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show all sequences of 5.3.1.14

Characterization of Mesorhizobium loti L-rhamnose isomerase and its application to L-talose production

Takata, G.; Uechi, K.; Taniguchi, E.; Kanbara, Y.; Yoshihara, A.; Morimoto, K.; Izumori, K.; Biosci. Biotechnol. Biochem. 75, 1006-1009 (2011)

Data extracted from this reference:

Cloned(Commentary)
Commentary
Organism
expressed in Escherichia coli JM109 cells
Mesorhizobium loti
Inhibitors
Inhibitors
Commentary
Organism
Structure
EDTA
enzyme activity is lost after EDTA treatment
Mesorhizobium loti
KM Value [mM]
KM Value [mM]
KM Value Maximum [mM]
Substrate
Commentary
Organism
Structure
2
3.4
L-Mannose
in 50 mM glycine-NaOH, pH 9.0, 1 mM MnCl2, at 60C
Mesorhizobium loti
5
-
L-rhamnose
in 50 mM glycine-NaOH, pH 9.0, 1 mM MnCl2, at 60C
Mesorhizobium loti
5.25
-
L-talose
in 50 mM glycine-NaOH, pH 9.0, 1 mM MnCl2, at 60C
Mesorhizobium loti
6.18
-
D-ribose
in 50 mM glycine-NaOH, pH 9.0, 1 mM MnCl2, at 60C
Mesorhizobium loti
7.11
-
D-Allose
in 50 mM glycine-NaOH, pH 9.0, 1 mM MnCl2, at 60C
Mesorhizobium loti
23.5
-
L-Lyxose
in 50 mM glycine-NaOH, pH 9.0, 1 mM MnCl2, at 60C
Mesorhizobium loti
Metals/Ions
Metals/Ions
Commentary
Organism
Structure
Mn2+
highest activity in the presence of Mn2+
Mesorhizobium loti
Molecular Weight [Da]
Molecular Weight [Da]
Molecular Weight Maximum [Da]
Commentary
Organism
46946
-
x * 46946, calculated from amino acid sequence
Mesorhizobium loti
Organism
Organism
Primary Accession No. (UniProt)
Commentary
Textmining
Mesorhizobium loti
-
-
-
Mesorhizobium loti Tono
-
-
-
Purification (Commentary)
Commentary
Organism
Ni-NTA column chromatography
Mesorhizobium loti
Substrates and Products (Substrate)
Substrates
Commentary Substrates
Literature (Substrates)
Organism
Products
Commentary (Products)
Literature (Products)
Organism (Products)
Reversibility
D-Allose
-
714530
Mesorhizobium loti
?
-
-
-
?
D-Allose
-
714530
Mesorhizobium loti Tono
?
-
-
-
?
D-allose
-
714530
Mesorhizobium loti
D-talose
-
-
-
?
D-Arabinose
slight activity
714530
Mesorhizobium loti
?
-
-
-
?
D-Galactose
slight activity
714530
Mesorhizobium loti
?
-
-
-
?
D-glucose
slight activity
714530
Mesorhizobium loti
?
-
-
-
?
D-Lyxose
slight activity
714530
Mesorhizobium loti
?
-
-
-
?
D-Mannose
-
714530
Mesorhizobium loti
?
-
-
-
?
D-Mannose
slight activity
714530
Mesorhizobium loti
?
-
-
-
?
D-Ribose
-
714530
Mesorhizobium loti
D-Ribulose
-
-
-
?
D-Ribose
-
714530
Mesorhizobium loti Tono
D-Ribulose
-
-
-
?
D-Ribose
-
714530
Mesorhizobium loti
?
-
-
-
?
D-talose
slight activity
714530
Mesorhizobium loti
D-allose
-
-
-
?
D-talose
slight activity
714530
Mesorhizobium loti
?
-
-
-
?
L-Arabinose
slight activity
714530
Mesorhizobium loti
?
-
-
-
?
L-galactose
slight activity
714530
Mesorhizobium loti
?
-
-
-
?
L-Lyxose
-
714530
Mesorhizobium loti
L-Xylulose
-
-
-
r
L-Lyxose
-
714530
Mesorhizobium loti Tono
L-Xylulose
-
-
-
r
L-lyxose
-
714530
Mesorhizobium loti
?
