BRENDA - Enzyme Database
show all sequences of 4.1.1.2

Production, purification and partial characterization for an oxalate decarboxylase (OxDcase) from the probiote Lactobacillus plantarum KSK-II

Kotb, E.; Curr. Sci. 114, 835-844 (2018)
No PubMed abstract available

Data extracted from this reference:

Activating Compound
Activating Compound
Commentary
Organism
Structure
arabic gum
about 120% activity at 0.1% (w/v)
Lactobacillus plantarum
arabinogalactan
about 150% activity at 0.1% (w/v)
Lactobacillus plantarum
ferrocyanide
about 112% activity at 5 mM
Lactobacillus plantarum
fructooligosaccharide
about 160% activity at 0.1% (w/v)
Lactobacillus plantarum
guar gum
about 140% activity at 0.1% (w/v)
Lactobacillus plantarum
inulin
about 110% activity at 0.1% (w/v)
Lactobacillus plantarum
L-ascorbate
about 110% activity at 5 mM
Lactobacillus plantarum
lactitol
about 130% activity at 0.1% (w/v)
Lactobacillus plantarum
maltodextrin
about 145% activity at 0.1% (w/v)
Lactobacillus plantarum
o-phenylenediamine
about 138% activity at 5 mM
Lactobacillus plantarum
Triton X-100
about 115% activity at 5 mM
Lactobacillus plantarum
Inhibitors
Inhibitors
Commentary
Organism
Structure
2-oxoglutaric acid
about 82% residual activity at 25 mM
Lactobacillus plantarum
Citric acid
about 77% residual activity at 25 mM
Lactobacillus plantarum
Fumaric acid
about 73% residual activity at 25 mM
Lactobacillus plantarum
hydroxylamine
about 50% residual activity at 5 mM
Lactobacillus plantarum
Maleic acid
about 69% residual activity at 25 mM
Lactobacillus plantarum
malonic acid
about 68% residual activity at 25 mM
Lactobacillus plantarum
NaBr
about 71% residual activity at 50 mM
Lactobacillus plantarum
NaCl
about 98% residual activity at 50 mM
Lactobacillus plantarum
NaF
about 68% residual activity at 50 mM
Lactobacillus plantarum
NaI
about 82% residual activity at 50 mM
Lactobacillus plantarum
oxaloacetic acid
about 68% residual activity at 25 mM
Lactobacillus plantarum
Phthalic acid
about 97% residual activity at 25 mM
Lactobacillus plantarum
Sodium dithionite
about 75% residual activity at 5 mM
Lactobacillus plantarum
sodium sulfite
about 60% residual activity at 5 mM
Lactobacillus plantarum
succinic acid
about 77% residual activity at 25 mM
Lactobacillus plantarum
KM Value [mM]
KM Value [mM]
KM Value Maximum [mM]
Substrate
Commentary
Organism
Structure
12.7
-
oxalate
at pH 5.0 and 35°C
Lactobacillus plantarum
Natural Substrates/ Products (Substrates)
Natural Substrates
Organism
Commentary (Nat. Sub.)
Natural Products
Commentary (Nat. Pro.)
Organism (Nat. Pro.)
Reversibility
oxalate + H+
Lactobacillus plantarum
-
formate + CO2
-
-
?
oxalate + H+
Lactobacillus plantarum KSK-II
-
formate + CO2
-
-
?
Organism
Organism
Primary Accession No. (UniProt)
Commentary
Textmining
Lactobacillus plantarum
-
-
-
Lactobacillus plantarum KSK-II
-
-
-
Purification (Commentary)
Commentary
Organism
DEAE-Sepharose column chromatography and Sephadex G-100 gel filtration
Lactobacillus plantarum
Substrates and Products (Substrate)
Substrates
Commentary Substrates
Literature (Substrates)
Organism
Products
Commentary (Products)
Literature (Products)
Organism (Products)
Reversibility
oxalate + H+
-
747628
Lactobacillus plantarum
formate + CO2
-
-
-
?
oxalate + H+
-
747628
Lactobacillus plantarum KSK-II
formate + CO2
-
-
-
?
