Literature summary for 3.1.21.4 extracted from

Lundin, S.; Jemt, A.; Terje-Hegge, F.; Foam, N.; Pettersson, E.; Kaeller, M.; Wirta, V.; Lexow, P.; Lundeberg, J.
Endonuclease specificity and sequence dependence of type IIS restriction enzymes (2015), PLoS ONE, 10, e0117059 .

Application

Application	Comment	Organism
molecular biology	a straightforward, general and automatable model system for studying the activity of restriction endonucleases by using massively parallel sequencing is described, which should be highly applicable for future studies of large sets of restriction endonucleases and their activity	Bacillus sp. R
molecular biology	a straightforward, general and automatable model system for studying the activity of restriction endonucleases by using massively parallel sequencing is described, which should be highly applicable for the future studies of large sets of restriction endonucleases and their activity	Lysinibacillus sphaericus
molecular biology	a straightforward, general and automatable model system for studying the activity of restriction endonucleases by using massively parallel sequencing is described, which should be highly applicable for the future studies of large sets of restriction endonucleases and their activity	Bacillus pumilus
molecular biology	a straightforward, general and automatable model system for studying the activity of restriction endonucleases by using massively parallel sequencing is described, which should be highly applicable for the future studies of large sets of restriction endonucleases and their activity	Gluconobacter oxydans
molecular biology	a straightforward, general and automatable model system for studying the activity of restriction endonucleases by using massively parallel sequencing is described, which should be highly applicable for the future studies of large sets of restriction endonucleases and their activity	Flavobacterium aquatile
molecular biology	a straightforward, general and automatable model system for studying the activity of restriction endonucleases by using massively parallel sequencing is described, which should be highly applicable for the future studies of large sets of restriction endonucleases and their activity	Sphingobacterium multivorum
molecular biology	a straightforward, general and automatable model system for studying the activity of restriction endonucleases by using massively parallel sequencing is described, which should be highly applicable for the future studies of large sets of restriction endonucleases and their activity	Methylophilus methylotrophus
molecular biology	a straightforward, general and automatable model system for studying the activity of restriction endonucleases by using massively parallel sequencing is described, which should be highly applicable for the future studies of large sets of restriction endonucleases and their activity	Acinetobacter calcoaceticus
molecular biology	a straightforward, general and automatable model system for studying the activity of restriction endonucleases by using massively parallel sequencing is described, which should be highly applicable for the future studies of large sets of restriction endonucleases and their activity	Brevibacillus brevis
molecular biology	a straightforward, general and automatable model system for studying the activity of restriction endonucleases by using massively parallel sequencing is described, which should be highly applicable for the future studies of large sets of restriction endonucleases and their activity	Planomicrobium okeanokoites
molecular biology	a straightforward, general and automatable model system for studying the activity of restriction endonucleases by using massively parallel sequencing is described, which should be highly applicable for the future studies of large sets of restriction endonucleases and their activity	Escherichia coli

Organism

Organism	UniProt	Comment	Textmining
Acinetobacter calcoaceticus	E3VX85	-	-
Bacillus pumilus	-	-	-
Bacillus pumilus	Q8KRW6	-	-
Bacillus pumilus 2187a	-	-	-
Bacillus sp. R	Q6UQ57	-	-
Brevibacillus brevis	E5LGB4	-	-
Escherichia coli	P25239	-	-
Escherichia coli	Q5ZND2	-	-
Escherichia coli P15	Q5ZND2	-	-
Escherichia coli RFL57	P25239	-	-
Flavobacterium aquatile	-	-	-
Gluconobacter oxydans	-	-	-
Gluconobacter oxydans H-15T	-	-	-
Lysinibacillus sphaericus	-	GC subgroup	-
Methylophilus methylotrophus	B2MU09	-	-
Planomicrobium okeanokoites	P14870	-	-
Sphingobacterium multivorum	-	-	-
Sphingobacterium multivorum RFL21	-	-	-

Synonyms

Synonyms	Comment	Organism
AcuI	-	Acinetobacter calcoaceticus
acuIRM	-	Acinetobacter calcoaceticus
BbvI	-	Brevibacillus brevis
bbvIR	-	Brevibacillus brevis
BpmI	-	Bacillus pumilus
bpmIR	-	Bacillus pumilus
BpuEI	-	Bacillus pumilus
BseRI	-	Bacillus sp. R
BseRI endonuclease	-	Bacillus sp. R
BsgI	-	Lysinibacillus sphaericus
Eco57I	-	Escherichia coli
eco57IR	-	Escherichia coli
EcoP15I	-	Escherichia coli
ecoP15Ires	-	Escherichia coli
FauI	-	Flavobacterium aquatile
FokI	-	Planomicrobium okeanokoites
fokIR	-	Planomicrobium okeanokoites
GsuI	-	Gluconobacter oxydans
MmeI	-	Methylophilus methylotrophus
mmeIRM	-	Methylophilus methylotrophus
SmuI	-	Sphingobacterium multivorum