-
-
-
r
L-Mannose
-
714530
Mesorhizobium loti
L-Fructose
-
-
-
?
L-Mannose
-
714530
Mesorhizobium loti Tono
L-Fructose
-
-
-
?
L-mannose
-
714530
Mesorhizobium loti
?
-
-
-
?
L-Rhamnose
highest activity
714530
Mesorhizobium loti
L-Rhamnulose
-
-
-
?
L-Rhamnose
highest activity
714530
Mesorhizobium loti Tono
L-Rhamnulose
-
-
-
?
L-ribose
slight activity
714530
Mesorhizobium loti
?
-
-
-
?
L-talose
-
714530
Mesorhizobium loti
?
-
-
-
?
L-xylulose
-
714530
Mesorhizobium loti
L-lyxose
-
-
-
r
Subunits
Subunits
Commentary
Organism
?
x * 46946, calculated from amino acid sequence
Mesorhizobium loti
Temperature Optimum [C]
Temperature Optimum [C]
Temperature Optimum Maximum [C]
Commentary
Organism
60
-
-
Mesorhizobium loti
Temperature Stability [C]
Temperature Stability Minimum [C]
Temperature Stability Maximum [C]
Commentary
Organism
50
-
after incubation at 50C in glycine-NaOH buffer (pH 9.0) for 1 h, approximately 70% of enzyme activity is retained; after incubation at 50C in glycineNaOH buffer (pH 9.0) for 1 h, approximately 70% of enzyme activity is retained
Mesorhizobium loti
Turnover Number [1/s]
Turnover Number Minimum [1/s]
Turnover Number Maximum [1/s]
Substrate
Commentary
Organism
Structure
0.1
-
D-ribose
in 50 mM glycine-NaOH, pH 9.0, 1 mM MnCl2, at 60C
Mesorhizobium loti
1.3
-
D-Allose
in 50 mM glycine-NaOH, pH 9.0, 1 mM MnCl2, at 60C
Mesorhizobium loti
7
-
L-talose
in 50 mM glycine-NaOH, pH 9.0, 1 mM MnCl2, at 60C
Mesorhizobium loti
10
-
L-Mannose
in 50 mM glycine-NaOH, pH 9.0, 1 mM MnCl2, at 60C
Mesorhizobium loti
50.5
-
L-rhamnose
in 50 mM glycine-NaOH, pH 9.0, 1 mM MnCl2, at 60C
Mesorhizobium loti
73.8
-
L-Lyxose
in 50 mM glycine-NaOH, pH 9.0, 1 mM MnCl2, at 60C
Mesorhizobium loti
pH Optimum
pH Optimum Minimum
pH Optimum Maximum
Commentary
Organism
9
-
-
Mesorhizobium loti
pH Stability
pH Stability
pH Stability Maximum
Commentary
Organism
5
11
the enzyme remains stable after 24 h over a broad pH range from pH 5.0-11.0
Mesorhizobium loti
Cloned(Commentary) (protein specific)
Commentary
Organism
expressed in Escherichia coli JM109 cells
Mesorhizobium loti
Inhibitors (protein specific)
Inhibitors
Commentary
Organism
Structure
EDTA
enzyme activity is lost after EDTA treatment
Mesorhizobium loti
KM Value [mM] (protein specific)
KM Value [mM]
KM Value Maximum [mM]
Substrate
Commentary
Organism
Structure
2
3.4
L-Mannose
in 50 mM glycine-NaOH, pH 9.0, 1 mM MnCl2, at 60C
Mesorhizobium loti
5
-
L-rhamnose
in 50 mM glycine-NaOH, pH 9.0, 1 mM MnCl2, at 60C
Mesorhizobium loti
5.25
-
L-talose
in 50 mM glycine-NaOH, pH 9.0, 1 mM MnCl2, at 60C
Mesorhizobium loti
6.18
-
D-ribose
in 50 mM glycine-NaOH, pH 9.0, 1 mM MnCl2, at 60C
Mesorhizobium loti
7.11
-
D-Allose
in 50 mM glycine-NaOH, pH 9.0, 1 mM MnCl2, at 60C
Mesorhizobium loti
23.5
-
L-Lyxose
in 50 mM glycine-NaOH, pH 9.0, 1 mM MnCl2, at 60C
Mesorhizobium loti
Metals/Ions (protein specific)
Metals/Ions
Commentary
Organism
Structure
Mn2+
highest activity in the presence of Mn2+
Mesorhizobium loti
Molecular Weight [Da] (protein specific)
Molecular Weight [Da]
Molecular Weight Maximum [Da]
Commentary
Organism
46946
-
x * 46946, calculated from amino acid sequence
Mesorhizobium loti
Purification (Commentary) (protein specific)
Commentary
Organism
Ni-NTA column chromatography
Mesorhizobium loti
Substrates and Products (Substrate) (protein specific)
Substrates
Commentary Substrates
Literature (Substrates)
Organism
Products
Commentary (Products)
Literature (Products)
Organism (Products)
Reversibility
D-Allose
-
714530
Mesorhizobium loti
?