Subunits
Subunits
Commentary
Organism
?
x * 63000, SDS-PAGE
Lactobacillus plantarum
Temperature Optimum [°C]
Temperature Optimum [°C]
Temperature Optimum Maximum [°C]
Commentary
Organism
35
-
-
Lactobacillus plantarum
Temperature Range [°C]
Temperature Minimum [°C]
Temperature Maximum [°C]
Commentary
Organism
20
50
more than 70% activity between 20 and 50°C
Lactobacillus plantarum
Temperature Stability [°C]
Temperature Stability Minimum [°C]
Temperature Stability Maximum [°C]
Commentary
Organism
47
-
the enzyme is stable at pH 4.0-7.0 for 1 h
Lactobacillus plantarum
70
-
the enzyme is maximally stable till 70?C for 1 h
Lactobacillus plantarum
Turnover Number [1/s]
Turnover Number Minimum [1/s]
Turnover Number Maximum [1/s]
Substrate
Commentary
Organism
Structure
64
-
oxalate
at pH 5.0 and 35°C
Lactobacillus plantarum
pH Optimum
pH Optimum Minimum
pH Optimum Maximum
Commentary
Organism
5
-
-
Lactobacillus plantarum
pH Range
pH Minimum
pH Maximum
Commentary
Organism
4
6
more than 70% activity between pH 4.0 and 6.0
Lactobacillus plantarum
pI Value
Organism
Commentary
pI Value Maximum
pI Value
Lactobacillus plantarum
isoelectric focusing
-
3.5
Activating Compound (protein specific)
Activating Compound
Commentary
Organism
Structure
arabic gum
about 120% activity at 0.1% (w/v)
Lactobacillus plantarum
arabinogalactan
about 150% activity at 0.1% (w/v)
Lactobacillus plantarum
ferrocyanide
about 112% activity at 5 mM
Lactobacillus plantarum
fructooligosaccharide
about 160% activity at 0.1% (w/v)
Lactobacillus plantarum
guar gum
about 140% activity at 0.1% (w/v)
Lactobacillus plantarum
inulin
about 110% activity at 0.1% (w/v)
Lactobacillus plantarum
L-ascorbate
about 110% activity at 5 mM
Lactobacillus plantarum
lactitol
about 130% activity at 0.1% (w/v)
Lactobacillus plantarum
maltodextrin
about 145% activity at 0.1% (w/v)
Lactobacillus plantarum
o-phenylenediamine
about 138% activity at 5 mM
Lactobacillus plantarum
Triton X-100
about 115% activity at 5 mM
Lactobacillus plantarum
Inhibitors (protein specific)
Inhibitors
Commentary
Organism
Structure
2-oxoglutaric acid
about 82% residual activity at 25 mM
Lactobacillus plantarum
Citric acid
about 77% residual activity at 25 mM
Lactobacillus plantarum
Fumaric acid
about 73% residual activity at 25 mM
Lactobacillus plantarum
hydroxylamine
about 50% residual activity at 5 mM
Lactobacillus plantarum
Maleic acid
about 69% residual activity at 25 mM
Lactobacillus plantarum
malonic acid
about 68% residual activity at 25 mM
Lactobacillus plantarum
NaBr
about 71% residual activity at 50 mM
Lactobacillus plantarum
NaCl
about 98% residual activity at 50 mM
Lactobacillus plantarum
NaF
about 68% residual activity at 50 mM
Lactobacillus plantarum
NaI
about 82% residual activity at 50 mM
Lactobacillus plantarum
oxaloacetic acid
about 68% residual activity at 25 mM
Lactobacillus plantarum
Phthalic acid
about 97% residual activity at 25 mM
Lactobacillus plantarum
Sodium dithionite
about 75% residual activity at 5 mM
Lactobacillus plantarum
sodium sulfite
about 60% residual activity at 5 mM
Lactobacillus plantarum
succinic acid
about 77% residual activity at 25 mM
Lactobacillus plantarum
KM Value [mM] (protein specific)
KM Value [mM]
KM Value Maximum [mM]
Substrate
Commentary
Organism
Structure
12.7
-
oxalate
at pH 5.0 and 35°C
Lactobacillus plantarum
Natural Substrates/ Products (Substrates) (protein specific)
Natural Substrates
Organism
Commentary (Nat. Sub.)
