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Literature summary for 3.5.1.88 extracted from

  • Park, J.K.; Moon, J.H.; Kim, J.H.; Kim, E.E.
    Crystallization and preliminary X-ray crystallographic analysis of peptide deformylase (PDF) from Bacillus cereus in ligand-free and actinonin-bound forms (2005), Acta Crystallogr. Sect. F, 61, 150-152.
    View publication on PubMedView publication on EuropePMC

Application

Application Comment Organism
medicine peptide deformylase has been considered as a potential target in antimicrobial chemotherapy Bacillus cereus

Cloned(Commentary)

Cloned (Comment) Organism
into pET28a vector for overexpression of the recombinant protein in Escherichia BL21(DE3) cells Bacillus cereus

Crystallization (Commentary)

Crystallization (Comment) Organism
inhibitor free structure, 1.7 A resolution - peptide deformylase-actinonin complex, 2.0 A resolution Bacillus cereus

Inhibitors

Inhibitors Comment Organism Structure
actinonin
-
Bacillus cereus

Metals/Ions

Metals/Ions Comment Organism Structure
Fe2+
-
Bacillus cereus
Ni2+
-
Bacillus cereus

Molecular Weight [Da]

Molecular Weight [Da] Molecular Weight Maximum [Da] Comment Organism
17480
-
-
Bacillus cereus

Natural Substrates/ Products (Substrates)

Natural Substrates Organism Comment (Nat. Sub.) Natural Products Comment (Nat. Pro.) Rev. Reac.
formyl-L-methionyl peptide + H2O Bacillus cereus
-
formate + methionyl peptide
-
?

Organism

Organism UniProt Comment Textmining
Bacillus cereus
-
-
-

Purification (Commentary)

Purification (Comment) Organism
using a Ni2+-chelated Hi-trap chelating column and gelfiltation on a Superdex-75 prep-grade column Bacillus cereus

Substrates and Products (Substrate)

Substrates Comment Substrates Organism Products Comment (Products) Rev. Reac.
formyl-L-methionyl peptide + H2O
-
Bacillus cereus formate + methionyl peptide
-
?

Synonyms

Synonyms Comment Organism
BcPDF
-
Bacillus cereus
PDF
-
Bacillus cereus
peptide deformylase
-
Bacillus cereus