BRENDA - Enzyme Database
show all sequences of 2.1.1.269

Changes in dimethylsulfoniopropionate demethylase gene assemblages in response to an induced phytoplankton bloom

Howard, E.C.; Sun, S.; Reisch, C.R.; del Valle, D.A.; Buergmann, H.; Kiene, R.P.; Moran, M.A.; Appl. Environ. Microbiol. 77, 524-531 (2011)

Data extracted from this reference:

Cloned(Commentary)
Cloned (Commentary)
Organism
gene dmdA, genetic cluster identification from 578 dmdA sequences from seawater plankton probes, DNA and amino acid sequence determination and analysis, phylogenetic analysis
Candidatus Pelagibacter ubique
gene dmdA, genetic cluster identification from 578 dmdA sequences from seawater plankton probes, DNA and amino acid sequence determination and analysis, phylogenetic analysis
Candidatus Puniceispirillum marinum
gene dmdA, genetic cluster identification from 578 dmdA sequences from seawater plankton probes, DNA and amino acid sequence determination and analysis, phylogenetic analysis
Roseobacter sp.
gene dmdA, genetic cluster identification from 578 dmdA sequences from seawater plankton probes, DNA and amino acid sequence determination and analysis, phylogenetic analysis
unidentified marine bacterioplankton
Organism
Organism
UniProt
Commentary
Textmining
Candidatus Pelagibacter ubique
-
pelagibacteraceae, in phytoplankton bloom in Gulf of Mexico seawater, gene dmdA, SAR11 group, clade C, genetic cluster identification from 578 dmdA sequences; pelagibacteraceae, strains HTCC1002 and HTCC1062, in phytoplankton bloom in Gulf of Mexico seawater, gene dmdA, SAR11 group, clade D, genetic cluster identification from 578 dmdA sequences
-
Candidatus Pelagibacter ubique HTCC7211
-
pelagibacteraceae, in phytoplankton bloom in Gulf of Mexico seawater, gene dmdA, SAR11 group, clade C, genetic cluster identification from 578 dmdA sequences
-
Candidatus Puniceispirillum marinum
-
pelagibacteraceae, in phytoplankton bloom in Gulf of Mexico seawater, gene dmdA, SAR11 group, clade B, genetic cluster identification from 578 dmdA sequences
-
Flavobacteriaceae
-
in phytoplankton bloom in Gulf of Mexico seawater, gene dmdA, genetic cluster identification from 578 dmdA sequences
-
Rhodobacterales
-
in phytoplankton bloom in Gulf of Mexico seawater, gene dmdA, OM60 group, genetic cluster OM60-like identification from 578 dmdA sequences
-
Rhodospirillales
-
in phytoplankton bloom in Gulf of Mexico seawater, gene dmdA, clade A, genetic cluster identification from 578 dmdA sequences
-
Roseobacter sp.
-
in phytoplankton bloom in Gulf of Mexico seawater, gene dmdA, clade A, genetic cluster identification from 578 dmdA sequences
-
Sphingomonadales
-
in phytoplankton bloom in Gulf of Mexico seawater, gene dmdA, OM60 group, genetic cluster OM60-like identification from 578 dmdA sequences
-
unidentified marine bacterioplankton
-
pelagibacteraceae, strains HTCC1002 and HTCC1062, in phytoplankton bloom in Gulf of Mexico seawater, gene dmdA, OM60 group, clade E, genetic cluster identification from 578 dmdA sequences
-
unidentified marine bacterioplankton HTCC2080
-
pelagibacteraceae, strains HTCC1002 and HTCC1062, in phytoplankton bloom in Gulf of Mexico seawater, gene dmdA, OM60 group, clade E, genetic cluster identification from 578 dmdA sequences
-
Synonyms
Synonyms
Commentary
Organism
DmdA
-
Candidatus Puniceispirillum marinum
DmdA
-
Flavobacteriaceae
DmdA
-
Rhodobacterales
DmdA
-
Rhodospirillales
DmdA
-
Roseobacter sp.
DmdA
-
Sphingomonadales
DmdA
-
unidentified marine bacterioplankton
DmdA
-
Candidatus Pelagibacter ubique
DMSP demethylase
-
Flavobacteriaceae
DMSP demethylase
-
Rhodobacterales
DMSP demethylase
-
Rhodospirillales
DMSP demethylase
-
Sphingomonadales
DMSP demethylase
-
unidentified marine bacterioplankton
DMSP demethylase
-
Candidatus Pelagibacter ubique
DMSP demethylase
-
Candidatus Puniceispirillum marinum
DMSP demethylase
-
Roseobacter sp.