Natural Products
Commentary (Nat. Pro.)
Organism (Nat. Pro.)
Reversibility
oxalate + H+
Lactobacillus plantarum
-
formate + CO2
-
-
?
oxalate + H+
Lactobacillus plantarum KSK-II
-
formate + CO2
-
-
?
Purification (Commentary) (protein specific)
Commentary
Organism
DEAE-Sepharose column chromatography and Sephadex G-100 gel filtration
Lactobacillus plantarum
Substrates and Products (Substrate) (protein specific)
Substrates
Commentary Substrates
Literature (Substrates)
Organism
Products
Commentary (Products)
Literature (Products)
Organism (Products)
Reversibility
oxalate + H+
-
747628
Lactobacillus plantarum
formate + CO2
-
-
-
?
oxalate + H+
-
747628
Lactobacillus plantarum KSK-II
formate + CO2
-
-
-
?
Subunits (protein specific)
Subunits
Commentary
Organism
?
x * 63000, SDS-PAGE
Lactobacillus plantarum
Temperature Optimum [°C] (protein specific)
Temperature Optimum [°C]
Temperature Optimum Maximum [°C]
Commentary
Organism
35
-
-
Lactobacillus plantarum
Temperature Range [°C] (protein specific)
Temperature Minimum [°C]
Temperature Maximum [°C]
Commentary
Organism
20
50
more than 70% activity between 20 and 50°C
Lactobacillus plantarum
Temperature Stability [°C] (protein specific)
Temperature Stability Minimum [°C]
Temperature Stability Maximum [°C]
Commentary
Organism
47
-
the enzyme is stable at pH 4.0-7.0 for 1 h
Lactobacillus plantarum
70
-
the enzyme is maximally stable till 70?C for 1 h
Lactobacillus plantarum
Turnover Number [1/s] (protein specific)
Turnover Number Minimum [1/s]
Turnover Number Maximum [1/s]
Substrate
Commentary
Organism
Structure
64
-
oxalate
at pH 5.0 and 35°C
Lactobacillus plantarum
pH Optimum (protein specific)
pH Optimum Minimum
pH Optimum Maximum
Commentary
Organism
5
-
-
Lactobacillus plantarum
pH Range (protein specific)
pH Minimum
pH Maximum
Commentary
Organism
4
6
more than 70% activity between pH 4.0 and 6.0
Lactobacillus plantarum
pI Value (protein specific)
Organism
Commentary
pI Value Maximum
pI Value
Lactobacillus plantarum
isoelectric focusing
-
3.5
KCat/KM [mM/s]
kcat/KM Value [1/mMs-1]
kcat/KM Value Maximum [1/mMs-1]
Substrate
Commentary
Organism
Structure
5.05
-
oxalate
at pH 5.0 and 35°C
Lactobacillus plantarum
KCat/KM [mM/s] (protein specific)
KCat/KM Value [1/mMs-1]
KCat/KM Value Maximum [1/mMs-1]
Substrate
Commentary
Organism
Structure
5.05
-
oxalate
at pH 5.0 and 35°C
Lactobacillus plantarum
Other publictions for EC 4.1.1.2
No.