-
-
-
?
D-Allose
-
714530
Mesorhizobium loti Tono
?
-
-
-
?
D-allose
-
714530
Mesorhizobium loti
D-talose
-
-
-
?
D-Arabinose
slight activity
714530
Mesorhizobium loti
?
-
-
-
?
D-Galactose
slight activity
714530
Mesorhizobium loti
?
-
-
-
?
D-glucose
slight activity
714530
Mesorhizobium loti
?
-
-
-
?
D-Lyxose
slight activity
714530
Mesorhizobium loti
?
-
-
-
?
D-Mannose
-
714530
Mesorhizobium loti
?
-
-
-
?
D-Mannose
slight activity
714530
Mesorhizobium loti
?
-
-
-
?
D-Ribose
-
714530
Mesorhizobium loti
D-Ribulose
-
-
-
?
D-Ribose
-
714530
Mesorhizobium loti Tono
D-Ribulose
-
-
-
?
D-Ribose
-
714530
Mesorhizobium loti
?
-
-
-
?
D-talose
slight activity
714530
Mesorhizobium loti
D-allose
-
-
-
?
D-talose
slight activity
714530
Mesorhizobium loti
?
-
-
-
?
L-Arabinose
slight activity
714530
Mesorhizobium loti
?
-
-
-
?
L-galactose
slight activity
714530
Mesorhizobium loti
?
-
-
-
?
L-Lyxose
-
714530
Mesorhizobium loti
L-Xylulose
-
-
-
r
L-Lyxose
-
714530
Mesorhizobium loti Tono
L-Xylulose
-
-
-
r
L-lyxose
-
714530
Mesorhizobium loti
?
-
-
-
r
L-Mannose
-
714530
Mesorhizobium loti
L-Fructose
-
-
-
?
L-Mannose
-
714530
Mesorhizobium loti Tono
L-Fructose
-
-
-
?
L-mannose
-
714530
Mesorhizobium loti
?
-
-
-
?
L-Rhamnose
highest activity
714530
Mesorhizobium loti
L-Rhamnulose
-
-
-
?
L-Rhamnose
highest activity
714530
Mesorhizobium loti Tono
L-Rhamnulose
-
-
-
?
L-ribose
slight activity
714530
Mesorhizobium loti
?
-
-
-
?
L-talose
-
714530
Mesorhizobium loti
?
-
-
-
?
L-xylulose
-
714530
Mesorhizobium loti
L-lyxose
-
-
-
r
Subunits (protein specific)
Subunits
Commentary
Organism
?
