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Literature summary for 3.1.30.1 extracted from

  • Shishido, K.; Ando, T.
    Single-strand-specific nucleases (1982), Cold Spring Harbor Monogr. Ser., 14, 155-185.
No PubMed abstract available

Activating Compound

Activating Compound Comment Organism Structure
cysteine 1 mM Vigna radiata var. radiata
glutathione oxidized form, about 2fold stimulation of activity at all pH Neurospora crassa
Triton X-100
-
Bacillus subtilis
Triton X-100 stabilization of activity at pH 5.0 with 0.001% Vigna radiata var. radiata

Application

Application Comment Organism
analysis
-
Vigna radiata var. radiata
analysis
-
Aspergillus oryzae
analysis analysis of cap structures at the 5'-termini of eucaryotic mRNA Penicillium citrinum
analysis gene isolation Neurospora crassa
synthesis industrial production of 5'-phosphomononucleotides from yeast RNA Aspergillus oryzae
synthesis industrial production of 5'-phosphomononucleotides from yeast RNA Penicillium citrinum

Inhibitors

Inhibitors Comment Organism Structure
2-mercaptoethanol with 4 mM 50% of activity with denaturated DNA Neurospora crassa
2-mercaptoethanol
-
Ustilago maydis
5'-ATP
-
Neurospora crassa
5'-ATP
-
Ustilago maydis
5'-dAMP
-
Aspergillus oryzae
5'-dATP
-
Aspergillus oryzae
Ca2+
-
Homo sapiens
Ca2+
-
Mus musculus
Ca2+ about 40% inhibition of hydrolysis of RNA Neurospora crassa
CsCl optimal activity 0.5-1.8 M, 27% of maximal activity at 7 M Pseudoalteromonas espejiana
EDTA complete inactiviation at 1 mM, 70% of original activity are restored by addition of 1 mM Zn2+ Aspergillus oryzae
EDTA complete inactiviation at 1 mM, 70% of original activity are restored by addition of 1 mM Zn2+ Mus musculus
EDTA 95% inhibition at 0.1 mM, reversed by equivalent amounts of Co2+; complete inactiviation at 1 mM, 70% of original activity are restored by addition of 1 mM Zn2+ Neurospora crassa
EDTA complete inactivation by incubation with 20 mM, pH 5.0 Penicillium citrinum
EDTA complete inactiviation at 1 mM, 70% of original activity are restored by addition of 1 mM Zn2+; no activity after dialysis with 1 mM, no restoration by addition of Zn2+, Co2+, Mg2+, Mn2+, Ca2+ or cysteine Vigna radiata var. radiata
Fe2+
-
Homo sapiens
Fe2+ about 40% inhibition of hydrolysis of RNA Neurospora crassa
glutathione with 4 mM of the reduced form 50% of activity with denaturated DNA Neurospora crassa
Ionic strength
-
Neurospora crassa
Ionic strength
-
Physarum polycephalum
Ionic strength optimal 0.025-0.05 M Vigna radiata var. radiata
Mg2+
-
Mus musculus
Mg2+ about 40% inhibition of hydrolysis of RNA with 10 mM Mg2+ Neurospora crassa
NaCl
-
Aspergillus oryzae
NaCl
-
Homo sapiens
NaCl
-
Mus musculus
NaCl maximal activity 0-2 M, 40% of maximal activity at 4,4 M Pseudoalteromonas espejiana
phosphate
-
Aspergillus oryzae
phosphate
-
Mus musculus
phosphate 80% inhibition by 33 mM potassium phosphate, pH 7.5 Neurospora crassa
phosphate competitive inhibition Physarum polycephalum
phosphate
-
Ustilago maydis
sodium dodecylsulfate up to 0.6% no effect on DNA hydrolysis Aspergillus oryzae
sodium dodecylsulfate
-
Mus musculus
sodium dodecylsulfate complete inactivation with 0.01% at pH 5.0 Vigna radiata var. radiata
Urea 40% of maximal activity with single-stranded DNA with 6.6 M Pseudoalteromonas espejiana

Metals/Ions

Metals/Ions Comment Organism Structure
Ca2+ 2.5fold stimulation of hydrolysis rate of denaturated DNA by 10 mM Neurospora crassa
Co2+
-
Mus musculus
Co2+
-
Aspergillus oryzae
Co2+
-
Ustilago maydis
Co2+
-
Penicillium citrinum
Co2+ up to 3fold stimulation of DNA hydrolysis rate by 0.5 mM Neurospora crassa
Fe2+ 2.5fold stimulation of hydrolysis rate of denaturated DNA by 10 mM Neurospora crassa
Mg2+
-
Mus musculus
Mg2+
-
Homo sapiens
Mg2+
-
Mustelus canis
Mg2+ hydrolysis of single-stranded DNA in the absence of Mg2+ at 1.5% of the rate at 15 mM Mg2+ Pseudoalteromonas espejiana
Mg2+ 2.5fold stimulation of hydrolysis rate of denaturated DNA by 10 mM Neurospora crassa
Mn2+
-
Aspergillus oryzae
Mn2+
-
Mustelus canis
Zn2+
-
Vigna radiata var. radiata
Zn2+
-
Triticum aestivum
Zn2+
-
Neurospora crassa
Zn2+
-
Physarum polycephalum
Zn2+
-
Ustilago maydis
Zn2+ enzyme contains 3 zinc atoms Aspergillus oryzae
Zn2+ enzyme contains 3 zinc atoms Penicillium citrinum

