BRENDA - Enzyme Database
show all sequences of 5.3.1.15

Substrate specificity of a recombinant D-lyxose isomerase from Providencia stuartii for monosaccharides

Kwon, H.J.; Yeom, S.J.; Park, C.S.; Oh, D.K.; J. Biosci. Bioeng. 110, 26-31 (2010)

Data extracted from this reference:

Application
Application
Commentary
Organism
food industry
the enzyme is an industrial producer of D-lyxose
Providencia stuartii
Cloned(Commentary)
Cloned (Commentary)
Organism
expressed in Escherichia coli ER2566 cells
Providencia stuartii
Inhibitors
Inhibitors
Commentary
Organism
Structure
Ba2+
about 80% residual activity at 1 mM
Providencia stuartii
Co2+
about 15% residual activity at 1 mM
Providencia stuartii
Cu2+
about 55% residual activity at 1 mM
Providencia stuartii
EDTA
12% residual activity at 1 mM
Providencia stuartii
Fe2+
about 60% residual activity at 1 mM
Providencia stuartii
additional information
not affected by Ca2+
Providencia stuartii
Zn2+
about 60% residual activity at 1 mM
Providencia stuartii
KM Value [mM]
KM Value [mM]
KM Value Maximum [mM]
Substrate
Commentary
Organism
Structure
22
-
D-mannose
in 50 mM HEPES buffer, at pH 7.5, 45°C
Providencia stuartii
38
-
D-xylulose
in 50 mM HEPES buffer, at pH 7.5, 45°C
Providencia stuartii
47
-
D-Lyxose
in 50 mM HEPES buffer, at pH 7.5, 45°C
Providencia stuartii
54
-
D-fructose
in 50 mM HEPES buffer, at pH 7.5, 45°C
Providencia stuartii
Metals/Ions
Metals/Ions
Commentary
Organism
Structure
Mg2+
about 150% activity at 1 mM Mg2+
Providencia stuartii
Mn2+
maximal activity (about 250%) in the presence of 1 mM Mn2+
Providencia stuartii
Molecular Weight [Da]
Molecular Weight [Da]
Molecular Weight Maximum [Da]
Commentary
Organism
22000
-
2 * 22000, SDS-PAGE
Providencia stuartii
22160
-
2 * 22160, calculated from amino acid sequence
Providencia stuartii
44000
-
gel filtration
Providencia stuartii
Organism
Organism
UniProt
Commentary
Textmining
Providencia stuartii
-
-
-
Providencia stuartii KCTC 2568
-
-
-
Purification (Commentary)
Purification (Commentary)
Organism
His-Trap column chromatography, gel filtration
Providencia stuartii
Specific Activity [micromol/min/mg]
Specific Activity Minimum [µmol/min/mg]
Specific Activity Maximum [µmol/min/mg]
Commentary
Organism
0.002
-
using L-tagatose as substrate, at pH 7.5 and 45°C
Providencia stuartii
0.003
-
using L-mannose as substrate, at pH 7.5 and 45°C
Providencia stuartii
0.005
-
using D-psicose as substrate, at pH 7.5 and 45°C
Providencia stuartii
0.007
-
using L-lyxose as substrate, at pH 7.5 and 45°C
Providencia stuartii
0.01
-
using L-psicose as substrate, at pH 7.5 and 45°C
Providencia stuartii
0.011
-
using L-talose as substrate, at pH 7.5 and 45°C
Providencia stuartii
0.013
-
using D-allose as substrate, at pH 7.5 and 45°C
Providencia stuartii
0.014
-
using D-ribose as substrate, at pH 7.5 and 45°C
Providencia stuartii
0.015
-
using D-tagatose as substrate, at pH 7.5 and 45°C
Providencia stuartii
0.017
-
using L-fructose as substrate, at pH 7.5 and 45°C
Providencia stuartii
0.022
-
using L-allose as substrate, at pH 7.5 and 45°C
Providencia stuartii
0.045
-
using D-tagatose as substrate, at pH 7.5 and 45°C
Providencia stuartii
0.096
-
using D-ribulose as substrate, at pH 7.5 and 45°C
Providencia stuartii
0.18
-
using L-xylulose as substrate, at pH 7.5 and 45°C
Providencia stuartii
0.219
-
using L-ribose as substrate, at pH 7.5 and 45°C
Providencia stuartii
0.403
-
using D-fructose as substrate, at pH 7.5 and 45°C
Providencia stuartii
0.523
-
using D-mannose as substrate, at pH 7.5 and 45°C
Providencia stuartii
0.872
-