1st author
Pub Med
title
organims
journal
volume
pages
year
Activating Compound
Application
Cloned(Commentary)
Crystallization (Commentary)
Engineering
General Stability
Inhibitors
KM Value [mM]
Localization
Metals/Ions
Molecular Weight [Da]
Natural Substrates/ Products (Substrates)
Organic Solvent Stability
Organism
Oxidation Stability
Posttranslational Modification
Purification (Commentary)
Reaction
Renatured (Commentary)
Source Tissue
Specific Activity [micromol/min/mg]
Storage Stability
Substrates and Products (Substrate)
Subunits
Temperature Optimum [°C]
Temperature Range [°C]
Temperature Stability [°C]
Turnover Number [1/s]
pH Optimum
pH Range
pH Stability
Cofactor
Ki Value [mM]
pI Value
IC50 Value
Activating Compound (protein specific)
Application (protein specific)
Cloned(Commentary) (protein specific)
Cofactor (protein specific)
Crystallization (Commentary) (protein specific)
Engineering (protein specific)
General Stability (protein specific)
IC50 Value (protein specific)
Inhibitors (protein specific)
Ki Value [mM] (protein specific)
KM Value [mM] (protein specific)
Localization (protein specific)
Metals/Ions (protein specific)
Molecular Weight [Da] (protein specific)
Natural Substrates/ Products (Substrates) (protein specific)
Organic Solvent Stability (protein specific)
Oxidation Stability (protein specific)
Posttranslational Modification (protein specific)
Purification (Commentary) (protein specific)
Renatured (Commentary) (protein specific)
Source Tissue (protein specific)
Specific Activity [micromol/min/mg] (protein specific)
Storage Stability (protein specific)
Substrates and Products (Substrate) (protein specific)
Subunits (protein specific)
Temperature Optimum [°C] (protein specific)
Temperature Range [°C] (protein specific)
Temperature Stability [°C] (protein specific)
Turnover Number [1/s] (protein specific)
pH Optimum (protein specific)
pH Range (protein specific)
pH Stability (protein specific)
pI Value (protein specific)
Expression
General Information
General Information (protein specific)
Expression (protein specific)
KCat/KM [mM/s]
KCat/KM [mM/s] (protein specific)
747145
Zhu
Second-shell hydrogen bond im ...
Bacillus subtilis 168, Bacillus subtilis
Biochemistry
57
3425-3432
2018
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747628
Kotb
-
Production, purification and ...
Lactobacillus plantarum, Lactobacillus plantarum KSK-II
Curr. Sci.
114
835-844
2018
11
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748313
Albert
Expression of heterologous ox ...
Bacillus subtilis
J. Enzyme Inhib. Med. Chem.
32
426-433
2017
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748822
Koni
-
Effect of pH and temperature ...
Bacillus subtilis, Bacillus subtilis FNCC 0059
Pak. J. Biol. Sci.
20
436-441
2017
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747113
Twahir
Redox cycling, pH dependence, ...
Bacillus subtilis 168, Bacillus subtilis
Biochemistry
55
6505-6516
2016
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748902
Kumar
Improving nutritional quality ...
Flammulina velutipes
Plant Biotechnol. J.
14
1394-1405
2016
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5
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747828
Twahir
Observation of superoxide pro ...
Bacillus subtilis 168, Bacillus subtilis
Free Radic. Biol. Med.
80
59-66
2015
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1
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748708
Liang
Fungal oxalate decarboxylase ...
Sclerotinia sclerotiorum 1980, Sclerotinia sclerotiorum
Mol. Plant Pathol.
16
825-836
2015
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727612
Winestrand
-
Evaluation of oxalate decarbox ...
Aspergillus niger, uncultured fungus
Ind. Biotechnol.
10
126-129
2014
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2
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727697
Campomanes
Assigning the EPR fine structu ...
Bacillus subtilis
J. Am. Chem. Soc.
136
2313-2323
2014
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747434
Lee
Expression of the gene encodi ...
Bacillus subtilis 128, Bacillus subtilis
BMC Res. Notes
7
598
2014
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747620
Sasikumar
Genetically engineered Lactob ...
Lactobacillus plantarum
Curr. Microbiol.
69
708-715
2014
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748244
Sasikumar
Recombinant Lactobacillus pla ...
Lactobacillus plantarum
J. Biomed. Sci.
21
86
2014
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727124
Sasikumar
Secretion of biologically acti ...
Bacillus subtilis
BioMed Res. Int.
