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Literature summary for 3.5.1.98 extracted from

  • Hu, Y.; Qin, F.; Huang, L.; Sun, Q.; Li, C.; Zhao, Y.; Zhou, D.X.
    Rice histone deacetylase genes display specific expression patterns and developmental functions (2009), Biochem. Biophys. Res. Commun., 388, 266-271.
    View publication on PubMed
Search for more literature for 3.5.1.98

Inhibitors

Inhibitors Comment Organism Structure
trichostatin-A specific HDAC inhibitor Oryza sativa Indica Group
trichostatin-A specific HDAC inhibitor; specific HDAC inhibitor; specific HDAC inhibitor Oryza sativa Japonica Group

Natural Substrates/ Products (Substrates)

Natural Substrates Organism Comment (Nat. Sub.) Natural Products Comment (Nat. Pro.) Rev. Reac.
N-acetyl-lysine-histone H4 + H2O Oryza sativa Japonica Group
-
 acetate + histone H4
-
 ?
N-acetyl-lysine-histone H4 + H2O Oryza sativa Indica Group
-
 acetate + histone H4
-
 ?

Organism

Organism UniProt Comment Textmining
Oryza sativa Indica Group
-
 variety Minghui63
-
Oryza sativa Japonica Group Q2QWU2 variety Zhonghua11
-
Oryza sativa Japonica Group Q5VP94 variety Zhonghua11
-
Oryza sativa Japonica Group Q6YV04 variety Zhonghua11
-

Source Tissue

Source Tissue Comment Organism Textmining
callus
-
 Oryza sativa Japonica Group
-
callus
-
 Oryza sativa Indica Group
-
endosperm
-
 Oryza sativa Japonica Group
-
endosperm
-
 Oryza sativa Indica Group
-
leaf
-
 Oryza sativa Japonica Group
-
leaf
-
 Oryza sativa Indica Group
-
seed
-
 Oryza sativa Japonica Group
-
seed
-
 Oryza sativa Indica Group
-
seedling
-
 Oryza sativa Japonica Group
-
seedling
-
 Oryza sativa Indica Group
-
shoot
-
 Oryza sativa Japonica Group
-
shoot
-
 Oryza sativa Indica Group
-
stamen
-
 Oryza sativa Japonica Group
-
stamen
-
 Oryza sativa Indica Group
-

Substrates and Products (Substrate)

Substrates Comment Substrates Organism Products Comment (Products) Rev. Reac.
N-acetyl-lysine-histone H4 + H2O
-
 Oryza sativa Japonica Group acetate + histone H4
-
 ?
N-acetyl-lysine-histone H4 + H2O
-
 Oryza sativa Indica Group acetate + histone H4
-
 ?

Synonyms

Synonyms Comment Organism
HDAC
-
 Oryza sativa Japonica Group
HDAC
-
 Oryza sativa Indica Group
HDAC1
-
 Oryza sativa Japonica Group
HDAC10
-
 Oryza sativa Japonica Group
HDAC2
-
 Oryza sativa Japonica Group
HDAC3
-
 Oryza sativa Japonica Group
HDAC6
-
 Oryza sativa Japonica Group

General Information

General Information Comment Organism
malfunction down-regulation of HDAC gene HDA710 induces a semi-dwarf phenotype, down-regulation of HDAC gene HDA704 affects plant height and flag leaf development Oryza sativa Japonica Group
malfunction down-regulation of HDAC gene HDA710 induces a semi-dwarf phenotype, down-regulation of HDAC gene HDA704 affects plant height and flag leaf development Oryza sativa Indica Group
physiological function the HDAC gene HDA703 is involved in histone H4 acetylation in rice, HDAC gene HDA703 has a function during plant reproductive development and seed morphology, HDA702/HDAC1 and HDA710 play a similar but important role in root and vegetative growth Oryza sativa Japonica Group
physiological function the HDAC gene HDA703 is involved in histone H4 acetylation in rice, HDAC gene HDA703 has a function during plant reproductive development and seed morphology, HDA702/HDAC1 and HDA710 play a similar but important role in root and vegetative growth Oryza sativa Indica Group