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show all sequences of 1.21.98.3

Distribution and origin of oxygen-dependent and oxygen-independent forms of Mg-protoporphyrin monomethylester cyclase among phototrophic proteobacteria

Boldareva-Nuianzina, E.N.; Blahova, Z.; Sobotka, R.; Koblizek, M.; Appl. Environ. Microbiol. 79, 2596-2604 (2013)

Data extracted from this reference:

Organism
Organism
Primary Accession No. (UniProt)
Commentary
Textmining
Citromicrobium sp. CV44
G3GIX0
-
-
Methylobacteriaceae bacterium RM11-8-1
J9JE44
-
-
Rhodobaca bogoriensis
J9JE46
-
-
Rhodobaca bogoriensis DSM 18756
J9JE46
-
-
Rhodobacterales bacterium chep-kr
G3GIX2
-
-
Roseinatronobacter monicus
J7FAN3
-
-
Roseinatronobacter sp. khil
J7FBP5
-
-
Roseobacter sp.
G3GIW8
-
-
Roseobacter sp. B09
G3GIW8
-
-
Roseobacter sp. Zun_kholvo
J7FBD4
-
-
General Information
General Information
Commentary
Organism
metabolism
comparison of the presence of BchE and AcsF genes encoding oxygen-independent and oxygen-dependent magnesium-protoporphyrin IX monomethylester cyclase, EC 1.21.98.3 and EC 1.14.13.81, respectively, in Proteobacteria. All tested species of aerobic anoxygenic phototrophs contain acsF genes, but some of them also retain the bchE gene. In contrast to bchE phylogeny, the AcsF phylogeny is in good agreement with 16S inferred phylogeny. The AcsF gene occupies a conserved position inside the photosynthesis gene cluster, whereas the BchE location in the genome varies largely between the species
Citromicrobium sp. CV44
metabolism
comparison of the presence of BchE and AcsF genes encoding oxygen-independent and oxygen-dependent magnesium-protoporphyrin IX monomethylester cyclase, EC 1.21.98.3 and EC 1.14.13.81, respectively, in Proteobacteria. All tested species of aerobic anoxygenic phototrophs contain acsF genes, but some of them also retain the bchE gene. In contrast to bchE phylogeny, the AcsF phylogeny is in good agreement with 16S inferred phylogeny. The AcsF gene occupies a conserved position inside the photosynthesis gene cluster, whereas the BchE location in the genome varies largely between the species
Methylobacteriaceae bacterium RM11-8-1
metabolism
comparison of the presence of BchE and AcsF genes encoding oxygen-independent and oxygen-dependent magnesium-protoporphyrin IX monomethylester cyclase, EC 1.21.98.3 and EC 1.14.13.81, respectively, in Proteobacteria. All tested species of aerobic anoxygenic phototrophs contain acsF genes, but some of them also retain the bchE gene. In contrast to bchE phylogeny, the AcsF phylogeny is in good agreement with 16S inferred phylogeny. The AcsF gene occupies a conserved position inside the photosynthesis gene cluster, whereas the BchE location in the genome varies largely between the species
Rhodobaca bogoriensis
metabolism
comparison of the presence of BchE and AcsF genes encoding oxygen-independent and oxygen-dependent magnesium-protoporphyrin IX monomethylester cyclase, EC 1.21.98.3 and EC 1.14.13.81, respectively, in Proteobacteria. All tested species of aerobic anoxygenic phototrophs contain acsF genes, but some of them also retain the bchE gene. In contrast to bchE phylogeny, the AcsF phylogeny is in good agreement with 16S inferred phylogeny. The AcsF gene occupies a conserved position inside the photosynthesis gene cluster, whereas the BchE location in the genome varies largely between the species
Rhodobacterales bacterium chep-kr
metabolism
