent-1-enyl phosphate | - |
? | |
| 5-(methylthio)-2,3-dioxopentyl phosphate | Rhodopseudomonas palustris | - |
2-hydroxy-5-(methylthio)-3-oxopent-1-enyl phosphate | - |
? | |
| 5-(methylthio)-2,3-dioxopentyl phosphate | Rhodospirillum rubrum | - |
2-hydroxy-5-(methylthio)-3-oxopent-1-enyl phosphate | - |
? | |
| 5-(methylthio)-2,3-dioxopentyl phosphate | Microcystis aeruginosa | - |
2-hydroxy-5-(methylthio)-3-oxopent-1-enyl phosphate | - |
? | |
| 5-(methylthio)-2,3-dioxopentyl phosphate | Geobacillus kaustophilus | - |
2-hydroxy-5-(methylthio)-3-oxopent-1-enyl phosphate | - |
? | |
Organism
| Organism | UniProt | Comment | Textmining |
|---|---|---|---|
| Bacillus subtilis | - |
- |
- |
| Geobacillus kaustophilus | - |
- |
- |
| Microcystis aeruginosa | - |
- |
- |
| Rhodopseudomonas palustris | - |
- |
- |
| Rhodospirillum rubrum | - |
- |
- |
Reaction
| Reaction | Comment | Organism | Reaction ID |
|---|---|---|---|
| 5-(methylsulfanyl)-2,3-dioxopentyl phosphate = 2-hydroxy-5-(methylsulfanyl)-3-oxopent-1-enyl phosphate | reaction mechanism, overview | Bacillus subtilis | |
| 5-(methylsulfanyl)-2,3-dioxopentyl phosphate = 2-hydroxy-5-(methylsulfanyl)-3-oxopent-1-enyl phosphate | reaction mechanism, overview | Rhodopseudomonas palustris | |
| 5-(methylsulfanyl)-2,3-dioxopentyl phosphate = 2-hydroxy-5-(methylsulfanyl)-3-oxopent-1-enyl phosphate | reaction mechanism, overview | Rhodospirillum rubrum | |
| 5-(methylsulfanyl)-2,3-dioxopentyl phosphate = 2-hydroxy-5-(methylsulfanyl)-3-oxopent-1-enyl phosphate | reaction mechanism, overview | Microcystis aeruginosa | |
| 5-(methylsulfanyl)-2,3-dioxopentyl phosphate = 2-hydroxy-5-(methylsulfanyl)-3-oxopent-1-enyl phosphate | reaction mechanism, overview | Geobacillus kaustophilus |
Substrates and Products (Substrate)
| Substrates | Comment Substrates | Organism | Products | Comment (Products) | Rev. | Reac. |
|---|---|---|---|---|---|---|
| 5-(methylthio)-2,3-dioxopentyl phosphate | - |
Bacillus subtilis | 2-hydroxy-5-(methylthio)-3-oxopent-1-enyl phosphate | - |
? | |
| 5-(methylthio)-2,3-dioxopentyl phosphate | - |
Rhodopseudomonas palustris | 2-hydroxy-5-(methylthio)-3-oxopent-1-enyl phosphate | - |
? | |
| 5-(methylthio)-2,3-dioxopentyl phosphate | - |
Rhodospirillum rubrum | 2-hydroxy-5-(methylthio)-3-oxopent-1-enyl phosphate | - |
? | |
| 5-(methylthio)-2,3-dioxopentyl phosphate | - |
Microcystis aeruginosa | 2-hydroxy-5-(methylthio)-3-oxopent-1-enyl phosphate | - |
? | |
| 5-(methylthio)-2,3-dioxopentyl phosphate | - |
Geobacillus kaustophilus | 2-hydroxy-5-(methylthio)-3-oxopent-1-enyl phosphate | - |
? | |
Synonyms
| Synonyms | Comment | Organism |
|---|---|---|
| DK-MTP-1-P enolase | - |
Bacillus subtilis |
| DK-MTP-1-P enolase | - |
Rhodopseudomonas palustris |
| DK-MTP-1-P enolase | - |
Rhodospirillum rubrum |
| DK-MTP-1-P enolase | - |
Microcystis aeruginosa |
| DK-MTP-1-P enolase | - |
Geobacillus kaustophilus |
| RLP | - |
Bacillus subtilis |
| RLP | - |
Rhodopseudomonas palustris |
| RLP | - |
Rhodospirillum rubrum |
| RLP | - |
Microcystis aeruginosa |
| RLP | - |
Geobacillus kaustophilus |
| RuBisCO-like protein | - |
Bacillus subtilis |
| RuBisCO-like protein | - |
Rhodopseudomonas palustris |
| RuBisCO-like protein | - |
Rhodospirillum rubrum |
| RuBisCO-like protein | - |
Microcystis aeruginosa |
| RuBisCO-like protein | - |
Geobacillus kaustophilus |
General Information
| General Information | Comment | Organism |
|---|---|---|
| evolution | the Bacillus subtilis enzyme belongs to the RLPalpha-1 enzyme group, functional and evolutionary relationships between Bacillus subtilis RLP of the methionine salvage pathway, other RLPs, and photosynthetic RuBisCO, overview | Bacillus subtilis |