Molecular Weight [Da]

Molecular Weight [Da] Molecular Weight Maximum [Da] Comment Organism
32000
-
-
Physarum polycephalum
32000
-
-
Aspergillus oryzae
39000
-
reduction with 2-mercaptoethanol prior to SDS-PAGE generates two polypeptides of 25000 and 15000, linked covalently by disulfide bond, intact and cleaved forms are equally active Vigna radiata var. radiata
42000 50000
-
Penicillium citrinum
54000
-
-
Homo sapiens
55000
-
-
Neurospora crassa
57000
-
-
Bacillus subtilis
90000
-
single inactive precursor polypeptide, generation of four nucleases by proteolysis: 75000: Mg2+ dependent exonuclease, 65000: endo-exonuclease, 55000: single-strand-specific endonuclease, 65000: Dnase A, a Ca2+ dependent endonuclease Neurospora crassa

Natural Substrates/ Products (Substrates)

Natural Substrates Organism Comment (Nat. Sub.) Natural Products Comment (Nat. Pro.) Rev. Reac.
DNA + H2O Vigna radiata var. radiata
-
5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
DNA + H2O Bacillus subtilis
-
5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
DNA + H2O Mus musculus
-
5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
DNA + H2O Escherichia coli
-
5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
DNA + H2O Homo sapiens
-
5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
DNA + H2O Triticum aestivum
-
5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
DNA + H2O Neurospora crassa
-
5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
DNA + H2O Physarum polycephalum
-
5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
DNA + H2O Aspergillus oryzae
-
5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
DNA + H2O Ustilago maydis
-
5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
DNA + H2O Penicillium citrinum
-
5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
DNA + H2O Mustelus canis
-
5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
DNA + H2O Pseudoalteromonas espejiana
-
5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
DNA + H2O Bacillus subtilis Marburg / DSM 10 / ATCC 6051
-
5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
RNA + H2O Vigna radiata var. radiata
-
5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
RNA + H2O Mus musculus
-
5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
RNA + H2O Triticum aestivum
-
5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
RNA + H2O Neurospora crassa
-
5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
RNA + H2O Physarum polycephalum
-
5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
RNA + H2O Aspergillus oryzae
-
5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
RNA + H2O Ustilago maydis
-
5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
RNA + H2O Penicillium citrinum
-
5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?

Organism

Organism UniProt Comment Textmining
Aspergillus oryzae
-
-
-
Bacillus subtilis
-
Marburg strain
-
Bacillus subtilis Marburg / DSM 10 / ATCC 6051
-
Marburg strain
-
Escherichia coli
-
-
-
Homo sapiens
-
-
-
Mus musculus
-
-
-
Mustelus canis
-
-
-
Neurospora crassa
-
-
-
Penicillium citrinum
-
-
-
Physarum polycephalum
-
-
-
Pseudoalteromonas espejiana
-
-
-
Triticum aestivum
-
-
-
Ustilago maydis
-
-
-
Vigna radiata var. radiata
-
-
-

Posttranslational Modification

Posttranslational Modification Comment Organism
glycoprotein
-
Aspergillus oryzae
glycoprotein 29% carbohydrate by weight Vigna radiata var. radiata
glycoprotein 17.4% carbohydrate consisting of mannose, galactose, glucosamine in a ratio of 6/2/1 Penicillium citrinum

Source Tissue

Source Tissue Comment Organism Textmining
ascites tumor cell
-
Mus musculus
-
plasmodium microplasmodium Physarum polycephalum
-
seedling germinating Triticum aestivum
-
sprout
-
Vigna radiata var. radiata
-

Storage Stability

Storage Stability Organism
4°C, crude and purified form, no loss of activity after several years Penicillium citrinum

Substrates and Products (Substrate)

