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Literature summary for 3.8.1.5 extracted from

  • Sato, Y.; Monincova, M.; Chaloupkova, R.; Prokop, Z.; Ohtsubo, Y.; Minamisawa, K.; Tsuda, M.; Damborsky, J.; Nagata, Y.
    Two rhizobial strains, Mesorhizobium loti MAFF303099 and Bradyrhizobium japonicum USDA110, encode haloalkane dehalogenases with novel structures and substrate specificities (2005), Appl. Environ. Microbiol., 71, 4372-4379.
    View publication on PubMedView publication on EuropePMC

Cloned(Commentary)

Cloned (Comment) Organism
-
Bradyrhizobium japonicum

Protein Variants

Protein Variants Comment Organism
D103A no activity with substrates 1,3-dibromopropane or 1-chlorobutane Bradyrhizobium japonicum
E127A no activity with substrates 1,3-dibromopropane or 1-chlorobutane, purification of enzyme not possible because of very small amount of soluble enzyme protein Bradyrhizobium japonicum
H280A no activity with substrates 1,3-dibromopropane or 1-chlorobutane Bradyrhizobium japonicum

Inhibitors

Inhibitors Comment Organism Structure
1,3-dibromopropane substrate inhibition Bradyrhizobium japonicum
3-chloro-2-methylpropene substrate inhibition Bradyrhizobium japonicum

KM Value [mM]

KM Value [mM] KM Value Maximum [mM] Substrate Comment Organism Structure
0.04
-
chlorocyclohexane
-
Bradyrhizobium japonicum
0.05
-
1-Chlorohexane
-
Bradyrhizobium japonicum
0.11
-
bromocyclohexane
-
Bradyrhizobium japonicum
0.22
-
1,3-dibromopropane
-
Bradyrhizobium japonicum
0.28
-
1,2,3-trichloropropane
-
Bradyrhizobium japonicum
0.47
-
3-chloro-2-methylpropene
-
Bradyrhizobium japonicum
1.8
-
1,2-dibromopropane
-
Bradyrhizobium japonicum
4
-
1-Chlorobutane
-
Bradyrhizobium japonicum

Organism

Organism UniProt Comment Textmining
Bradyrhizobium japonicum
-
strain USDA110
-
Bradyrhizobium japonicum USDA 110
-
strain USDA110
-
Mesorhizobium loti
-
-
-
Mesorhizobium loti MAFF303099
-
-
-

Purification (Commentary)

Purification (Comment) Organism
recombinant His-tagged protein Bradyrhizobium japonicum

Substrates and Products (Substrate)