comparison of the presence of BchE and AcsF genes encoding oxygen-independent and oxygen-dependent magnesium-protoporphyrin IX monomethylester cyclase, EC 1.21.98.3 and EC 1.14.13.81, respectively, in Proteobacteria. All tested species of aerobic anoxygenic phototrophs contain acsF genes, but some of them also retain the bchE gene. In contrast to bchE phylogeny, the AcsF phylogeny is in good agreement with 16S inferred phylogeny. The AcsF gene occupies a conserved position inside the photosynthesis gene cluster, whereas the BchE location in the genome varies largely between the species
Roseinatronobacter monicus
metabolism
comparison of the presence of BchE and AcsF genes encoding oxygen-independent and oxygen-dependent magnesium-protoporphyrin IX monomethylester cyclase, EC 1.21.98.3 and EC 1.14.13.81, respectively, in Proteobacteria. All tested species of aerobic anoxygenic phototrophs contain acsF genes, but some of them also retain the bchE gene. In contrast to bchE phylogeny, the AcsF phylogeny is in good agreement with 16S inferred phylogeny. The AcsF gene occupies a conserved position inside the photosynthesis gene cluster, whereas the BchE location in the genome varies largely between the species
Roseinatronobacter sp. khil
metabolism
comparison of the presence of BchE and AcsF genes encoding oxygen-independent and oxygen-dependent magnesium-protoporphyrin IX monomethylester cyclase, EC 1.21.98.3 and EC 1.14.13.81, respectively, in Proteobacteria. All tested species of aerobic anoxygenic phototrophs contain acsF genes, but some of them also retain the bchE gene. In contrast to bchE phylogeny, the AcsF phylogeny is in good agreement with 16S inferred phylogeny. The AcsF gene occupies a conserved position inside the photosynthesis gene cluster, whereas the BchE location in the genome varies largely between the species
Roseobacter sp.
metabolism
comparison of the presence of BchE and AcsF genes encoding oxygen-independent and oxygen-dependent magnesium-protoporphyrin IX monomethylester cyclase, EC 1.21.98.3 and EC 1.14.13.81, respectively, in Proteobacteria. All tested species of aerobic anoxygenic phototrophs contain acsF genes, but some of them also retain the bchE gene. In contrast to bchE phylogeny, the AcsF phylogeny is in good agreement with 16S inferred phylogeny. The AcsF gene occupies a conserved position inside the photosynthesis gene cluster, whereas the BchE location in the genome varies largely between the species
Roseobacter sp. Zun_kholvo
General Information (protein specific)
General Information
Commentary
Organism
metabolism
comparison of the presence of BchE and AcsF genes encoding oxygen-independent and oxygen-dependent magnesium-protoporphyrin IX monomethylester cyclase, EC 1.21.98.3 and EC 1.14.13.81, respectively, in Proteobacteria. All tested species of aerobic anoxygenic phototrophs contain acsF genes, but some of them also retain the bchE gene. In contrast to bchE phylogeny, the AcsF phylogeny is in good agreement with 16S inferred phylogeny. The AcsF gene occupies a conserved position inside the photosynthesis gene cluster, whereas the BchE location in the genome varies largely between the species
Citromicrobium sp. CV44
metabolism
comparison of the presence of BchE and AcsF genes encoding oxygen-independent and oxygen-dependent magnesium-protoporphyrin IX monomethylester cyclase, EC 1.21.98.3 and EC 1.14.13.81, respectively, in Proteobacteria. All tested species of aerobic anoxygenic phototrophs contain acsF genes, but some of them also retain the bchE gene. In contrast to bchE phylogeny, the AcsF phylogeny is in good agreement with 16S inferred phylogeny. The AcsF gene occupies a conserved position inside the photosynthesis gene cluster, whereas the BchE location in the genome varies largely between the species
Methylobacteriaceae bacterium RM11-8-1
metabolism
