Literature summary for 3.1.13.5 extracted from

Zuo, Y.; Wang, Y.; Malhotra, A.
Crystal structure of Escherichia coli RNase D, an exoribonuclease involved in structured RNA processing (2005), Structure, 13, 973-984.

Cloned(Commentary)

Cloned (Comment)	Organism
-	Escherichia coli

Crystallization (Commentary)

Crystallization (Comment)	Organism
1.6 A resolution crystal structure. Hanging-drop technique was used for subsequent crystal optimizations. Each drop contains equal volumes of protein and reservoir solution. RNase D protein crystallizes in the presence of 2.02.5 M ammonium sulfate and various buffer conditions. The crystals used here are grown with a reservoir containing 2.22.3 sulfate and 0.1 M HEPES (pH 7.0). Crystals of RNase D usually appeared overnight under these conditions. Crystals grow to full size in 27 days, with a maximum size of over 1 mm in each dimension. Zn2+ -containing crystals are grown with 1 mM ZnSO4 included in the reservoir prior to drop setup. Mercury(II) derivatives are prepared by soaking RNase D crystals (without Zn2+) overnight in the mother liquor containing 5 mM HgSO4	Escherichia coli

Crystallization (Comment)

Organism

1.6 A resolution crystal structure. Hanging-drop technique was used for subsequent crystal optimizations. Each drop contains equal volumes of protein and reservoir solution. RNase D protein crystallizes in the presence of 2.02.5 M ammonium sulfate and various buffer conditions. The crystals used here are grown with a reservoir containing 2.22.3 sulfate and 0.1 M HEPES (pH 7.0). Crystals of RNase D usually appeared overnight under these conditions. Crystals grow to full size in 27 days, with a maximum size of over 1 mm in each dimension. Zn2+ -containing crystals are grown with 1 mM ZnSO4 included in the reservoir prior to drop setup. Mercury(II) derivatives are prepared by soaking RNase D crystals (without Zn2+) overnight in the mother liquor containing 5 mM HgSO4

Escherichia coli

Natural Substrates/ Products (Substrates)

Natural Substrates	Organism	Comment (Nat. Sub.)	Natural Products	Comment (Nat. Pro.)	Rev.	Reac.
additional information	Escherichia coli	enzyme is involved in structured RNA processing	?	-	?

Organism

Organism	UniProt	Comment	Textmining
Escherichia coli	-	-	-

Purification (Commentary)

Purification (Comment)	Organism
-	Escherichia coli

Substrates and Products (Substrate)

Substrates	Comment Substrates	Organism	Products	Comment (Products)	Rev.	Reac.
additional information	enzyme is involved in structured RNA processing	Escherichia coli	?	-	?

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Release 2023.1 (January 2023)