2013
280432
2013
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727707
Anbazhagan
In vitro degradation of oxalat ...
Bacillus subtilis
J. Appl. Microbiol.
115
880-887
2013
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1
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Saylor
A structural element that faci ...
Bacillus subtilis 168, Bacillus subtilis
Biochemistry
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714726
Moral
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1
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715086
Imaram
EPR spin trapping of an oxalat ...
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1
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4
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1
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1
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715299
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1
1
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716726
Lin
Immobilization of oxalate deca ...
Bacillus subtilis
Prep. Biochem. Biotechnol.
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1
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2
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1
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1
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1
1
1
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1
1
1
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728346
da Silva
Expression of an oxalate decar ...
Flammulina velutipes
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1
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1
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695712
Cassland
Evaluation of oxalate decarbox ...
Aspergillus niger
Appl. Biochem. Biotechnol.
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2010
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1
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701766
Zhu
Induction of an oxalate decarb ...
Trametes versicolor, Trametes versicolor PRL572
Appl. Biochem. Biotechnol.
160
655-664
2010
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2
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1
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1
-
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704104
Cowley
14-day repeat-dose oral toxici ...
Bacillus subtilis
Int. J. Toxicol.
29
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2010
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713879
Maekelae
Oxalate decarboxylase: biotech ...
Agaricus bisporus, Aspergillus niger, Aspergillus sp., Bacillus subtilis, Dichomitus squalens, Flammulina sp., Flammulina sp. IJF 140502, Flammulina velutipes, Pandorea sp., Pandorea sp. OXJ-11a, Phanerochaete chrysosporium, Trametes versicolor
Appl. Microbiol. Biotechnol.
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1
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10
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10
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8
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6
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10
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10
6
12
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1
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12
10
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8
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690331
Grujic
Hyperoxaluria is reduced and n ...
Mus musculus
Am. J. Nephrol.
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86-93
2009
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1
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1
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1
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691955
Kolandaswamy
Heterologous expression of oxa ...
Bacillus subtilis
Curr. Microbiol.
58
117-121
2009
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1
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1
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1
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692903
MacLellan
The YvrI alternative sigma fac ...
Bacillus subtilis 168 / CU1065, Bacillus subtilis
J. Bacteriol.
191
931-939
2009
1
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4
-
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1
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1
-
-
702319
Moomaw
Metal dependence of oxalate de ...
Bacillus subtilis
Biochemistry
48
6116-6125
2009
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1
-
7
-
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7
-
1
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2
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1
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1
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7
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1
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7
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7
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1
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1
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1
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7
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8
8
705343
Tabares
pH-Dependent structures of the ...
Bacillus subtilis
J. Phys. Chem. B
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9016-9025
2009
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1
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1
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1
1
-
-
-
-
-
-
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-
-
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1
1
687082
Scarpellini
Modeling the resting state of ...
Bacillus subtilis, Thermotoga maritima
Inorg. Chem.
47
3584-3593
2008
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-
-
-
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2
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2
-
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-
-
-
-
-
-
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692203
Walz
-
Reactive oxygen intermediates ...
Trametes versicolor
Eur. J. Plant Pathol.
120
317-330
2008
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1
-
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-
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1
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1
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1
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1
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1
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1
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-
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-
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693597
Shen
Oxalate decarboxylase from Agr ...
Agrobacterium tumefaciens, Agrobacterium tumefaciens C58 / ATCC 33970
J. Microbiol. Biotechnol.
18
1245-1251
2008
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2
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1
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2
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2
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1
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1
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2
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-
-
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694237
MacLellan
A previously unidentified sigm ...
Bacillus subtilis 168 / CU1065, Bacillus subtilis
Mol. Microbiol.
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954-967
2008
1
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2
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-
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677825
Svedruzic
Investigating the roles of put ...
Bacillus subtilis
Arch. Biochem. Biophys.
464
36-47
2007
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1
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8
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1
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1
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1
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1
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7
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2
1
1
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4
1
1
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1
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8
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1
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1
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1
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1
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7
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2
1
1
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4
1
1
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678075
Just
The identity of the active sit ...