x * 46946, calculated from amino acid sequence
Mesorhizobium loti
Temperature Optimum [C] (protein specific)
Temperature Optimum [C]
Temperature Optimum Maximum [C]
Commentary
Organism
60
-
-
Mesorhizobium loti
Temperature Stability [C] (protein specific)
Temperature Stability Minimum [C]
Temperature Stability Maximum [C]
Commentary
Organism
50
-
after incubation at 50C in glycine-NaOH buffer (pH 9.0) for 1 h, approximately 70% of enzyme activity is retained; after incubation at 50C in glycineNaOH buffer (pH 9.0) for 1 h, approximately 70% of enzyme activity is retained
Mesorhizobium loti
Turnover Number [1/s] (protein specific)
Turnover Number Minimum [1/s]
Turnover Number Maximum [1/s]
Substrate
Commentary
Organism
Structure
0.1
-
D-ribose
in 50 mM glycine-NaOH, pH 9.0, 1 mM MnCl2, at 60C
Mesorhizobium loti
1.3
-
D-Allose
in 50 mM glycine-NaOH, pH 9.0, 1 mM MnCl2, at 60C
Mesorhizobium loti
7
-
L-talose
in 50 mM glycine-NaOH, pH 9.0, 1 mM MnCl2, at 60C
Mesorhizobium loti
10
-
L-Mannose
in 50 mM glycine-NaOH, pH 9.0, 1 mM MnCl2, at 60C
Mesorhizobium loti
50.5
-
L-rhamnose
in 50 mM glycine-NaOH, pH 9.0, 1 mM MnCl2, at 60C
Mesorhizobium loti
73.8
-
L-Lyxose
in 50 mM glycine-NaOH, pH 9.0, 1 mM MnCl2, at 60C
Mesorhizobium loti
pH Optimum (protein specific)
pH Optimum Minimum
pH Optimum Maximum
Commentary
Organism
9
-
-
Mesorhizobium loti
pH Stability (protein specific)
pH Stability
pH Stability Maximum
Commentary
Organism
5
11
the enzyme remains stable after 24 h over a broad pH range from pH 5.0-11.0
Mesorhizobium loti
KCat/KM [mM/s]
kcat/KM Value [1/mMs-1]
kcat/KM Value Maximum [1/mMs-1]
Substrate
Commentary
Organism
Structure
0.2
-
D-Allose
in 50 mM glycine-NaOH, pH 9.0, 1 mM MnCl2, at 60C
Mesorhizobium loti
0.4
-
L-Mannose
in 50 mM glycine-NaOH, pH 9.0, 1 mM MnCl2, at 60C
Mesorhizobium loti
0.8
-
D-ribose
in 50 mM glycine-NaOH, pH 9.0, 1 mM MnCl2, at 60C
Mesorhizobium loti
1.3
-
L-talose
in 50 mM glycine-NaOH, pH 9.0, 1 mM MnCl2, at 60C
Mesorhizobium loti
3.1
-
L-Lyxose
in 50 mM glycine-NaOH, pH 9.0, 1 mM MnCl2, at 60C
Mesorhizobium loti
10.1
-
L-rhamnose
in 50 mM glycine-NaOH, pH 9.0, 1 mM MnCl2, at 60C
Mesorhizobium loti
KCat/KM [mM/s] (protein specific)
KCat/KM Value [1/mMs-1]
KCat/KM Value Maximum [1/mMs-1]
Substrate
Commentary
Organism
Structure
0.2
-
D-Allose
in 50 mM glycine-NaOH, pH 9.0, 1 mM MnCl2, at 60C
Mesorhizobium loti
0.4
-
L-Mannose
in 50 mM glycine-NaOH, pH 9.0, 1 mM MnCl2, at 60C
Mesorhizobium loti
0.8
-
D-ribose
in 50 mM glycine-NaOH, pH 9.0, 1 mM MnCl2, at 60C
Mesorhizobium loti
1.3
-
L-talose
in 50 mM glycine-NaOH, pH 9.0, 1 mM MnCl2, at 60C
Mesorhizobium loti
3.1
-
L-Lyxose
in 50 mM glycine-NaOH, pH 9.0, 1 mM MnCl2, at 60C
Mesorhizobium loti
10.1
-
L-rhamnose
in 50 mM glycine-NaOH, pH 9.0, 1 mM MnCl2, at 60C
Mesorhizobium loti
Other publictions for EC 5.3.1.14
No.
