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show all sequences of 3.5.1.53

Transcriptome analysis of agmatine and putrescine catabolism in Pseudomonas aeruginosa PAO1

Chou, H.T.; Kwon, D.H.; Hegazy, M.; Lu, C.D.; J. Bacteriol. 190, 1966-1975 (2008)

Data extracted from this reference:

Activating Compound
Activating Compound
Commentary
Organism
Structure
additional information
induction of aphA and aphB by exogenous agmatine and acetylputrescine
Pseudomonas aeruginosa
Cloned(Commentary)
Commentary
Organism
overexpression of gene aphA in Escherichia coli
Pseudomonas aeruginosa
Metals/Ions
Metals/Ions
Commentary
Organism
Structure
Co2+
activates
Pseudomonas aeruginosa
Mg2+
activates
Pseudomonas aeruginosa
Natural Substrates/ Products (Substrates)
Natural Substrates
Organism
Commentary (Nat. Sub.)
Natural Products
Commentary (Nat. Pro.)
Organism (Nat. Pro.)
Reversibility
additional information
Pseudomonas aeruginosa
the alanine-pyruvate cycle is indispensable for polyamine utilization, detailed transcriptome profile analysis of Pseudomonas aeruginosa in response to agmatine and putrescine, overview
?
-
-
-
N-carbamoylputrescine + H2O
Pseudomonas aeruginosa
the two acetylpolyamine amidohydrolases, AphA and AphB, are involved in the conversion of agmatine into putrescine, catabolic pathways of agmatine and putrescine, overview
putrescine + CO2 + NH3
-
-
?
Organism
Organism
Primary Accession No. (UniProt)
Commentary
Textmining
Pseudomonas aeruginosa
-
genes aphA and aphB or PA1409 and PA0321
-
Substrates and Products (Substrate)
Substrates
Commentary Substrates
Literature (Substrates)
Organism
Products
Commentary (Products)
Literature (Products)
Organism (Products)
Reversibility
additional information
the alanine-pyruvate cycle is indispensable for polyamine utilization, detailed transcriptome profile analysis of Pseudomonas aeruginosa in response to agmatine and putrescine, overview
692846
Pseudomonas aeruginosa
?
-
-
-
-
N-acetylputrescin + H2O
-
692846
Pseudomonas aeruginosa
putrescine + acetate
-
-
-
?
N-carbamoylputrescine + H2O
-
692846
Pseudomonas aeruginosa
putrescine + CO2 + NH3
-
-
-
?
N-carbamoylputrescine + H2O
the two acetylpolyamine amidohydrolases, AphA and AphB, are involved in the conversion of agmatine into putrescine, catabolic pathways of agmatine and putrescine, overview
692846
Pseudomonas aeruginosa
putrescine + CO2 + NH3
-
-
-
?
Temperature Optimum [°C]
Temperature Optimum [°C]
Temperature Optimum Maximum [°C]
Commentary
Organism
37
-
assay at
Pseudomonas aeruginosa
pH Optimum
pH Optimum Minimum
pH Optimum Maximum
Commentary
Organism
7.8
-
assay at
Pseudomonas aeruginosa
Activating Compound (protein specific)
Activating Compound
Commentary
Organism
Structure
additional information
induction of aphA and aphB by exogenous agmatine and acetylputrescine
Pseudomonas aeruginosa
Cloned(Commentary) (protein specific)
Commentary
Organism
overexpression of gene aphA in Escherichia coli
Pseudomonas aeruginosa
Metals/Ions (protein specific)
Metals/Ions
Commentary
Organism
Structure
Co2+
activates
Pseudomonas aeruginosa
Mg2+
activates
Pseudomonas aeruginosa
Natural Substrates/ Products (Substrates) (protein specific)
Natural Substrates
Organism
Commentary (Nat. Sub.)
Natural Products
Commentary (Nat. Pro.)
Organism (Nat. Pro.)
Reversibility
additional information
Pseudomonas aeruginosa
the alanine-pyruvate cycle is indispensable for polyamine utilization, detailed transcriptome profile analysis of Pseudomonas aeruginosa in response to agmatine and putrescine, overview
?
-
-
-
N-carbamoylputrescine + H2O
Pseudomonas aeruginosa
the two acetylpolyamine amidohydrolases, AphA and AphB, are involved in the conversion of agmatine into putrescine, catabolic pathways of agmatine and putrescine, overview
putrescine + CO2 + NH3
-
-
?
Substrates and Products (Substrate) (protein specific)
Substrates
Commentary Substrates
Literature (Substrates)
Organism
Products
Commentary (Products)
Literature (Products)
Organism (Products)
Reversibility
additional information
the alanine-pyruvate cycle is indispensable for polyamine utilization, detailed transcriptome profile analysis of Pseudomonas aeruginosa in response to agmatine and putrescine, overview
692846
Pseudomonas aeruginosa
?
-
-
-
-
N-acetylputrescin + H2O
-
692846
Pseudomonas aeruginosa
putrescine + acetate
-
-
-
?
N-carbamoylputrescine + H2O
-
692846
Pseudomonas aeruginosa
putrescine + CO2 + NH3
-
-
-
?
N-carbamoylputrescine + H2O
the two acetylpolyamine amidohydrolases, AphA and AphB, are involved in the conversion of agmatine into putrescine, catabolic pathways of agmatine and putrescine, overview
692846
Pseudomonas aeruginosa
putrescine + CO2 + NH3
-
-
-
?
Temperature Optimum [°C] (protein specific)
Temperature Optimum [°C]
Temperature Optimum Maximum [°C]
Commentary
Organism
37
-
assay at
Pseudomonas aeruginosa
pH Optimum (protein specific)
pH Optimum Minimum
pH Optimum Maximum
Commentary
Organism
7.8
-
assay at
Pseudomonas aeruginosa
Other publictions for EC 3.5.1.53
No.
1st author
Pub Med
title
organims
journal
volume
pages
year
Activating Compound
Application
Cloned(Commentary)
Crystallization (Commentary)
Engineering
General Stability
Inhibitors
KM Value [mM]
Localization
Metals/Ions
Molecular Weight [Da]
Natural Substrates/ Products (Substrates)
Organic Solvent Stability
Organism
Oxidation Stability
Posttranslational Modification
Purification (Commentary)
Reaction
Renatured (Commentary)
Source Tissue
Specific Activity [micromol/min/mg]
Storage Stability
Substrates and Products (Substrate)
Subunits
Temperature Optimum [°C]
Temperature Range [°C]
Temperature Stability [°C]
Turnover Number [1/s]
pH Optimum
pH Range
pH Stability
Cofactor
Ki Value [mM]
pI Value
IC50 Value
Activating Compound (protein specific)
Application (protein specific)
Cloned(Commentary) (protein specific)
Cofactor (protein specific)
Crystallization (Commentary) (protein specific)
Engineering (protein specific)
General Stability (protein specific)
IC50 Value (protein specific)
Inhibitors (protein specific)
Ki Value [mM] (protein specific)
KM Value [mM] (protein specific)
Localization (protein specific)
Metals/Ions (protein specific)
Molecular Weight [Da] (protein specific)
Natural Substrates/ Products (Substrates) (protein specific)
Organic Solvent Stability (protein specific)
Oxidation Stability (protein specific)
Posttranslational Modification (protein specific)
Purification (Commentary) (protein specific)
Renatured (Commentary) (protein specific)
Source Tissue (protein specific)
Specific Activity [micromol/min/mg] (protein specific)
Storage Stability (protein specific)
Substrates and Products (Substrate) (protein specific)
Subunits (protein specific)
Temperature Optimum [°C] (protein specific)
Temperature Range [°C] (protein specific)
Temperature Stability [°C] (protein specific)
Turnover Number [1/s] (protein specific)
pH Optimum (protein specific)
pH Range (protein specific)
pH Stability (protein specific)
pI Value (protein specific)
Expression
General Information
General Information (protein specific)
Expression (protein specific)
KCat/KM [mM/s]
KCat/KM [mM/s] (protein specific)
713298
Fuell
Polyamine biosynthetic diversi ...
Arabidopsis thaliana
Plant Physiol. Biochem.
48
513-520
2010
-
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-
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1
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7
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1
1
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1
1
