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Literature summary for 2.1.1.269 extracted from
- Diversity of dimethylsulfoniopropionate degradation genes reveals the significance of marine Roseobacter clade in sulfur metabolism in coastal areas of antarctic Maxwell Bay (2019), Curr. Microbiol., 76, 967-974 .
Cloned(Commentary)
| Cloned (Comment) | Organism |
|---|---|
| gene dmdA, genotyping in samples collected from the surface seawater of Ardley Cove and Great Wall Cove in Antarctic Maxwell Bay, clone library construction and sequencing, determination of GenBank IDs KF153913-KF153928 and KF486968-KF487000 for dmdA genes from uncultured bacteria, phylogenetic tree, overview | Roseobacter sp. |
| gene dmdA, genotyping in samples collected from the surface seawater of Ardley Cove and Great Wall Cove in Antarctic Maxwell Bay, clone library construction and sequencing, determination of GenBank IDs KF153913-KF153928 and KF486968-KF487000 for dmdA genes from uncultured bacteria, phylogenetic tree, overview | Sulfitobacter sp. |
| gene dmdA, genotyping in samples collected from the surface seawater of Ardley Cove and Great Wall Cove in Antarctic Maxwell Bay, clone library construction and sequencing, determination of GenBank IDs KF153913-KF153928 and KF486968-KF487000 for dmdA genes from uncultured bacteria, phylogenetic tree, overview | Litoreibacter sp. |
| gene dmdA, genotyping in samples collected from the surface seawater of Ardley Cove and Great Wall Cove in Antarctic Maxwell Bay, clone library construction and sequencing, determination of GenBank IDs KF153913-KF153928 and KF486968-KF487000 for dmdA genes from uncultured bacteria, phylogenetic tree, overview | Loktanella sp. |
| gene dmdA, genotyping in samples collected from the surface seawater of Ardley Cove and Great Wall Cove in Antarctic Maxwell Bay, clone library construction and sequencing, determination of GenBank IDs KF153913-KF153928 and KF486968-KF487000 for dmdA genes from uncultured bacteria, phylogenetic tree, overview | Octadecabacter sp. |
| gene dmdA, genotyping in samples collected from the surface seawater of Ardley Cove and Great Wall Cove in Antarctic Maxwell Bay, clone library construction and sequencing, determination of GenBank IDs KF153913-KF153928 and KF486968-KF487000 for dmdA genes from uncultured bacteria, phylogenetic tree, overview | Ruegeria sp. |
Natural Substrates/ Products (Substrates)
| Natural Substrates | Organism | Comment (Nat. Sub.) | Natural Products | Comment (Nat. Pro.) | Rev. | Reac. |
|---|---|---|---|---|---|---|
| S,S-dimethyl-beta-propiothetin + tetrahydrofolate | Roseobacter sp. | - |
3-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate | - |
? |  |
| S,S-dimethyl-beta-propiothetin + tetrahydrofolate | Sulfitobacter sp. | - |
3-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate | - |
? | |
| S,S-dimethyl-beta-propiothetin + tetrahydrofolate | Litoreibacter sp. | - |
3-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate | - |
? | |
| S,S-dimethyl-beta-propiothetin + tetrahydrofolate | Loktanella sp. | - |
3-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate | - |
? | |
| S,S-dimethyl-beta-propiothetin + tetrahydrofolate | Octadecabacter sp. | - |
3-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate | - |
? | |
| S,S-dimethyl-beta-propiothetin + tetrahydrofolate | Ruegeria sp. | - |
3-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate | - |
? | |
Organism
| Organism | UniProt | Comment | Textmining |
|---|---|---|---|
| Litoreibacter sp. | - |
- |
- |
| Loktanella sp. | - |
- |
- |
| Octadecabacter sp. | - |
- |
- |
| Roseobacter sp. | - |
- |
- |
| Ruegeria sp. | - |
- |
- |
| Sulfitobacter sp. | - |
- |
- |
Substrates and Products (Substrate)
| Substrates | Comment Substrates | Organism | Products | Comment (Products) | Rev. | Reac. |
|---|---|---|---|---|---|---|
| S,S-dimethyl-beta-propiothetin + tetrahydrofolate | - |