comparison of the presence of BchE and AcsF genes encoding oxygen-independent and oxygen-dependent magnesium-protoporphyrin IX monomethylester cyclase, EC 1.21.98.3 and EC 1.14.13.81, respectively, in Proteobacteria. All tested species of aerobic anoxygenic phototrophs contain acsF genes, but some of them also retain the bchE gene. In contrast to bchE phylogeny, the AcsF phylogeny is in good agreement with 16S inferred phylogeny. The AcsF gene occupies a conserved position inside the photosynthesis gene cluster, whereas the BchE location in the genome varies largely between the species
Rhodobaca bogoriensis
metabolism
comparison of the presence of BchE and AcsF genes encoding oxygen-independent and oxygen-dependent magnesium-protoporphyrin IX monomethylester cyclase, EC 1.21.98.3 and EC 1.14.13.81, respectively, in Proteobacteria. All tested species of aerobic anoxygenic phototrophs contain acsF genes, but some of them also retain the bchE gene. In contrast to bchE phylogeny, the AcsF phylogeny is in good agreement with 16S inferred phylogeny. The AcsF gene occupies a conserved position inside the photosynthesis gene cluster, whereas the BchE location in the genome varies largely between the species
Rhodobacterales bacterium chep-kr
metabolism
comparison of the presence of BchE and AcsF genes encoding oxygen-independent and oxygen-dependent magnesium-protoporphyrin IX monomethylester cyclase, EC 1.21.98.3 and EC 1.14.13.81, respectively, in Proteobacteria. All tested species of aerobic anoxygenic phototrophs contain acsF genes, but some of them also retain the bchE gene. In contrast to bchE phylogeny, the AcsF phylogeny is in good agreement with 16S inferred phylogeny. The AcsF gene occupies a conserved position inside the photosynthesis gene cluster, whereas the BchE location in the genome varies largely between the species
Roseinatronobacter monicus
metabolism
comparison of the presence of BchE and AcsF genes encoding oxygen-independent and oxygen-dependent magnesium-protoporphyrin IX monomethylester cyclase, EC 1.21.98.3 and EC 1.14.13.81, respectively, in Proteobacteria. All tested species of aerobic anoxygenic phototrophs contain acsF genes, but some of them also retain the bchE gene. In contrast to bchE phylogeny, the AcsF phylogeny is in good agreement with 16S inferred phylogeny. The AcsF gene occupies a conserved position inside the photosynthesis gene cluster, whereas the BchE location in the genome varies largely between the species
Roseinatronobacter sp. khil
metabolism
comparison of the presence of BchE and AcsF genes encoding oxygen-independent and oxygen-dependent magnesium-protoporphyrin IX monomethylester cyclase, EC 1.21.98.3 and EC 1.14.13.81, respectively, in Proteobacteria. All tested species of aerobic anoxygenic phototrophs contain acsF genes, but some of them also retain the bchE gene. In contrast to bchE phylogeny, the AcsF phylogeny is in good agreement with 16S inferred phylogeny. The AcsF gene occupies a conserved position inside the photosynthesis gene cluster, whereas the BchE location in the genome varies largely between the species
Roseobacter sp.
metabolism
comparison of the presence of BchE and AcsF genes encoding oxygen-independent and oxygen-dependent magnesium-protoporphyrin IX monomethylester cyclase, EC 1.21.98.3 and EC 1.14.13.81, respectively, in Proteobacteria. All tested species of aerobic anoxygenic phototrophs contain acsF genes, but some of them also retain the bchE gene. In contrast to bchE phylogeny, the AcsF phylogeny is in good agreement with 16S inferred phylogeny. The AcsF gene occupies a conserved position inside the photosynthesis gene cluster, whereas the BchE location in the genome varies largely between the species
Roseobacter sp. Zun_kholvo
Other publictions for EC 1.21.98.3
No.