Bacillus subtilis 168, Bacillus subtilis
Biochem. J.
407
397-406
2007
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1
1
16
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15
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1
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1
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3
1
1
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1
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1
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1
16
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15
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2
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1
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1
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1
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3
1
1
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1
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-
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678229
Burrell
Oxalate decarboxylase and oxal ...
Bacillus subtilis
Biochemistry
46
12327-12336
2007
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1
1
8
-
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5
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1
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1
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2
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1
1
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1
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1
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1
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1
1
1
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5
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1
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1
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1
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1
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1
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681596
Angerhofer
Multifrequency EPR studies on ...
Bacillus subtilis
J. Phys. Chem. B
111
5043-5046
2007
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1
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1
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1
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1
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1
1
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1
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678138
Muthusamy
Real-time monitoring of the ox ...
Bacillus subtilis
Biochemistry
45
10667-10673
2006
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1
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2
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1
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1
1
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1
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1
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1
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1
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1
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3
-
2
-
-
-
2
-
-
-
-
-
-
-
-
-
682396
Dias
-
Expression of an oxalate decar ...
Flammulina sp., Flammulina sp. IJF 140502
Plant Pathol.
55
187-193
2006
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1
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1
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1
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1
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1
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1
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651732
Costa
Assembly of an oxalate decarbo ...
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186
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1
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1
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1
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1
1
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2
1
1
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652532
Just
A closed conformation of Bacil ...
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1
1
8
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6
1
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4
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1
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1
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669296
Chang
EPR spectroscopic characteriza ...
Bacillus subtilis
J. Biol. Chem.
279
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2004
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651590
Reinhardt
Heavy atom isotope effects on ...
Bacillus subtilis, Bacillus subtilis 168
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2003
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650168
Anand
Structure of oxalate decarboxy ...
Bacillus subtilis, Bacillus subtilis 168 / CU1065
Biochemistry
41
7659-7669
2002
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651021
Makela
-
Production of organic acids an ...
Dichomitus squalens, Dichomitus squalens PO114, no activity in Ceriporiopsis subvermispora, no activity in Ceriporiopsis subvermispora CZ-3, no activity in Haploporus odorus strain T154, no activity in Nematoloma frowardii, no activity in Nematoloma frowardii b19, no activity in Phanerochaete chrysosporium, no activity in Phanerochaete chrysosporium F1767, no activity in Phlebiopsis gigantea, no activity in Phlebiopsis gigantea T55, no activity in Radulodon erikssonii, no activity in Radulodon erikssonii T84, no activity in Trichaptum fusco-violaceum, no activity in Trichaptum fusco-violaceum T21, Phanerochaete sanguinea, Phanerochaete sanguinea T51, Trametes ochracea, Trametes ochracea T7, Trametes versicolor
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542-549
2002
4
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652196
Tanner
Oxalate decarboxylase requires ...
Bacillus subtilis, Bacillus subtilis 168
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2001
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651662
Tanner
Bacillus subtilis YvrK is an a ...
Bacillus subtilis, Bacillus subtilis 168
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2
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652089
Kesarwani
Oxalate decarboxylase from Col ...
Flammulina velutipes
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275
7230-7238
2000
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653286
Kathiara
-
Detection and partial characte ...
Agaricus bisporus
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104
345-350
2000
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Labrou
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Biomimetic dye-ligands for oxa ...
Aspergillus phoenicis
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1995
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Dutton
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Purification and characterizat ...
Trametes versicolor
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4107
Mehta
Oxalate decarboxylase from Col ...
Flammulina velutipes
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4102
Magro
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Enzymatic oxalate decarboxylat ...
Sclerotinia sclerotiorum
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49-52
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4103
Murthy
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Oxalate decarboxylase from gui ...
Cavia porcellus
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683-684
1981
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4104
Emiliani
Enzymatic oxalate dcarboxylase ...
Aspergillus niger
Biochim. Biophys. Acta
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414-421
1968
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