Literature summary for 4.1.1.39 extracted from

Matsumura, H.; Mizohata, E.; Ishida, H.; Kogami, A.; Ueno, T.; Makino, A.; Inoue, T.; Yokota, A.; Mae, T.; Kai, Y.
Crystal structure of rice Rubisco and implications for activation induced by positive effectors NADPH and 6-phosphogluconate (2012), J. Mol. Biol., 422, 75-86.

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Crystallization (Commentary)

Crystallization (Comment)	Organism
in complex with NADPH, 6-phosphogluconate, or 2-carboxy-D-arabinitol 1,5-bisphosphate, hanging drop vapor diffusion method, using 75 mM HEPES-KOH (pH 7.75 at 20°C), 9% (w/v) polyethylene glycol 4000, and 25% (v/v) glycerol	Oryza sativa

Localization

Localization	Comment	Organism	GeneOntology No.	Textmining
chloroplast	-	Oryza sativa	9507	-

Metals/Ions

Metals/Ions	Comment	Organism	Structure
Mg2+	required	Oryza sativa

Molecular Weight [Da]

Molecular Weight [Da]	Molecular Weight Maximum [Da]	Comment	Organism
15000	-	8 * 55000 + 8 * 15000, calculated from amino acid sequence	Oryza sativa
55000	-	8 * 55000 + 8 * 15000, calculated from amino acid sequence	Oryza sativa

Natural Substrates/ Products (Substrates)

Natural Substrates	Organism	Comment (Nat. Sub.)	Natural Products	Comment (Nat. Pro.)	Rev.	Reac.
D-ribulose 1,5-bisphosphate + CO2 + H2O	Oryza sativa	-	3-phospho-D-glycerate + H+	-	?

Organism

Organism	UniProt	Comment	Textmining
Oryza sativa	P0C512 and Q0INY7	large and small subunit; cultivar Notohikari	-

Purification (Commentary)

Purification (Comment)	Organism
Superdex 200 gel filtration	Oryza sativa

Substrates and Products (Substrate)

Substrates	Comment Substrates	Organism	Products	Comment (Products)	Rev.	Reac.
D-ribulose 1,5-bisphosphate + CO2 + H2O	-	Oryza sativa	3-phospho-D-glycerate + H+	-	?

Subunits

Subunits	Comment	Organism
heterohexadecamer	8 * 55000 + 8 * 15000, calculated from amino acid sequence	Oryza sativa

Synonyms

Synonyms	Comment	Organism
D-ribulose 1,5-bisphosphate carboxylase/oxygenase	-	Oryza sativa
Rubisco	-	Oryza sativa

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Release 2023.1 (January 2023)