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Literature summary for 3.1.26.11 extracted from
- When alls zed and done: the structure and function of RNase Z in prokaryotes (2007), Nat. Rev. Microbiol., 5, 278-286.
Crystallization (Commentary)
| Crystallization (Comment) | Organism |
|---|---|
| structures of free and RNA-bound prokaryotic tRNase Z proteins compared, overview, electrostatic surface representation, catalytic site and cleavage mechanism indicated, overview | Escherichia coli |
Organism
| Organism | UniProt | Comment | Textmining |
|---|---|---|---|
| Aspergillus nidulans | - |
tRNase Z, overview | - |
| Bacillus subtilis | P54548 | tRNase Z in prokaryotes, overview | - |
| Bacteroides fragilis | - |
tRNase Z in prokaryotes and archae, overview | - |
| Bombyx mori | - |
tRNase Z, overview | - |
| Bradyrhizobium japonicum | - |
tRNase Z in prokaryotes and archae, overview | - |
| Caenorhabditis elegans | - |
tRNase Z, overview | - |
| Chlamydia trachomatis | - |
tRNase Z in prokaryotes and archae, overview | - |
| Clostridium acetobutylicum | - |
tRNase Z in prokaryotes and archae, overview | - |
| Clostridium spp. | - |
tRNase Z in prokaryotes and archae, overview | - |
| Deinococcus radiodurans | - |
tRNase Z in prokaryotes and archae, overview | - |
| Drosophila melanogaster | - |
tRNase Z, overview | - |
| Escherichia coli | - |
tRNase Z in prokaryotes, overview | - |
| Haloquadratum walsbyi | - |
tRNase Z in prokaryotes and archae, overview | - |
| Lacticaseibacillus casei | - |
tRNase Z in prokaryotes and archae, overview | - |
| Listeria monocytogenes | - |
tRNase Z in prokaryotes and archae, overview | - |
| Methanocaldococcus jannaschii | - |
tRNase Z in prokaryotes and archae, overview | - |
| Methanococcoides burtonii | - |
tRNase Z in prokaryotes and archae, overview | - |
| Mycobacterium tuberculosis | - |
tRNase Z in prokaryotes and archae, overview | - |
| Myxococcus xanthus | - |
tRNase Z in prokaryotes and archae, overview | - |
| Nanoarchaeum equitans | - |
tRNase Z in prokaryotes and archae, overview | - |
| Prochlorococcus marinus | - |
tRNase Z in prokaryotes and archae, overview | - |
| Saccharolobus solfataricus | - |
tRNase Z in prokaryotes and archae, overview | - |
| Saccharomyces cerevisiae | - |
tRNase Z in prokaryotes, overview | - |
| Staphylococcus aureus | - |
tRNase Z in prokaryotes and archae, overview | - |
| Streptococcus pneumoniae | - |
tRNase Z in prokaryotes and archae, overview | - |
| Streptomyces coelicolor | - |
tRNase Z in prokaryotes and archae, overview | - |
| Thermotoga maritima | - |
tRNase Z in prokaryotes, overview | - |
| Treponema pallidum | - |
tRNase Z in prokaryotes and archae, overview | - |
| Xenopus laevis | - |
tRNase Z, overview | - |
Specific Activity [micromol/min/mg]
| Specific Activity Minimum [µmol/min/mg] | Specific Activity Maximum [µmol/min/mg] | Comment | Organism |
|---|---|---|---|
| additional information | - |
evidences for sigmoidal saturation kinetics discussed | Escherichia coli |
Substrates and Products (Substrate)
| Substrates | Comment Substrates | Organism | Products | Comment (Products) | Rev. | Reac. |
|---|---|---|---|---|---|---|
| bis(p-nitrophenyl)phosphate + H2O | evidences for sigmoidal saturation kinetics with the small chromogenic phosphodiester substrate reviewed | Escherichia coli | p-nitrophenol + p-nitrophenyl phosphate | - |
? |  |
Synonyms
| Synonyms | Comment | Organism |
|---|---|---|
| tRNase Z | - |
Drosophila melanogaster |
| tRNase Z | - |
Staphylococcus aureus |
| tRNase Z | - |
Chlamydia trachomatis |
| tRNase Z | - |
Escherichia coli |
| tRNase Z | - |
Saccharomyces cerevisiae |
| tRNase Z | - |
Bombyx mori |
| tRNase Z | - |
Aspergillus nidulans |
| tRNase Z | - |
Bradyrhizobium japonicum |
| tRNase Z | - |
Streptococcus pneumoniae |
| tRNase Z | - |
Lacticaseibacillus casei |
| tRNase Z | - |
Xenopus laevis |
| tRNase Z | - |
Caenorhabditis elegans |
| tRNase Z | - |
Mycobacterium tuberculosis |
| tRNase Z | - |
Bacteroides fragilis |
| tRNase Z | - |
Myxococcus xanthus |
| tRNase Z | - |
Streptomyces coelicolor |
| tRNase Z | - |
Saccharolobus solfataricus |
| tRNase Z | - |
Clostridium spp. |
| tRNase Z | - |
Clostridium acetobutylicum |
| tRNase Z | - |
Methanocaldococcus jannaschii |
| tRNase Z | - |
Thermotoga maritima |
| tRNase Z | - |
Deinococcus radiodurans |
| tRNase Z | - |
Listeria monocytogenes |
| tRNase Z | - |
Treponema pallidum |
| tRNase Z | - |
Prochlorococcus marinus |
| tRNase Z | - |
Bacillus subtilis |
| tRNase Z | - |
Nanoarchaeum equitans |
| tRNase Z | - |
Haloquadratum walsbyi |
| tRNase Z | - |
Methanococcoides burtonii |
| Trz | - |
Escherichia coli |
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