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1
1
-
-
-
719620
Landete
The role of two families of ba ...
Pseudomonas aeruginosa
Int. Microbiol.
13
169-177
2010
-
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-
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-
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8
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1
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1
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685687
Liao
Occurrence of agmatine pathway ...
Selenomonas ruminantium
Biosci. Biotechnol. Biochem.
72
445-455
2008
-
-
1
-
2
1
6
1
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3
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6
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1
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2
2
1
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1
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1
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1
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2
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4
1
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12
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2
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5
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2
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2
2
2
-
2
-
2
-
2
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692846
Chou
Transcriptome analysis of agma ...
Pseudomonas aeruginosa
J. Bacteriol.
190
1966-1975
2008
1
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1
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2
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2
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1
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4
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1
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1
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1
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2
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2
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4
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1
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1
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690188
Baumann
Chlorella viruses contain gene ...
Paramecium bursaria Chlorella virus 1, Paramecium bursaria chlorella virus MT325, Paramecium bursaria Chlorella virus NY2A
Virology
360
209-217
2007
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3
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9
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3
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3
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3
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3
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3
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652383
Piotrowski
Plant C-N hydrolases and the i ...
Arabidopsis thaliana
J. Biol. Chem.
278
1708-1712
2003
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1
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1
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1
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6
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1
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1
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1
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1
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1
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1
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1
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1
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1
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1
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1
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653166
Nakada
Identification of the putresci ...
Pseudomonas aeruginosa
Microbiology
149
707-714
2003
-
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4
1
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2
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3
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3
1
1
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1
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4
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1
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2
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3
1
1
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1
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209192
Mendum
-
Substrate utilization by grape ...
Vitis vinifera
Am. J. Enol. Vitic.
48
137-144
1997
-
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1
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1
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1
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10
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1
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1
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1
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10
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1
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209191
Shoeb
-
Diguanidinobutane (arcaine) de ...
Rhodococcus sp., Rhodococcus sp. C-x
Biosci. Biotechnol. Biochem.
58
859-863
1994
-
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2
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8
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1
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1
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3
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8
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1
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209189
Yanagisawa
-
Purification and properties of ...
Zea mays
Phytochemistry
21
2201-2203
1982
-
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3
1
1
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1
1
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1
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1
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1
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1
2
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1
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1
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3
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1
1
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1
1
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1
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1
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1
2
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1
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1
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209190
Mercenier
Catabolism of L-arginine by Ps ...
Pseudomonas aeruginosa
J. Gen. Microbiol.
116
381-389
1980
-
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1
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1
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2
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2
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1
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1
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2
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1
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