Substrates Comment Substrates Organism Products Comment (Products) Rev. Reac.
1,2,3-trichloropropane + H2O
-
Bradyrhizobium japonicum ?
-
?
1,2-dibromoethane + H2O 1100% of the activity with 1-chlorobutane Bradyrhizobium japonicum 2-bromoethanol + bromide
-
?
1,2-dibromoethane + H2O 1100% of the activity with 1-chlorobutane Bradyrhizobium japonicum USDA 110 2-bromoethanol + bromide
-
?
1,2-dibromopropane + H2O
-
Bradyrhizobium japonicum ? + bromide
-
?
1,3-dibromopropane + H2O 420% of the activity with 1-chlorobutane Bradyrhizobium japonicum 3-bromopropanol + bromide
-
?
1,3-dibromopropane + H2O 700% of the activity with 1-chlorobutane Mesorhizobium loti 3-bromopropanol + bromide
-
?
1-bromobutane + H2O 180% of the activity with 1-chlorobutane Bradyrhizobium japonicum n-butanol + bromide
-
?
1-bromobutane + H2O 630% of the activity with 1-chlorobutane Mesorhizobium loti n-butanol + bromide
-
?
1-bromobutane + H2O 180% of the activity with 1-chlorobutane Bradyrhizobium japonicum USDA 110 n-butanol + bromide
-
?
1-bromobutane + H2O 630% of the activity with 1-chlorobutane Mesorhizobium loti MAFF303099 n-butanol + bromide
-
?
1-chlorobutane + H2O
-
Bradyrhizobium japonicum n-butanol + chloride
-
?
1-chlorobutane + H2O
-
Mesorhizobium loti n-butanol + chloride
-
?
1-chlorobutane + H2O
-
Bradyrhizobium japonicum USDA 110 n-butanol + chloride
-
?
1-chlorobutane + H2O
-
Mesorhizobium loti MAFF303099 n-butanol + chloride
-
?
1-chlorodecane + H2O 110% of the activity with 1-chlorobutane Mesorhizobium loti n-decanol + chloride
-
?
1-chlorodecane + H2O 52% of the activity with 1-chlorobutane Bradyrhizobium japonicum n-decanol + chloride
-
?
1-chlorohexane + H2O 110% of the activity with 1-chlorobutane Mesorhizobium loti n-hexanol + chloride
-
?
1-chlorohexane + H2O 210% of the activity with 1-chlorobutane Bradyrhizobium japonicum n-hexanol + chloride
-
?
1-chlorohexane + H2O 210% of the activity with 1-chlorobutane Bradyrhizobium japonicum USDA 110 n-hexanol + chloride
-
?
1-chlorohexane + H2O 110% of the activity with 1-chlorobutane Mesorhizobium loti MAFF303099 n-hexanol + chloride
-
?
1-chloropentane + H2O 120% of the activity with 1-chlorobutane Mesorhizobium loti n-pentanol + chloride
-
?
1-chloropentane + H2O 140% of the activity with 1-chlorobutane Bradyrhizobium japonicum n-pentanol + chloride
-
?
3-chloro-2-methylpropene + H2O 270% of the activity with 1-chlorobutane Mesorhizobium loti 2-methylpropene-3-ol + chloride
-
?
3-chloro-2-methylpropene + H2O 320% of the activity with 1-chlorobutane Bradyrhizobium japonicum 2-methylpropene-3-ol + chloride
-
?
3-chloro-2-methylpropene + H2O 320% of the activity with 1-chlorobutane Bradyrhizobium japonicum USDA 110 2-methylpropene-3-ol + chloride
-
?
3-chloro-2-methylpropene + H2O 270% of the activity with 1-chlorobutane Mesorhizobium loti MAFF303099 2-methylpropene-3-ol + chloride
-
?
bromocyclohexane + H2O 420% of the activity with 1-chlorobutane Mesorhizobium loti cyclohexanol + bromide
-
?
bromocyclohexane + H2O 84% of the activity with 1-chlorobutane Bradyrhizobium japonicum cyclohexanol + bromide
-
?
bromocyclohexane + H2O 420% of the activity with 1-chlorobutane Mesorhizobium loti MAFF303099 cyclohexanol + bromide
-
?
chlorocyclohexane + H2O 30% of the activity with 1-chlorobutane Bradyrhizobium japonicum cyclohexanol + chloride
-
?
chlorocyclohexane + H2O 620% of the activity with 1-chlorobutane Mesorhizobium loti cyclohexanol + chloride
-
?

Synonyms

Synonyms Comment Organism
dmlA
-
Bradyrhizobium japonicum
dmlA
-
Mesorhizobium loti

Turnover Number [1/s]

Turnover Number Minimum [1/s] Turnover Number Maximum [1/s] Substrate Comment Organism Structure
0.24
-
1,2,3-trichloropropane
-
Bradyrhizobium japonicum
0.25
-
chlorocyclohexane
-
Bradyrhizobium japonicum
0.59
-
bromocyclohexane
-
Bradyrhizobium japonicum
0.96
-
1,2-dibromopropane
-
Bradyrhizobium japonicum
1.4
-
1-Chlorobutane
-
Bradyrhizobium japonicum
1.4
-
1-Chlorohexane
-
Bradyrhizobium japonicum
3.5
-
3-chloro-2-methylpropene
-
Bradyrhizobium japonicum
3.6
-
1,3-dibromopropane
-
Bradyrhizobium japonicum

Ki Value [mM]

Ki Value [mM] Ki Value maximum [mM] Inhibitor Comment Organism Structure
5.12
-
3-chloro-2-methylpropene
-
Bradyrhizobium japonicum
6.98
-
1,3-dibromopropane
-
Bradyrhizobium japonicum