using L-ribulose as substrate, at pH 7.5 and 45°C
Providencia stuartii
22.33
-
using D-lyxose as substrate, at pH 7.5 and 45°C
Providencia stuartii
24.04
-
using D-xylulose as substrate, at pH 7.5 and 45°C
Providencia stuartii
Substrates and Products (Substrate)
Substrates
Commentary Substrates
Literature (Substrates)
Organism
Products
Commentary (Products)
Literature (Products)
Organism (Products)
Reversibility
Substrate Product ID
D-Allose
-
715675
Providencia stuartii
D-Psicose
-
-
-
r
D-Allose
-
715675
Providencia stuartii KCTC 2568
D-Psicose
-
-
-
r
D-fructose
-
715675
Providencia stuartii
D-mannose
-
-
-
r
D-Lyxose
highest specific activity
715675
Providencia stuartii
D-Xylulose
-
-
-
r
D-Mannose
-
715675
Providencia stuartii
D-Fructose
-
-
-
r
D-Ribose
-
715675
Providencia stuartii
D-Ribulose
-
-
-
r
D-Ribose
-
715675
Providencia stuartii KCTC 2568
D-Ribulose
-
-
-
r
D-talose
-
715675
Providencia stuartii
D-tagatose
-
-
-
r
D-xylulose
-
715675
Providencia stuartii
D-lyxose
-
-
-
r
L-allose
-
715675
Providencia stuartii
L-psicose
-
-
-
r
L-Lyxose
-
715675
Providencia stuartii
L-Xylulose
-
-
-
r
L-Lyxose
-
715675
Providencia stuartii KCTC 2568
L-Xylulose
-
-
-
r
L-Mannose
-
715675
Providencia stuartii
L-Fructose
-
-
-
r
L-Mannose
-
715675
Providencia stuartii KCTC 2568
L-Fructose
-
-
-
r
L-ribose
-
715675
Providencia stuartii
L-ribulose
-
-
-
r
L-talose
-
715675
Providencia stuartii
L-tagatose
-
-
-
r
additional information
the enzyme does not isomerizes D-mannose 6-phosphate, D-glucose 6-phosphate, and D-ribose 6-phosphate
715675
Providencia stuartii
?
-
-
-
-
additional information
the enzyme does not isomerizes D-mannose 6-phosphate, D-glucose 6-phosphate, and D-ribose 6-phosphate
715675
Providencia stuartii KCTC 2568
?
-
-
-
-
Subunits
Subunits
Commentary
Organism
homodimer
2 * 22000, SDS-PAGE; 2 * 22160, calculated from amino acid sequence
Providencia stuartii
Synonyms
Synonyms
Commentary
Organism
D-Lyxose isomerase
-
Providencia stuartii
Temperature Optimum [°C]
Temperature Optimum [°C]
Temperature Optimum Maximum [°C]
Commentary
Organism
45
-
-
Providencia stuartii
Temperature Range [°C]
Temperature Minimum [°C]
Temperature Maximum [°C]
Commentary
Organism
40
50
at 40°C and 50°C, the activities are approximately 60% of the maximum
Providencia stuartii
Temperature Stability [°C]
Temperature Stability Minimum [°C]
Temperature Stability Maximum [°C]
Commentary
Organism
30
50
the enzyme shows half-lives of 36 h, 14 h, 8.9 h, 3.4 h, and 1.4 h at 30°C, 35°C, 40°C, 45°C, and 50 °C, respectively
Providencia stuartii
Turnover Number [1/s]
Turnover Number Minimum [1/s]
Turnover Number Maximum [1/s]
Substrate
Commentary
Organism
Structure
2010
-
D-fructose
in 50 mM HEPES buffer, at pH 7.5, 45°C
Providencia stuartii
2640
-
D-mannose
in 50 mM HEPES buffer, at pH 7.5, 45°C
Providencia stuartii
31340
-
D-Lyxose
in 50 mM HEPES buffer, at pH 7.5, 45°C
Providencia stuartii
34960
-
D-xylulose
in 50 mM HEPES buffer, at pH 7.5, 45°C
Providencia stuartii
pH Optimum
pH Optimum Minimum
pH Optimum Maximum
Commentary
Organism
7.5
-
-
Providencia stuartii
pH Range
pH Minimum
pH Maximum
Commentary
Organism
7
8.5
at pH 7.0 and 8.5, the activities are approximately 60% of the maximum
Providencia stuartii
Application (protein specific)
Application
Commentary
Organism
food industry
the enzyme is an industrial producer of D-lyxose
Providencia stuartii
Cloned(Commentary) (protein specific)
Commentary
Organism
expressed in Escherichia coli ER2566 cells
Providencia stuartii
Inhibitors (protein specific)
Inhibitors
Commentary
Organism
Structure