Cloned(Commentary) (protein specific)
Commentary
Organism
gene dmdA, genetic cluster identification from 578 dmdA sequences from seawater plankton probes, DNA and amino acid sequence determination and analysis, phylogenetic analysis
Candidatus Pelagibacter ubique
gene dmdA, genetic cluster identification from 578 dmdA sequences from seawater plankton probes, DNA and amino acid sequence determination and analysis, phylogenetic analysis
Candidatus Puniceispirillum marinum
gene dmdA, genetic cluster identification from 578 dmdA sequences from seawater plankton probes, DNA and amino acid sequence determination and analysis, phylogenetic analysis
Roseobacter sp.
gene dmdA, genetic cluster identification from 578 dmdA sequences from seawater plankton probes, DNA and amino acid sequence determination and analysis, phylogenetic analysis
unidentified marine bacterioplankton
General Information
General Information
Commentary
Organism
metabolism
the enzyme catalyzes the first step of the dimethylsulfoniopropionate, DMSP, cleavage pathway. DMSP is a ubiquitous phytoplankton metabolite that is degraded by marine microorganisms by at least two major pathways
Candidatus Pelagibacter ubique
metabolism
the enzyme catalyzes the first step of the dimethylsulfoniopropionate, DMSP, cleavage pathway. DMSP is a ubiquitous phytoplankton metabolite that is degraded by marine microorganisms by at least two major pathways
Candidatus Puniceispirillum marinum
metabolism
the enzyme catalyzes the first step of the dimethylsulfoniopropionate, DMSP, cleavage pathway. DMSP is a ubiquitous phytoplankton metabolite that is degraded by marine microorganisms by at least two major pathways
Flavobacteriaceae
metabolism
the enzyme catalyzes the first step of the dimethylsulfoniopropionate, DMSP, cleavage pathway. DMSP is a ubiquitous phytoplankton metabolite that is degraded by marine microorganisms by at least two major pathways
Rhodobacterales
metabolism
the enzyme catalyzes the first step of the dimethylsulfoniopropionate, DMSP, cleavage pathway. DMSP is a ubiquitous phytoplankton metabolite that is degraded by marine microorganisms by at least two major pathways
Rhodospirillales
metabolism
the enzyme catalyzes the first step of the dimethylsulfoniopropionate, DMSP, cleavage pathway. DMSP is a ubiquitous phytoplankton metabolite that is degraded by marine microorganisms by at least two major pathways
Roseobacter sp.
metabolism
the enzyme catalyzes the first step of the dimethylsulfoniopropionate, DMSP, cleavage pathway. DMSP is a ubiquitous phytoplankton metabolite that is degraded by marine microorganisms by at least two major pathways
Sphingomonadales
metabolism
the enzyme catalyzes the first step of the dimethylsulfoniopropionate, DMSP, cleavage pathway. DMSP is a ubiquitous phytoplankton metabolite that is degraded by marine microorganisms by at least two major pathways
unidentified marine bacterioplankton
General Information (protein specific)
General Information
Commentary
Organism
metabolism
the enzyme catalyzes the first step of the dimethylsulfoniopropionate, DMSP, cleavage pathway. DMSP is a ubiquitous phytoplankton metabolite that is degraded by marine microorganisms by at least two major pathways
Candidatus Pelagibacter ubique
metabolism
the enzyme catalyzes the first step of the dimethylsulfoniopropionate, DMSP, cleavage pathway. DMSP is a ubiquitous phytoplankton metabolite that is degraded by marine microorganisms by at least two major pathways
Candidatus Puniceispirillum marinum
metabolism
the enzyme catalyzes the first step of the dimethylsulfoniopropionate, DMSP, cleavage pathway. DMSP is a ubiquitous phytoplankton metabolite that is degraded by marine microorganisms by at least two major pathways
Flavobacteriaceae
metabolism
the enzyme catalyzes the first step of the dimethylsulfoniopropionate, DMSP, cleavage pathway. DMSP is a ubiquitous phytoplankton metabolite that is degraded by marine microorganisms by at least two major pathways
Rhodobacterales
metabolism
the enzyme catalyzes the first step of the dimethylsulfoniopropionate, DMSP, cleavage pathway. DMSP is a ubiquitous phytoplankton metabolite that is degraded by marine microorganisms by at least two major pathways
Rhodospirillales
metabolism
the enzyme catalyzes the first step of the dimethylsulfoniopropionate, DMSP, cleavage pathway. DMSP is a ubiquitous phytoplankton metabolite that is degraded by marine microorganisms by at least two major pathways
Roseobacter sp.
metabolism
the enzyme catalyzes the first step of the dimethylsulfoniopropionate, DMSP, cleavage pathway. DMSP is a ubiquitous phytoplankton metabolite that is degraded by marine microorganisms by at least two major pathways
Sphingomonadales
metabolism
the enzyme catalyzes the first step of the dimethylsulfoniopropionate, DMSP, cleavage pathway. DMSP is a ubiquitous phytoplankton metabolite that is degraded by marine microorganisms by at least two major pathways
unidentified marine bacterioplankton
Other publictions for EC 2.1.1.269
No.