Roseobacter sp. | 3-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate | - |
? | |
| S,S-dimethyl-beta-propiothetin + tetrahydrofolate | - |
Sulfitobacter sp. | 3-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate | - |
? | |
| S,S-dimethyl-beta-propiothetin + tetrahydrofolate | - |
Litoreibacter sp. | 3-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate | - |
? | |
| S,S-dimethyl-beta-propiothetin + tetrahydrofolate | - |
Loktanella sp. | 3-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate | - |
? | |
| S,S-dimethyl-beta-propiothetin + tetrahydrofolate | - |
Octadecabacter sp. | 3-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate | - |
? | |
| S,S-dimethyl-beta-propiothetin + tetrahydrofolate | - |
Ruegeria sp. | 3-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate | - |
? | |
Synonyms
| Synonyms | Comment | Organism |
|---|---|---|
| DmdA | - |
Roseobacter sp. |
| DmdA | - |
Sulfitobacter sp. |
| DmdA | - |
Litoreibacter sp. |
| DmdA | - |
Loktanella sp. |
| DmdA | - |
Octadecabacter sp. |
| DmdA | - |
Ruegeria sp. |
| DMSP demethylase | - |
Roseobacter sp. |
| DMSP demethylase | - |
Sulfitobacter sp. |
| DMSP demethylase | - |
Litoreibacter sp. |
| DMSP demethylase | - |
Loktanella sp. |
| DMSP demethylase | - |
Octadecabacter sp. |
| DMSP demethylase | - |
Ruegeria sp. |
Cofactor
| Cofactor | Comment | Organism | Structure |
|---|---|---|---|
| tetrahydrofolate | - |
Roseobacter sp. | |
| tetrahydrofolate | - |
Sulfitobacter sp. | |
| tetrahydrofolate | - |
Litoreibacter sp. | |
| tetrahydrofolate | - |
Loktanella sp. | |
| tetrahydrofolate | - |
Octadecabacter sp. | |
| tetrahydrofolate | - |
Ruegeria sp. | |
General Information
| General Information | Comment | Organism |
|---|---|---|
| evolution | analysis of diversity of genes encoding DMSP demethylase (dmdA) and DMSP lyases (dddD, dddL, and dddP) in bacteria in the surface seawater of Ardley Cove and Great Wall Cove in Antarctic Maxwell Bay using DMSP degradation gene clone library analysis, overview. Both bacterial dmdA and dddP genes found in the two coves are completely confined to the Roseobacter clade, which indicated that this clade plays a significant role in DMSP catabolism in the coastal seawaters of Maxwell Bay. Diversity and distribution of dmdA genes within the Roseobacter clade, including the genera Litoreibacter, Loktanella, Octadecabacter, Roseobacter, Ruegeria, and Sulfitobacter, phylogenetic tree, overview | Roseobacter sp. |
| evolution | analysis of diversity of genes encoding DMSP demethylase (dmdA) and DMSP lyases (dddD, dddL, and dddP) in bacteria in the surface seawater of Ardley Cove and Great Wall Cove in Antarctic Maxwell Bay using DMSP degradation gene clone library analysis, overview. Both bacterial dmdA and dddP genes found in the two coves are completely confined to the Roseobacter clade, which indicated that this clade plays a significant role in DMSP catabolism in the coastal seawaters of Maxwell Bay. Diversity and distribution of dmdA genes within the Roseobacter clade, including the genera Litoreibacter, Loktanella, Octadecabacter, Roseobacter, Ruegeria, and Sulfitobacter, phylogenetic tree, overview | Litoreibacter sp. |
| evolution | analysis of diversity of genes encoding DMSP demethylase (dmdA) and DMSP lyases (dddD, dddL, and dddP) in bacteria in the surface seawater of Ardley Cove and Great Wall Cove in Antarctic Maxwell Bay using DMSP degradation gene clone library analysis, overview. Both bacterial dmdA and dddP genes found in the two coves are completely confined to the Roseobacter clade, which indicated that this clade plays a significant role in DMSP catabolism in the coastal seawaters of Maxwell Bay. Diversity and distribution of dmdA genes within theRoseobacter clade, including the genera Litoreibacter, Loktanella, Octadecabacter, Roseobacter, Ruegeria, and Sulfitobacter, phylogenetic tree, overview | Sulfitobacter sp. |