Ba2+
about 80% residual activity at 1 mM
Providencia stuartii
Co2+
about 15% residual activity at 1 mM
Providencia stuartii
Cu2+
about 55% residual activity at 1 mM
Providencia stuartii
EDTA
12% residual activity at 1 mM
Providencia stuartii
Fe2+
about 60% residual activity at 1 mM
Providencia stuartii
additional information
not affected by Ca2+
Providencia stuartii
Zn2+
about 60% residual activity at 1 mM
Providencia stuartii
KM Value [mM] (protein specific)
KM Value [mM]
KM Value Maximum [mM]
Substrate
Commentary
Organism
Structure
22
-
D-mannose
in 50 mM HEPES buffer, at pH 7.5, 45°C
Providencia stuartii
38
-
D-xylulose
in 50 mM HEPES buffer, at pH 7.5, 45°C
Providencia stuartii
47
-
D-Lyxose
in 50 mM HEPES buffer, at pH 7.5, 45°C
Providencia stuartii
54
-
D-fructose
in 50 mM HEPES buffer, at pH 7.5, 45°C
Providencia stuartii
Metals/Ions (protein specific)
Metals/Ions
Commentary
Organism
Structure
Mg2+
about 150% activity at 1 mM Mg2+
Providencia stuartii
Mn2+
maximal activity (about 250%) in the presence of 1 mM Mn2+
Providencia stuartii
Molecular Weight [Da] (protein specific)
Molecular Weight [Da]
Molecular Weight Maximum [Da]
Commentary
Organism
22000
-
2 * 22000, SDS-PAGE
Providencia stuartii
22160
-
2 * 22160, calculated from amino acid sequence
Providencia stuartii
44000
-
gel filtration
Providencia stuartii
Purification (Commentary) (protein specific)
Commentary
Organism
His-Trap column chromatography, gel filtration
Providencia stuartii
Specific Activity [micromol/min/mg] (protein specific)
Specific Activity Minimum [µmol/min/mg]
Specific Activity Maximum [µmol/min/mg]
Commentary
Organism
0.002
-
using L-tagatose as substrate, at pH 7.5 and 45°C
Providencia stuartii
0.003
-
using L-mannose as substrate, at pH 7.5 and 45°C
Providencia stuartii
0.005
-
using D-psicose as substrate, at pH 7.5 and 45°C
Providencia stuartii
0.007
-
using L-lyxose as substrate, at pH 7.5 and 45°C
Providencia stuartii
0.01
-
using L-psicose as substrate, at pH 7.5 and 45°C
Providencia stuartii
0.011
-
using L-talose as substrate, at pH 7.5 and 45°C
Providencia stuartii
0.013
-
using D-allose as substrate, at pH 7.5 and 45°C
Providencia stuartii
0.014
-
using D-ribose as substrate, at pH 7.5 and 45°C
Providencia stuartii
0.015
-
using D-tagatose as substrate, at pH 7.5 and 45°C
Providencia stuartii
0.017
-
using L-fructose as substrate, at pH 7.5 and 45°C
Providencia stuartii
0.022
-
using L-allose as substrate, at pH 7.5 and 45°C
Providencia stuartii
0.045
-
using D-tagatose as substrate, at pH 7.5 and 45°C
Providencia stuartii
0.096
-
using D-ribulose as substrate, at pH 7.5 and 45°C
Providencia stuartii
0.18
-
using L-xylulose as substrate, at pH 7.5 and 45°C
Providencia stuartii
0.219
-
using L-ribose as substrate, at pH 7.5 and 45°C
Providencia stuartii
0.403
-
using D-fructose as substrate, at pH 7.5 and 45°C
Providencia stuartii
0.523
-
using D-mannose as substrate, at pH 7.5 and 45°C
Providencia stuartii
0.872
-
using L-ribulose as substrate, at pH 7.5 and 45°C
Providencia stuartii
22.33
-
using D-lyxose as substrate, at pH 7.5 and 45°C
Providencia stuartii
24.04
-
using D-xylulose as substrate, at pH 7.5 and 45°C
Providencia stuartii
Substrates and Products (Substrate) (protein specific)
Substrates
Commentary Substrates
Literature (Substrates)
Organism
Products
Commentary (Products)
Literature (Products)
Organism (Products)
Reversibility
ID
D-Allose
-
715675
Providencia stuartii
D-Psicose
-
-
-
r
D-Allose
-
715675
Providencia stuartii KCTC 2568
D-Psicose
-
-
-
r
D-fructose
-
715675
Providencia stuartii
D-mannose