Substrates Comment Substrates Organism Products Comment (Products) Rev. Reac.
3'-AMP + H2O
-
Vigna radiata var. radiata adenosine + phosphate
-
?
3'-AMP + H2O
-
Aspergillus oryzae adenosine + phosphate
-
?
3'-AMP + H2O
-
Penicillium citrinum adenosine + phosphate
-
?
3'-CMP + H2O
-
Vigna radiata var. radiata cytosine + phosphate
-
?
3'-CMP + H2O
-
Aspergillus oryzae cytosine + phosphate
-
?
3'-CMP + H2O
-
Penicillium citrinum cytosine + phosphate
-
?
3'-dAMP + H2O
-
Vigna radiata var. radiata 3'-deoxyadenosine + phosphate
-
?
3'-dAMP + H2O
-
Aspergillus oryzae 3'-deoxyadenosine + phosphate
-
?
3'-dCMP + H2O
-
Vigna radiata var. radiata deoxycytosine + phosphate
-
?
3'-dCMP + H2O
-
Aspergillus oryzae deoxycytosine + phosphate
-
?
3'-dGMP + H2O
-
Vigna radiata var. radiata deoxyguanosine + phosphate
-
?
3'-dGMP + H2O
-
Aspergillus oryzae deoxyguanosine + phosphate
-
?
3'-dTMP + H2O
-
Vigna radiata var. radiata deoxythymidine + phosphate
-
?
3'-dTMP + H2O
-
Aspergillus oryzae deoxythymidine + phosphate
-
?
3'-GMP + H2O
-
Vigna radiata var. radiata guanosine + phosphate
-
?
3'-GMP + H2O
-
Aspergillus oryzae guanosine + phosphate
-
?
3'-GMP + H2O
-
Penicillium citrinum guanosine + phosphate
-
?
3'-UMP + H2O
-
Vigna radiata var. radiata uridine + phosphate
-
?
3'-UMP + H2O
-
Aspergillus oryzae uridine + phosphate
-
?
3'-UMP + H2O
-
Penicillium citrinum uridine + phosphate
-
?
DNA + H2O
-
Vigna radiata var. radiata 5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
DNA + H2O
-
Bacillus subtilis 5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
DNA + H2O
-
Mus musculus 5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
DNA + H2O
-
Escherichia coli 5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
DNA + H2O
-
Homo sapiens 5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
DNA + H2O
-
Triticum aestivum 5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
DNA + H2O
-
Neurospora crassa 5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
DNA + H2O
-
Physarum polycephalum 5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
DNA + H2O
-
Aspergillus oryzae 5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
DNA + H2O
-
Ustilago maydis 5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
DNA + H2O
-
Penicillium citrinum 5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
DNA + H2O
-
Mustelus canis 5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
DNA + H2O
-
Pseudoalteromonas espejiana 5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
DNA + H2O
-
Bacillus subtilis Marburg / DSM 10 / ATCC 6051 5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
dsDNA + H2O
-
Vigna radiata var. radiata 5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
dsDNA + H2O
-
Mus musculus 5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
dsDNA + H2O
-
Homo sapiens 5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
dsDNA + H2O
-
Neurospora crassa 5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
dsDNA + H2O only 2% of activity on ssDNA Bacillus subtilis 5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
dsDNA + H2O activity on locally altered structures of native DNA like bleomycin-treated DNA, superhelical, depurinated or UV-irradiated DNA Aspergillus oryzae 5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
dsDNA + H2O activity on locally altered structures of native DNA like bleomycin-treated DNA, superhelical, depurinated or UV-irradiated DNA Pseudoalteromonas espejiana 5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
dsDNA + H2O only 2% of activity on ssDNA Bacillus subtilis Marburg / DSM 10 / ATCC 6051 5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
polyadenylic acid + H2O
-
Penicillium citrinum 5'-AMP + 5'-phosphooligonucleotides
-
?
polyadenylic acid + H2O only 5% of activity with denaturated DNA at pH 4.6, 0.05 M NaCl and 45°C, at pH 6.4 50% of activity in comparision with DNA Aspergillus oryzae 5'-AMP + 5'-phosphooligonucleotides
-
?
polycytosylic acid + H2O
-
Penicillium citrinum 5'-CMP + 5'-phosphooligonucleotides
-
?
polycytosylic acid + H2O only 5% of activity with denaturated DNA at pH 4.6, 0.05 M NaCl and 45°C, at pH 6.4 50% of activity in comparision with DNA Aspergillus oryzae 5'-CMP + 5'-phosphooligonucleotides
-
?
polyguanylic acid + H2O only 5% of activity with denaturated DNA at pH 4.6, 0.05 M NaCl and 45°C Aspergillus oryzae 5'-GMP + 5'-phosphooligonucleotides
-
?
polyinosinic acid + H2O
-
Penicillium citrinum 5'-IMP + 5'-phosphooligonucleotides
-
?
polyuridylic acid + H2O
-
Homo sapiens 5'-UMP + 5'-phosphooligonucleotides
-
?
polyuridylic acid + H2O
-
Penicillium citrinum 5'-UMP + 5'-phosphooligonucleotides
-
?
polyuridylic acid + H2O activity comparable with denaturated DNA at pH 4.6, 0.05 M NaCl and 45°C Aspergillus oryzae 5'-UMP + 5'-phosphooligonucleotides
-
?
RNA + H2O
-
Vigna radiata var. radiata 5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
RNA + H2O
-
Mus musculus 5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
RNA + H2O
-
Triticum aestivum 5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
RNA + H2O
-
Neurospora crassa 5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
RNA + H2O
-
Physarum polycephalum 5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
RNA + H2O
-
Aspergillus oryzae 5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
RNA + H2O
-
Ustilago maydis 5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
RNA + H2O
-
Penicillium citrinum 5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
ssDNA + H2O
-
Bacillus subtilis 5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
ssDNA + H2O
-
Homo sapiens 5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
ssDNA + H2O
-
Triticum aestivum 5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
ssDNA + H2O
-
Neurospora crassa 5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
ssDNA + H2O
-
Physarum polycephalum 5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
ssDNA + H2O
-
Aspergillus oryzae 5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
ssDNA + H2O
-
Ustilago maydis 5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
ssDNA + H2O
-
Penicillium citrinum 5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
ssDNA + H2O
-
Pseudoalteromonas espejiana 5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
ssDNA + H2O
-
Vigna radiata var. radiata 5'-phosphomononucleotides + 5'-phosphooligonucleotides from 5'-phosphomononucleotides to at least 5'-phosphoheptanucleotides ?
ssDNA + H2O
-
Mus musculus 5'-phosphomononucleotides + 5'-phosphooligonucleotides mainly 5'-phosphooligonucleotides with 5-10 residues ?
ssDNA + H2O 15 times more active towards thermally denaturated than native DNA Mustelus canis 5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?
ssDNA + H2O specificity for phosphodiester bonds adjoining deoxycytidine Escherichia coli 5'-phosphomononucleotides + 5'-phosphooligonucleotides 5'-phosphooligonucleotides with average chain lengh of about 50 ?
ssDNA + H2O
-
Bacillus subtilis Marburg / DSM 10 / ATCC 6051 5'-phosphomononucleotides + 5'-phosphooligonucleotides
-
?