1st author
Pub Med
title
organims
journal
volume
pages
year
Activating Compound
Application
Cloned(Commentary)
Crystallization (Commentary)
Engineering
General Stability
Inhibitors
KM Value [mM]
Localization
Metals/Ions
Molecular Weight [Da]
Natural Substrates/ Products (Substrates)
Organic Solvent Stability
Organism
Oxidation Stability
Posttranslational Modification
Purification (Commentary)
Reaction
Renatured (Commentary)
Source Tissue
Specific Activity [micromol/min/mg]
Storage Stability
Substrates and Products (Substrate)
Subunits
Synonyms
Temperature Optimum [°C]
Temperature Range [°C]
Temperature Stability [°C]
Turnover Number [1/s]
pH Optimum
pH Range
pH Stability
Cofactor
Ki Value [mM]
pI Value
IC50 Value
Activating Compound (protein specific)
Application (protein specific)
Cloned(Commentary) (protein specific)
Cofactor (protein specific)
Crystallization (Commentary) (protein specific)
Engineering (protein specific)
General Stability (protein specific)
IC50 Value (protein specific)
Inhibitors (protein specific)
Ki Value [mM] (protein specific)
KM Value [mM] (protein specific)
Localization (protein specific)
Metals/Ions (protein specific)
Molecular Weight [Da] (protein specific)
Natural Substrates/ Products (Substrates) (protein specific)
Organic Solvent Stability (protein specific)
Oxidation Stability (protein specific)
Posttranslational Modification (protein specific)
Purification (Commentary) (protein specific)
Renatured (Commentary) (protein specific)
Source Tissue (protein specific)
Specific Activity [micromol/min/mg] (protein specific)
Storage Stability (protein specific)
Substrates and Products (Substrate) (protein specific)
Subunits (protein specific)
Temperature Optimum [°C] (protein specific)
Temperature Range [°C] (protein specific)
Temperature Stability [°C] (protein specific)
Turnover Number [1/s] (protein specific)
pH Optimum (protein specific)
pH Range (protein specific)
pH Stability (protein specific)
pI Value (protein specific)
Expression
General Information
General Information (protein specific)
Expression (protein specific)
KCat/KM [mM/s]
KCat/KM [mM/s] (protein specific)
735504
Cui
Abundance and distribution of ...
Candidatus Pelagibacter ubique, Candidatus Pelagibacter ubique HTCC7211, Candidatus Puniceispirillum marinum, Candidatus Puniceispirillum marinum IMCC1322, Roseobacter sp.
Appl. Environ. Microbiol.
81
4184-4194
2015
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3
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9
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3
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3
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6
6
-
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-
736286
Varaljay
Single-taxon field measurement ...
Roseobacter sp., Roseobacter sp. HTCC 2255, Ruegeria pomeroyi
ISME J.
9
1677-1686
2015
-
-
2
-
-
-
-
-
-
-
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3
-
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4
4
-
-
-
720998
Schuller
Structures of dimethylsulfonio ...
Candidatus Pelagibacter ubique, Candidatus Pelagibacter ubique HTCC1062
Protein Sci.
21
289-298
2012
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-
1
1
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1
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6
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1
1
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2
1
2
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1
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1
2
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1
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1
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2
1
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1
1
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718639
Howard
Changes in dimethylsulfoniopro ...
Candidatus Pelagibacter ubique, Candidatus Pelagibacter ubique HTCC7211, Candidatus Puniceispirillum marinum, Flavobacteriaceae, Rhodobacterales, Rhodospirillales, Roseobacter sp., Sphingomonadales, unidentified marine bacterioplankton, unidentified marine bacterioplankton HTCC2080
Appl. Environ. Microbiol.
77
524-531
2011
-
-
4
-
-
-
-
-
-
-
-
-
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15
-
-
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16
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4
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8
8
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698600
Reisch
Dimethylsulfoniopropionate-dep ...
Candidatus Pelagibacter ubique, Candidatus Pelagibacter ubique HTCC1062, Ruegeria pomeroyi
J. Bacteriol.
190
8018-8024
2008
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2
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8
7
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4
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12
-
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2
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12
2
8
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4
2
2
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2
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2
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8
2
7
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5
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3
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12
3
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4
3
3
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2
2
701221
Howard
Bacterial taxa that limit sulf ...
Candidatus Pelagibacter ubique, Ruegeria pomeroyi DSS-3
Science
314
649-652
2006
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1
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2
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4
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4
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8
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2
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1
2
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4
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721447
Jansen
Tetrahydrofolate serves as a m ...
uncultured bacterium, uncultured bacterium WN
Arch. Microbiol.
169
84-87
1998
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2
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2
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1
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1
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4
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1
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1
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