Literature summary for 4.4.1.3 extracted from

Curson, A.R.; Rogers, R.; Todd, J.D.; Brearley, C.A.; Johnston, A.W.
Molecular genetic analysis of a dimethylsulfoniopropionate lyase that liberates the climate-changing gas dimethylsulfide in several marine alpha -proteobacteria and Rhodobacter sphaeroides (2008), Environ. Microbiol., 10, 1099.

Search for more literature for 4.4.1.3

Cloned(Commentary)

Cloned (Comment)	Organism
gene dddL, expression analysis	Fulvimarina pelagi HTCC2506
gene dddL, expression analysis	Yoonia vestfoldensis
gene dddL, expression analysis	Pseudooceanicola batsensis HTCC2597
gene dddL, expression analysis	Stappia sp.
gene dddl, expression analysis, expression in Escherichia coli	Cereibacter sphaeroides
gene dddL, genetic organization and expression analysis, expression in Escherichia coli	Sulfitobacter sp. EE-36

Natural Substrates/ Products (Substrates)

Natural Substrates	Organism	Comment (Nat. Sub.)	Natural Products	Comment (Nat. Pro.)	Rev.	Reac.
S,S-dimethyl-beta-propiothetin	Sulfitobacter sp. EE-36	the alpha-proteobacterium produces the gas dimethylsulfide from dimethylsulfoniopropionate, an abundant antistress molecule made by many marine phytoplankton	dimethyl sulfide + acrylate	-	?
S,S-dimethyl-beta-propiothetin	Fulvimarina pelagi HTCC2506	the alpha-proteobacterium produces the gas dimethylsulfide from dimethylsulfoniopropionate, an abundant antistress molecule made by many marine phytoplankton	dimethyl sulfide + acrylate	-	?
S,S-dimethyl-beta-propiothetin	Yoonia vestfoldensis	the alpha-proteobacterium produces the gas dimethylsulfide from dimethylsulfoniopropionate, an abundant antistress molecule made by many marine phytoplankton	dimethyl sulfide + acrylate	-	?
S,S-dimethyl-beta-propiothetin	Pseudooceanicola batsensis HTCC2597	the alpha-proteobacterium produces the gas dimethylsulfide from dimethylsulfoniopropionate, an abundant antistress molecule made by many marine phytoplankton	dimethyl sulfide + acrylate	-	?
S,S-dimethyl-beta-propiothetin	Stappia sp.	the alpha-proteobacterium produces the gas dimethylsulfide from dimethylsulfoniopropionate, an abundant antistress molecule made by many marine phytoplankton	dimethyl sulfide + acrylate	-	?
S,S-dimethyl-beta-propiothetin	Cereibacter sphaeroides	the alpha-proteobacterium Sulfitobacter EE-36 produces the gas dimethylsulfide from dimethylsulfoniopropionate, an abundant antistress molecule made by many marine phytoplankton	dimethyl sulfide + acrylate	-	?
S,S-dimethyl-beta-propiothetin	Stappia sp. KB902	the alpha-proteobacterium produces the gas dimethylsulfide from dimethylsulfoniopropionate, an abundant antistress molecule made by many marine phytoplankton	dimethyl sulfide + acrylate	-	?

Organism

Organism	UniProt	Comment	Textmining
Cereibacter sphaeroides	-	strain 2.4.1, no activity in strain ATCC 17025, gene dddL	-
Fulvimarina pelagi HTCC2506	-	gene dddL	-
Pseudooceanicola batsensis HTCC2597	-	gene dddL	-
Stappia sp.	-	gene dddL	-
Stappia sp. KB902	-	gene dddL	-
Sulfitobacter sp. EE-36	-	gene dddL	-
Yoonia vestfoldensis	-	gene dddL	-

Substrates and Products (Substrate)

