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Literature summary for 5.1.3.13 extracted from

  • Kaminski, L.; Eichler, J.
    Haloferax volcanii N-glycosylation delineating the pathway of dTDP-rhamnose biosynthesis (2014), PLoS ONE, 9, e97441 .
    View publication on PubMedView publication on EuropePMC

Cloned(Commentary)

Cloned (Comment) Organism
gene agl13, organized in a rmlABCD type cluster, sequence comparisons, functional recombinant expression of cellulose-bound CBD-Agl13 in Haloferax volcanii strain WR536 Haloferax volcanii

Natural Substrates/ Products (Substrates)

Natural Substrates Organism Comment (Nat. Sub.) Natural Products Comment (Nat. Pro.) Rev. Reac.
dTDP-4-dehydro-6-deoxy-alpha-D-glucose Haloferax volcanii
-
dTDP-4-dehydro-beta-L-rhamnose
-
r
dTDP-4-dehydro-6-deoxy-alpha-D-glucose Haloferax volcanii WR536 / H53 / ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2
-
dTDP-4-dehydro-beta-L-rhamnose
-
r

Organism

Organism UniProt Comment Textmining
Haloferax volcanii D4GU69
-
-
Haloferax volcanii WR536 / H53 / ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2 D4GU69
-
-

Purification (Commentary)

Purification (Comment) Organism
recombinant cellulose-bound CBD-Agl13 from Haloferax volcanii strain WR536 by affinity chromatography Haloferax volcanii

Substrates and Products (Substrate)

Substrates Comment Substrates Organism Products Comment (Products) Rev. Reac.
dTDP-4-dehydro-6-deoxy-alpha-D-glucose
-
Haloferax volcanii dTDP-4-dehydro-beta-L-rhamnose
-
r
dTDP-4-dehydro-6-deoxy-alpha-D-glucose
-
Haloferax volcanii WR536 / H53 / ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2 dTDP-4-dehydro-beta-L-rhamnose
-
r

Synonyms

Synonyms Comment Organism
Agl13
-
Haloferax volcanii
dTDP-4-dehydro-6-deoxy-glucose-3,5-epimerase
-
Haloferax volcanii
RmlC
-
Haloferax volcanii

Temperature Optimum [°C]

Temperature Optimum [°C] Temperature Optimum Maximum [°C] Comment Organism
42
-
recombinant cellulose-bound CBD-Agl13 Haloferax volcanii

pH Optimum

pH Optimum Minimum pH Optimum Maximum Comment Organism
7.2
-
recombinant cellulose-bound CBD-Agl13 Haloferax volcanii

General Information

General Information Comment Organism
evolution Archaea synthesize nucleotide-activated rhamnose by a pathway similar to that employed by Bacteria and distinct from that used by Eukarya and viruses Haloferax volcanii
metabolism Archaea synthesize nucleotide-activated rhamnose by a pathway similar to that employed by Bacteria and distinct from that used by Eukarya and viruses. The pathwayto synthesize nucleotide-activated rhamnose involves Agl11 as a glucose-1-phosphate thymidylyltransferase, Agl12 as a dTDP-glucose-4,6-dehydratase, Agl13 as a dTDP-4-dehydro-6-deoxy-glucose-3,5-epimerase, and Agl14 as a dTDP-4-dehydrorhamnose reductase Haloferax volcanii
physiological function enzyme Agl13 is a dTDP-4-dehydro-6-deoxy-glucose-3,5-epimerase Haloferax volcanii