| evolution | the Geobacillus kaustophilis enzyme belongs to the RLPalpha-1 enzyme group, functional and evolutionary relationships between Bacillus subtilis RLP of the methionine salvage pathway, other RLPs, and photosynthetic RuBisCO, overview | Geobacillus kaustophilus |
| evolution | the Microcystis aeruginosa enzyme belongs to the RLPalpha-1 enzyme group, functional and evolutionary relationships between Bacillus subtilis RLP of the methionine salvage pathway, other RLPs, and photosynthetic RuBisCO, overview | Microcystis aeruginosa |
| evolution | the Rhodopseudomonas palustris enzyme belongs to the RLPalpha-1 enzyme group, functional and evolutionary relationships between Bacillus subtilis RLP of the methionine salvage pathway, other RLPs, and photosynthetic RuBisCO, overview | Rhodopseudomonas palustris |
| evolution | the Rhodospirillum rubrum enzyme belongs to the RLPalpha-1 enzyme group, functional and evolutionary relationships between Bacillus subtilis RLP of the methionine salvage pathway, other RLPs, and photosynthetic RuBisCO, overview | Rhodospirillum rubrum |
| metabolism | Bacillus subtilis RLP is involved in the methionine salvage pathway, overview | Bacillus subtilis |
| metabolism | Geobacillus kaustophilis RLP is involved in the methionine salvage pathway, overview | Geobacillus kaustophilus |
| metabolism | Microcystis aeruginosa RLP is involved in the methionine salvage pathway, overview | Microcystis aeruginosa |
| metabolism | Rhodopseudomonas palustris RLP is involved in the methionine salvage pathway, it utilizes the methionine salvage pathway because it can grow using 5-methyladenosine as the sole source of sulfur, although the reaction step of DK-MTP-1-P enolase may be catalysed by a photosynthetic form II RuBisCO and not by RLPs, overview | Rhodopseudomonas palustris |
| metabolism | Rhodospirillum rubrum RLP is involved in the methionine salvage pathway, it utilizes the methionine salvage pathway because it can grow using 5-methyladenosine as the sole source of sulfur, although the reaction step of DK-MTP-1-P enolase may be catalysed by a photosynthetic form II RuBisCO and not by RLPs, overview | Rhodospirillum rubrum |
| additional information | conserved residues Asn123, Lys175, Lys201, Asp203, and His204 are essential for the enolization reaction of DK-MTP-1-P enolase | Rhodopseudomonas palustris |
| additional information | conserved residues Asn123, Lys175, Lys201, Asp203, and His204 are essential for the enolization reaction of DK-MTP-1-P enolase | Rhodospirillum rubrum |
| additional information | conserved residues Lys123, Lys175, Lys201, Asp203, and Glu204 that are essential for the enolization reaction of DK-MTP-1-P enolase | Bacillus subtilis |
| additional information | conserved residues Lys123, Lys175, Lys201, Asp203, and Glu204 that are essential for the enolization reaction of DK-MTP-1-P enolase | Microcystis aeruginosa |
| additional information | conserved residues Lys123, Lys175, Lys201, Asp203, and Glu204 that are essential for the enolization reaction of DK-MTP-1-P enolase | Geobacillus kaustophilus |
| physiological function | Bacillus subtilis RLP catalyses an analogous reaction to photosynthetic RuBisCO since its substrate resembles the structure of RuBP, rationalizing the tight linkage between RLPs and RuBisCO. But Bacillus subtilis RLP functions as an enzyme in a different metabolic pathway from that of RuBisCO, overview | Bacillus subtilis |
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