-
-
-
r
D-Lyxose
highest specific activity
715675
Providencia stuartii
D-Xylulose
-
-
-
r
D-Mannose
-
715675
Providencia stuartii
D-Fructose
-
-
-
r
D-Ribose
-
715675
Providencia stuartii
D-Ribulose
-
-
-
r
D-Ribose
-
715675
Providencia stuartii KCTC 2568
D-Ribulose
-
-
-
r
D-talose
-
715675
Providencia stuartii
D-tagatose
-
-
-
r
D-xylulose
-
715675
Providencia stuartii
D-lyxose
-
-
-
r
L-allose
-
715675
Providencia stuartii
L-psicose
-
-
-
r
L-Lyxose
-
715675
Providencia stuartii
L-Xylulose
-
-
-
r
L-Lyxose
-
715675
Providencia stuartii KCTC 2568
L-Xylulose
-
-
-
r
L-Mannose
-
715675
Providencia stuartii
L-Fructose
-
-
-
r
L-Mannose
-
715675
Providencia stuartii KCTC 2568
L-Fructose
-
-
-
r
L-ribose
-
715675
Providencia stuartii
L-ribulose
-
-
-
r
L-talose
-
715675
Providencia stuartii
L-tagatose
-
-
-
r
additional information
the enzyme does not isomerizes D-mannose 6-phosphate, D-glucose 6-phosphate, and D-ribose 6-phosphate
715675
Providencia stuartii
?
-
-
-
-
additional information
the enzyme does not isomerizes D-mannose 6-phosphate, D-glucose 6-phosphate, and D-ribose 6-phosphate
715675
Providencia stuartii KCTC 2568
?
-
-
-
-
Subunits (protein specific)
Subunits
Commentary
Organism
homodimer
2 * 22000, SDS-PAGE; 2 * 22160, calculated from amino acid sequence
Providencia stuartii
Temperature Optimum [°C] (protein specific)
Temperature Optimum [°C]
Temperature Optimum Maximum [°C]
Commentary
Organism
45
-
-
Providencia stuartii
Temperature Range [°C] (protein specific)
Temperature Minimum [°C]
Temperature Maximum [°C]
Commentary
Organism
40
50
at 40°C and 50°C, the activities are approximately 60% of the maximum
Providencia stuartii
Temperature Stability [°C] (protein specific)
Temperature Stability Minimum [°C]
Temperature Stability Maximum [°C]
Commentary
Organism
30
50
the enzyme shows half-lives of 36 h, 14 h, 8.9 h, 3.4 h, and 1.4 h at 30°C, 35°C, 40°C, 45°C, and 50 °C, respectively
Providencia stuartii
Turnover Number [1/s] (protein specific)
Turnover Number Minimum [1/s]
Turnover Number Maximum [1/s]
Substrate
Commentary
Organism
Structure
2010
-
D-fructose
in 50 mM HEPES buffer, at pH 7.5, 45°C
Providencia stuartii
2640
-
D-mannose
in 50 mM HEPES buffer, at pH 7.5, 45°C
Providencia stuartii
31340
-
D-Lyxose
in 50 mM HEPES buffer, at pH 7.5, 45°C
Providencia stuartii
34960
-
D-xylulose
in 50 mM HEPES buffer, at pH 7.5, 45°C
Providencia stuartii
pH Optimum (protein specific)
pH Optimum Minimum
pH Optimum Maximum
Commentary
Organism
7.5
-
-
Providencia stuartii
pH Range (protein specific)
pH Minimum
pH Maximum
Commentary
Organism
7
8.5
at pH 7.0 and 8.5, the activities are approximately 60% of the maximum
Providencia stuartii
KCat/KM [mM/s]
kcat/KM Value [1/mMs-1]
kcat/KM Value Maximum [1/mMs-1]
Substrate
Commentary
Organism
Structure
37
-
D-fructose
in 50 mM HEPES buffer, at pH 7.5, 45°C
Providencia stuartii
116
-
D-mannose
in 50 mM HEPES buffer, at pH 7.5, 45°C
Providencia stuartii
669
-
D-Lyxose
in 50 mM HEPES buffer, at pH 7.5, 45°C
Providencia stuartii
920
-
D-xylulose
in 50 mM HEPES buffer, at pH 7.5, 45°C
Providencia stuartii
KCat/KM [mM/s] (protein specific)
KCat/KM Value [1/mMs-1]
KCat/KM Value Maximum [1/mMs-1]
Substrate
Commentary
Organism
Structure
37
-
D-fructose
in 50 mM HEPES buffer, at pH 7.5, 45°C
Providencia stuartii
116
-
D-mannose
in 50 mM HEPES buffer, at pH 7.5, 45°C
Providencia stuartii
669
-
D-Lyxose
in 50 mM HEPES buffer, at pH 7.5, 45°C
Providencia stuartii
920
-
D-xylulose
in 50 mM HEPES buffer, at pH 7.5, 45°C
Providencia stuartii
Other publictions for EC 5.3.1.15
No.