1st author
Pub Med
title
organims
journal
volume
pages
year
Activating Compound
Application
Cloned(Commentary)
Crystallization (Commentary)
Engineering
General Stability
Inhibitors
KM Value [mM]
Localization
Metals/Ions
Molecular Weight [Da]
Natural Substrates/ Products (Substrates)
Organic Solvent Stability
Organism
Oxidation Stability
Posttranslational Modification
Purification (Commentary)
Reaction
Renatured (Commentary)
Source Tissue
Specific Activity [micromol/min/mg]
Storage Stability
Substrates and Products (Substrate)
Subunits
Temperature Optimum [°C]
Temperature Range [°C]
Temperature Stability [°C]
Turnover Number [1/s]
pH Optimum
pH Range
pH Stability
Cofactor
Ki Value [mM]
pI Value
IC50 Value
Activating Compound (protein specific)
Application (protein specific)
Cloned(Commentary) (protein specific)
Cofactor (protein specific)
Crystallization (Commentary) (protein specific)
Engineering (protein specific)
General Stability (protein specific)
IC50 Value (protein specific)
Inhibitors (protein specific)
Ki Value [mM] (protein specific)
KM Value [mM] (protein specific)
Localization (protein specific)
Metals/Ions (protein specific)
Molecular Weight [Da] (protein specific)
Natural Substrates/ Products (Substrates) (protein specific)
Organic Solvent Stability (protein specific)
Oxidation Stability (protein specific)
Posttranslational Modification (protein specific)
Purification (Commentary) (protein specific)
Renatured (Commentary) (protein specific)
Source Tissue (protein specific)
Specific Activity [micromol/min/mg] (protein specific)
Storage Stability (protein specific)
Substrates and Products (Substrate) (protein specific)
Subunits (protein specific)
Temperature Optimum [°C] (protein specific)
Temperature Range [°C] (protein specific)
Temperature Stability [°C] (protein specific)
Turnover Number [1/s] (protein specific)
pH Optimum (protein specific)
pH Range (protein specific)
pH Stability (protein specific)
pI Value (protein specific)
Expression
General Information
General Information (protein specific)
Expression (protein specific)
KCat/KM [mM/s]
KCat/KM [mM/s] (protein specific)
737606
Yamanashi
Identification of the chlE gen ...
Cyanothece sp. PCC 7425, Cyanothece sp. PCC 7822
Biochem. Biophys. Res. Commun.
463
1328-1333
2015
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2
2
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744228
Yamanashi
Identification of the chlE ge ...
Cyanothece sp. PCC 7425, Cyanothece sp. PCC 7822, Rhodobacter capsulatus, Rhodobacter capsulatus SB1003
Biochem. Biophys. Res. Commun.
463
1328-1333
2015
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3
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1
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4
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9
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4
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4
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6
6
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726735
Boldareva-Nuianzina
Distribution and origin of oxy ...
Citromicrobium sp. CV44, Methylobacteriaceae bacterium RM11-8-1, Rhodobaca bogoriensis, Rhodobaca bogoriensis DSM 18756, Rhodobacterales bacterium chep-kr, Roseinatronobacter monicus, Roseinatronobacter sp. khil, Roseobacter sp., Roseobacter sp. B09, Roseobacter sp. Zun_kholvo
Appl. Environ. Microbiol.
79
2596-2604
2013
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8
8
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689645
Gough
A new method for isolating phy ...
Rhodobacter capsulatus, Rhodobacter capsulatus ATCC BAA-309
Plant Physiol. Biochem.
45
932-936
2007
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1
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738567
Ouchane
Aerobic and anaerobic Mg-proto ...
Rubrivivax gelatinosus
J. Biol. Chem.
279
6385-6394
2004
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1
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3
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1
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1
1
1
1
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739563
Gough
Anaerobic chlorophyll isocycli ...
Rhodobacter capsulatus, Rhodobacter capsulatus ATCC BAA-309
Proc. Natl. Acad. Sci. USA
97
6908-6913
2000
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4
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6
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1
1
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738495
Yang
Rhodobacter capsulatus genes i ...
Rhodobacter capsulatus, Rhodobacter capsulatus ATCC BAA-309
J. Bacteriol.
172
5001-5010
1990
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