1st author
Pub Med
title
organims
journal
volume
pages
year
Activating Compound
Application
Cloned(Commentary)
Crystallization (Commentary)
Engineering
General Stability
Inhibitors
KM Value [mM]
Localization
Metals/Ions
Molecular Weight [Da]
Natural Substrates/ Products (Substrates)
Organic Solvent Stability
Organism
Oxidation Stability
Posttranslational Modification
Purification (Commentary)
Reaction
Renatured (Commentary)
Source Tissue
Specific Activity [micromol/min/mg]
Storage Stability
Substrates and Products (Substrate)
Subunits
Temperature Optimum [C]
Temperature Range [C]
Temperature Stability [C]
Turnover Number [1/s]
pH Optimum
pH Range
pH Stability
Cofactor
Ki Value [mM]
pI Value
IC50 Value
Activating Compound (protein specific)
Application (protein specific)
Cloned(Commentary) (protein specific)
Cofactor (protein specific)
Crystallization (Commentary) (protein specific)
Engineering (protein specific)
General Stability (protein specific)
IC50 Value (protein specific)
Inhibitors (protein specific)
Ki Value [mM] (protein specific)
KM Value [mM] (protein specific)
Localization (protein specific)
Metals/Ions (protein specific)
Molecular Weight [Da] (protein specific)
Natural Substrates/ Products (Substrates) (protein specific)
Organic Solvent Stability (protein specific)
Oxidation Stability (protein specific)
Posttranslational Modification (protein specific)
Purification (Commentary) (protein specific)
Renatured (Commentary) (protein specific)
Source Tissue (protein specific)
Specific Activity [micromol/min/mg] (protein specific)
Storage Stability (protein specific)
Substrates and Products (Substrate) (protein specific)
Subunits (protein specific)
Temperature Optimum [C] (protein specific)
Temperature Range [C] (protein specific)
Temperature Stability [C] (protein specific)
Turnover Number [1/s] (protein specific)
pH Optimum (protein specific)
pH Range (protein specific)
pH Stability (protein specific)
pI Value (protein specific)
Expression
General Information
General Information (protein specific)
Expression (protein specific)
KCat/KM [mM/s]
KCat/KM [mM/s] (protein specific)
747394
Seo
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13
1
1
-
3
-
1
-
-
-
-
-
-
-
1
-
-
-
-
-
-
-
-
-
-
1
1
-
-
-
-
-
-
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13
1
1
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3
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1
-
-
-
-
-
-
-
-
-
748497
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6
-
-
-
-
-
-
-
-
1
-
-
-
3
-
-
-
-
-
-
4
-
8
1
1
-
3
-
1
-
-
-
-
-
-
6
-
-
-
-
-
-
-
-
-
-
-
1
-
-
-
-
-
-
-
-
4
-
8
1
1
-
3
-
1
-
-
-
-
-
-
-
-
-
749202
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Characterization of a novel t ...
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53
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-
-
1
-
-
-
-
4
-
4
-
-
-
2
-
-
-
-
-
-
-
-
8
1
1
1
-
-
1
2
-
-
-
-
-
-
-
1
-
-
-
-
-
-
-
4
-
4
-
-
-
-
-
-
-
-
-
-
8
1
1
1
-
-
1
2
-
-
-
-
-
-
4
4
747820
Bai
-
Characteristics and kinetic p ...
Bacillus subtilis, Bacillus subtilis 168
Food Sci. Technol. Res.
21
13-22
2015
-
-
1
-
-
-
8
4
-
3
-
-
-
2
-
-
-
-
-
-
-
-
10
1
1
-
1
4
-
-
-
-
-
-
-
-
-
1
-
-
-
-
-
8
-
4
-
3
-
-
-
-
-
-
-
-
-
-
10
1
1
-
1
4
-
-
-
-
-
-
-
-
4
4
747355
Park
-
Characterization of a recombi ...
Bacillus subtilis, Bacillus subtilis ATCC 23857
Biotechnol. Bioprocess Eng.
19
18-25
2014
-
1
1
-
-
-
-
3
-
1
1
-
-
2
-
-
-
-
-
-
4
-
10
1
1
-
1
3
1
-
-
-
-
-
-
-
1
1
-
-
-
-
-
-
-
3
-
1
1
-
-
-
-
-
-
-
4
-
10
1
1
-
1
3
1
-
-
-
-
-
-
-
3
3
727230
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Characterization of a recombin ...
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Biotechnol. Lett.
35
259-264
2013
-
-
1
-
-
-
-
7
-
1
3
2
-
3
-
-
1
-
-
-
-
-
12
1
1
-
1
7
1
-
1
-
-
-
-
-
-
1
-
-
-
-
-
-
-
7
-
1
3
2
-
-
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2
-
-
-
1
-
-
1
-
-
-
1
1
3
-
-
-
1
-
1
1
-
-
-
-
-
2
-
-
-
-
-
-
-
4
-
-
-
2
-
-
-
-
-
1
-
-
1
1
3
-
-
-
1
-
1
1
-
-
-
-
-
-
-
-