Substrates	Comment Substrates	Organism	Products	Comment (Products)	Rev.	Reac.
S,S-dimethyl-beta-propiothetin	-	Cereibacter sphaeroides	dimethyl sulfide + acrylate	-	?
S,S-dimethyl-beta-propiothetin	-	Sulfitobacter sp. EE-36	dimethyl sulfide + acrylate	-	?
S,S-dimethyl-beta-propiothetin	-	Fulvimarina pelagi HTCC2506	dimethyl sulfide + acrylate	-	?
S,S-dimethyl-beta-propiothetin	-	Yoonia vestfoldensis	dimethyl sulfide + acrylate	-	?
S,S-dimethyl-beta-propiothetin	-	Pseudooceanicola batsensis HTCC2597	dimethyl sulfide + acrylate	-	?
S,S-dimethyl-beta-propiothetin	-	Stappia sp.	dimethyl sulfide + acrylate	-	?
S,S-dimethyl-beta-propiothetin	the alpha-proteobacterium produces the gas dimethylsulfide from dimethylsulfoniopropionate, an abundant antistress molecule made by many marine phytoplankton	Sulfitobacter sp. EE-36	dimethyl sulfide + acrylate	-	?
S,S-dimethyl-beta-propiothetin	the alpha-proteobacterium produces the gas dimethylsulfide from dimethylsulfoniopropionate, an abundant antistress molecule made by many marine phytoplankton	Fulvimarina pelagi HTCC2506	dimethyl sulfide + acrylate	-	?
S,S-dimethyl-beta-propiothetin	the alpha-proteobacterium produces the gas dimethylsulfide from dimethylsulfoniopropionate, an abundant antistress molecule made by many marine phytoplankton	Yoonia vestfoldensis	dimethyl sulfide + acrylate	-	?
S,S-dimethyl-beta-propiothetin	the alpha-proteobacterium produces the gas dimethylsulfide from dimethylsulfoniopropionate, an abundant antistress molecule made by many marine phytoplankton	Pseudooceanicola batsensis HTCC2597	dimethyl sulfide + acrylate	-	?
S,S-dimethyl-beta-propiothetin	the alpha-proteobacterium produces the gas dimethylsulfide from dimethylsulfoniopropionate, an abundant antistress molecule made by many marine phytoplankton	Stappia sp.	dimethyl sulfide + acrylate	-	?
S,S-dimethyl-beta-propiothetin	the alpha-proteobacterium Sulfitobacter EE-36 produces the gas dimethylsulfide from dimethylsulfoniopropionate, an abundant antistress molecule made by many marine phytoplankton	Cereibacter sphaeroides	dimethyl sulfide + acrylate	-	?
S,S-dimethyl-beta-propiothetin	-	Stappia sp. KB902	dimethyl sulfide + acrylate	-	?
S,S-dimethyl-beta-propiothetin	the alpha-proteobacterium produces the gas dimethylsulfide from dimethylsulfoniopropionate, an abundant antistress molecule made by many marine phytoplankton	Stappia sp. KB902	dimethyl sulfide + acrylate	-	?

Synonyms

Synonyms	Comment	Organism
DddL lyase	-	Cereibacter sphaeroides
DddL lyase	-	Sulfitobacter sp. EE-36
DddL lyase	-	Fulvimarina pelagi HTCC2506
DddL lyase	-	Yoonia vestfoldensis
DddL lyase	-	Pseudooceanicola batsensis HTCC2597
DddL lyase	-	Stappia sp.
dimethylsulfoniopropionate lyase	-	Cereibacter sphaeroides
dimethylsulfoniopropionate lyase	-	Sulfitobacter sp. EE-36
dimethylsulfoniopropionate lyase	-	Fulvimarina pelagi HTCC2506
dimethylsulfoniopropionate lyase	-	Yoonia vestfoldensis
dimethylsulfoniopropionate lyase	-	Pseudooceanicola batsensis HTCC2597
dimethylsulfoniopropionate lyase	-	Stappia sp.
DMSP lyase	-	Cereibacter sphaeroides
DMSP lyase	-	Sulfitobacter sp. EE-36
DMSP lyase	-	Fulvimarina pelagi HTCC2506
DMSP lyase	-	Yoonia vestfoldensis
DMSP lyase	-	Pseudooceanicola batsensis HTCC2597
DMSP lyase	-	Stappia sp.

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Release 2023.1 (January 2023)