| evolution | analysis of diversity of genes encoding DMSP demethylase (dmdA) and DMSP lyases (dddD, dddL, and dddP) in bacteria in the surface seawater of Ardley Cove and Great Wall Cove in Antarctic Maxwell Bay using DMSP degradation gene clone library analysis, overview. Both bacterial dmdA and dddP genes found in the two coves are completely confined to the Roseobacter clade, which indicated that this clade plays a significant role in DMSP catabolism in the coastal seawaters of Maxwell Bay. Diversity and distribution of dmdA genes within theRoseobacter clade, including the genera Litoreibacter, Loktanella, Octadecabacter, Roseobacter, Ruegeria, and Sulfitobacter, phylogenetic tree, overview | Loktanella sp. |
| evolution | analysis of diversity of genes encoding DMSP demethylase (dmdA) and DMSP lyases (dddD, dddL, and dddP) in bacteria in the surface seawater of Ardley Cove and Great Wall Cove in Antarctic Maxwell Bay using DMSP degradation gene clone library analysis, overview. Both bacterial dmdA and dddP genes found in the two coves are completely confined to the Roseobacter clade, which indicated that this clade plays a significant role in DMSP catabolism in the coastal seawaters of Maxwell Bay. Diversity and distribution of dmdA genes within theRoseobacter clade, including the genera Litoreibacter, Loktanella, Octadecabacter, Roseobacter, Ruegeria, and Sulfitobacter, phylogenetic tree, overview | Octadecabacter sp. |
| evolution | analysis of diversity of genes encoding DMSP demethylase (dmdA) and DMSP lyases (dddD, dddL, and dddP) in bacteria in the surface seawater of Ardley Cove and Great Wall Cove in Antarctic Maxwell Bay using DMSP degradation gene clone library analysis, overview. Both bacterial dmdA and dddP genes found in the two coves are completely confined to the Roseobacter clade, which indicated that this clade plays a significant role in DMSP catabolism in the coastal seawaters of Maxwell Bay. Diversity and distribution of dmdA genes within theRoseobacter clade, including the genera Litoreibacter, Loktanella, Octadecabacter, Roseobacter, Ruegeria, and Sulfitobacter, phylogenetic tree, overview | Ruegeria sp. |
| metabolism | both bipolar and endemic bacterial DMSP degradation genes exist in polar marine environments | Roseobacter sp. |
| metabolism | both bipolar and endemic bacterial DMSP degradation genes exist in polar marine environments | Sulfitobacter sp. |
| metabolism | both bipolar and endemic bacterial DMSP degradation genes exist in polar marine environments | Litoreibacter sp. |
| metabolism | both bipolar and endemic bacterial DMSP degradation genes exist in polar marine environments | Loktanella sp. |
| metabolism | both bipolar and endemic bacterial DMSP degradation genes exist in polar marine environments | Octadecabacter sp. |
| metabolism | both bipolar and endemic bacterial DMSP degradation genes exist in polar marine environments | Ruegeria sp. |
| physiological function | Roseobacter plays a significant role in DMSP catabolism in the coastal seawaters of Maxwell Bay | Roseobacter sp. |
| physiological function | Roseobacter plays a significant role in DMSP catabolism in the coastal seawaters of Maxwell Bay | Sulfitobacter sp. |
| physiological function | Roseobacter plays a significant role in DMSP catabolism in the coastal seawaters of Maxwell Bay | Litoreibacter sp. |
| physiological function | Roseobacter plays a significant role in DMSP catabolism in the coastal seawaters of Maxwell Bay | Loktanella sp. |
| physiological function | Roseobacter plays a significant role in DMSP catabolism in the coastal seawaters of Maxwell Bay | Octadecabacter sp. |
| physiological function | Roseobacter plays a significant role in DMSP catabolism in the coastal seawaters of Maxwell Bay | Ruegeria sp. |
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Release 2023.1 (January 2023)
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