1st author
Pub Med
title
organims
journal
volume
pages
year
Activating Compound
Application
Cloned(Commentary)
Crystallization (Commentary)
Engineering
General Stability
Inhibitors
KM Value [mM]
Localization
Metals/Ions
Molecular Weight [Da]
Natural Substrates/ Products (Substrates)
Organic Solvent Stability
Organism
Oxidation Stability
Posttranslational Modification
Purification (Commentary)
Reaction
Renatured (Commentary)
Source Tissue
Specific Activity [micromol/min/mg]
Storage Stability
Substrates and Products (Substrate)
Subunits
Synonyms
Temperature Optimum [°C]
Temperature Range [°C]
Temperature Stability [°C]
Turnover Number [1/s]
pH Optimum
pH Range
pH Stability
Cofactor
Ki Value [mM]
pI Value
IC50 Value
Activating Compound (protein specific)
Application (protein specific)
Cloned(Commentary) (protein specific)
Cofactor (protein specific)
Crystallization (Commentary) (protein specific)
Engineering (protein specific)
General Stability (protein specific)
IC50 Value (protein specific)
Inhibitors (protein specific)
Ki Value [mM] (protein specific)
KM Value [mM] (protein specific)
Localization (protein specific)
Metals/Ions (protein specific)
Molecular Weight [Da] (protein specific)
Natural Substrates/ Products (Substrates) (protein specific)
Organic Solvent Stability (protein specific)
Oxidation Stability (protein specific)
Posttranslational Modification (protein specific)
Purification (Commentary) (protein specific)
Renatured (Commentary) (protein specific)
Source Tissue (protein specific)
Specific Activity [micromol/min/mg] (protein specific)
Storage Stability (protein specific)
Substrates and Products (Substrate) (protein specific)
Subunits (protein specific)
Temperature Optimum [°C] (protein specific)
Temperature Range [°C] (protein specific)
Temperature Stability [°C] (protein specific)
Turnover Number [1/s] (protein specific)
pH Optimum (protein specific)
pH Range (protein specific)
pH Stability (protein specific)
pI Value (protein specific)
Expression
General Information
General Information (protein specific)
Expression (protein specific)
KCat/KM [mM/s]
KCat/KM [mM/s] (protein specific)
748502
Huang
Production of D-mannose from ...
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1
-
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1
-
-
-
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-
-
-
-
-
-
-
-
-
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-
747682
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27-33
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-
1
1
-
-
-
-
-
-
-
-
-
-
4
-
-
-
-
-
-
-
-
-
1
1
-
-
-
-
-
-
-
-
-
-
-
-
1
1
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
1
-
-
-
-
-
-
-
-
-
-
-
-
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-
749201
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-
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-
1
-
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-
3
3
-
4
1
-
-
2
-
-
-
-
-
-
-
-
6
1
-
1
-
3
3
1
1
-
-
-
-
-
-
1
-
-
-
-
-
-
3
-
3
-
4
1
-
-
-
-
-
-
-
-
-
6
1
1
-
3
3
1
1
-
-
-
-
-
-
3
3
727225
Choi
Characterization of a recombin ...
Dictyoglomus turgidum, Dictyoglomus turgidum DSM 6724
Biotechnol. Lett.
34
1079-1085
2012
-
-
1
-
-
-
2
4
-
2
2
2
-
2
-
-
1
-
-
-
11
-
16
1
-
1
-
1
4
1
-
-
-
-
-
-
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