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Literature summary for 2.1.1.269 extracted from

  • Cui, Y.; Suzuki, S.; Omori, Y.; Wong, S.K.; Ijichi, M.; Kaneko, R.; Kameyama, S.; Tanimoto, H.; Hamasaki, K.
    Abundance and distribution of dimethylsulfoniopropionate degradation genes and the corresponding bacterial community structure at dimethyl sulfide hot spots in the tropical and subtropical pacific ocean (2015), Appl. Environ. Microbiol., 81, 4184-4194.
    View publication on PubMedView publication on EuropePMC

Cloned(Commentary)

Cloned (Comment) Organism
gene dmdA, genotyping in marine bacteria, overview Roseobacter sp.
gene dmdA, genotyping in marine bacteria, overview Candidatus Pelagibacter ubique
gene dmdA, genotyping in marine bacteria, overview Candidatus Puniceispirillum marinum

Organism

Organism UniProt Comment Textmining
Candidatus Pelagibacter ubique
-
gene dmdA
-
Candidatus Pelagibacter ubique HTCC7211
-
gene dmdA
-
Candidatus Puniceispirillum marinum
-
gene dmdA
-
Candidatus Puniceispirillum marinum IMCC1322
-
gene dmdA
-
Roseobacter sp.
-
gene dmdA
-

Synonyms

Synonyms Comment Organism
DMSP demethylase
-
Roseobacter sp.
DMSP demethylase
-
Candidatus Pelagibacter ubique
DMSP demethylase
-
Candidatus Puniceispirillum marinum

General Information

General Information Comment Organism
evolution phylogenetic analysis, multidimensional analysis based on the abundances of dimethylsulfoniopropionate degradation genes and environmental factors reveal that the distribution pattern of these genes is influenced by chlorophyll a concentrations and temperatures. dddP genes, dmdA subclade C/2 genes, and dmdA subclade D genes exhibit significant correlations with the marine Roseobacter clade, SAR11 subgroup Ib, and SAR11 subgroup Ia, respectively. SAR11 subgroups Ia and Ib, which possess dmdA genes, are suggested to be the main potential dimethylsulfoniopropionate consumers Roseobacter sp.
evolution phylogenetic analysis, multidimensional analysis based on the abundances of dimethylsulfoniopropionate degradation genes and environmental factors reveal that the distribution pattern of these genes is influenced by chlorophyll a concentrations and temperatures. dddP genes, dmdA subclade C/2 genes, and dmdA subclade D genes exhibit significant correlations with the marine Roseobacter clade, SAR11 subgroup Ib, and SAR11 subgroup Ia, respectively. SAR11 subgroups Ia and Ib, which possess dmdA genes, are suggested to be the main potential dimethylsulfoniopropionate consumers Candidatus Pelagibacter ubique
evolution phylogenetic analysis, multidimensional analysis based on the abundances of dimethylsulfoniopropionate degradation genes and environmental factors reveal that the distribution pattern of these genes is influenced by chlorophyll a concentrations and temperatures. dddP genes, dmdA subclade C/2 genes, and dmdA subclade D genes exhibit significant correlations with the marine Roseobacter clade, SAR11 subgroup Ib, and SAR11 subgroup Ia, respectively. SAR11 subgroups Ia and Ib, which possess dmdA genes, are suggested to be the main potential dimethylsulfoniopropionate consumers Candidatus Puniceispirillum marinum
physiological function DMSP demethylase is responsible for the dimethylsulfoniopropionate assimilation Roseobacter sp.
physiological function DMSP demethylase is responsible for the dimethylsulfoniopropionate assimilation Candidatus Pelagibacter ubique
physiological function DMSP demethylase is responsible for the dimethylsulfoniopropionate assimilation Candidatus Puniceispirillum marinum