Synonyms

Synonyms Comment Organism
Alteromonas BAL 31 nuclease
-
Pseudoalteromonas espejiana
Bacillus subtilis deoxyribonuclease
-
Bacillus subtilis
mung bean nuclease I
-
Vigna radiata var. radiata
Neurospora crassa nuclease
-
Neurospora crassa
P1 nuclease
-
Penicillium citrinum
Phage T4 endonuclease IV
-
Escherichia coli
Physarum polycephalum nuclease
-
Physarum polycephalum
single-strand-specific nuclease
-
Aspergillus oryzae
wheat seedling nuclease
-
Triticum aestivum

Temperature Range [°C]

Temperature Minimum [°C] Temperature Maximum [°C] Comment Organism
30 60 optimal temperature for denaturated DNA 60°C, 13% of maximal activity at 30°C Pseudoalteromonas espejiana
47 62 maximal hydrolysis rate of denaturated DNA and RNA Neurospora crassa

Temperature Stability [°C]

Temperature Stability Minimum [°C] Temperature Stability Maximum [°C] Comment Organism
60 70 stable to heating at pH 5.0 in the presence of both Zn2+ and sulfhydryl compounds Vigna radiata var. radiata
60 67 stable below 60°C, 50% inactivation after heating at 67°C for 15 min, pH 6.0 Penicillium citrinum
65
-
no inactivation of ribonuclease and deoxyribonuclease activity by heating at this temperature in the presence of substrate Aspergillus oryzae

pH Optimum

pH Optimum Minimum pH Optimum Maximum Comment Organism
4.5 5 with denaturated DNA in the presence of 1 mM Zn2+ Aspergillus oryzae
5
-
-
Vigna radiata var. radiata
5
-
with natural single-stranded DNA and RNA as substrate Penicillium citrinum
7.5 8.5 0.1-0.2 M Tris-HCl buffer Neurospora crassa
8
-
-
Physarum polycephalum
8
-
optimal in 0.1 M NaCl Mustelus canis
8 8.8
-
Pseudoalteromonas espejiana
9.2
-
-
Homo sapiens

pH Range

pH Minimum pH Maximum Comment Organism
4 6 with synthetic homopolynucleotides as substrate Penicillium citrinum
5.8 9.3
-
Aspergillus oryzae
5.8 9.3 50% of activity at pH 5.8 and 9.3 Neurospora crassa

pH Stability

pH Stability pH Stability Maximum Comment Organism
4.8 5.5 Zn2+ essential for stabilizing activity Triticum aestivum
5 8
-
Penicillium citrinum