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Literature summary for 4.2.2.3 extracted from

  • Ochiai, A.; Hashimoto, W.; Murata, K.
    A biosystem for alginate metabolism in Agrobacterium tumefaciens strain C58: molecular identification of Atu3025 as an exotype family PL-15 alginate lyase (2006), Res. Microbiol., 157, 642-649.
    View publication on PubMed

Cloned(Commentary)

Cloned (Comment) Organism
overexpressed in Escherichia coli Agrobacterium tumefaciens

Inhibitors

Inhibitors Comment Organism Structure
D-galacturonic acid
-
Agrobacterium tumefaciens
D-glucuronic acid
-
Agrobacterium tumefaciens
Hg2+ 1 mM, 96% inhibition Agrobacterium tumefaciens
Zn2+ 1 mM, complete inhibition Agrobacterium tumefaciens

Molecular Weight [Da]

Molecular Weight [Da] Molecular Weight Maximum [Da] Comment Organism
87871
-
4 * 87871, calculated from sequence Agrobacterium tumefaciens
88000
-
4 * 88000, SDS-PAGE Agrobacterium tumefaciens
350000
-
gel filtration Agrobacterium tumefaciens

Natural Substrates/ Products (Substrates)

Natural Substrates Organism Comment (Nat. Sub.) Natural Products Comment (Nat. Pro.) Rev. Reac.
alginate Agrobacterium tumefaciens Atu3025 is an exotype alginate lyase potentially involved in the assimilation of low-molecular-weight alginate in strain C58 ?
-
?
alginate Agrobacterium tumefaciens C58 / ATCC 33970 Atu3025 is an exotype alginate lyase potentially involved in the assimilation of low-molecular-weight alginate in strain C58 ?
-
?

Organism

Organism UniProt Comment Textmining
Agrobacterium tumefaciens
-
-
-
Agrobacterium tumefaciens C58 / ATCC 33970
-
-
-

Purification (Commentary)

Purification (Comment) Organism
-
Agrobacterium tumefaciens

Substrates and Products (Substrate)

Substrates Comment Substrates Organism Products Comment (Products) Rev. Reac.
alginate Atu3025 is an exotype alginate lyase potentially involved in the assimilation of low-molecular-weight alginate in strain C58 Agrobacterium tumefaciens ?
-
?
alginate Atu3025 is an exotype family PL-15 alginate lyase Agrobacterium tumefaciens ?
-
?
alginate Atu3025 is an exotype alginate lyase potentially involved in the assimilation of low-molecular-weight alginate in strain C58 Agrobacterium tumefaciens C58 / ATCC 33970 ?
-
?
alginate Atu3025 is an exotype family PL-15 alginate lyase Agrobacterium tumefaciens C58 / ATCC 33970 ?
-
?

Subunits

Subunits Comment Organism
tetramer 4 * 88000, SDS-PAGE Agrobacterium tumefaciens
tetramer 4 * 87871, calculated from sequence Agrobacterium tumefaciens

Synonyms

Synonyms Comment Organism
Atu3025
-
Agrobacterium tumefaciens

Temperature Optimum [°C]

Temperature Optimum [°C] Temperature Optimum Maximum [°C] Comment Organism
30
-
-
Agrobacterium tumefaciens

pH Optimum

pH Optimum Minimum pH Optimum Maximum Comment Organism
7.3
-
-
Agrobacterium tumefaciens