Annotation and functional assignment of the genes for the C30 carotenoid pathways from the genomes of two bacteria Bacillus indicus and Bacillus firmus

Steiger, S.; Perez-Fons, L.; Cutting, S.M.; Fraser, P.D.; Sandmann, G.; Microbiology 161, 194-202 (2015)

Data extracted from this reference:

Natural Substrates

Organism

Commentary (Nat. Sub.)

Natural Products

Commentary (Nat. Pro.)

Organism (Nat. Pro.)

Reversibility

ID

4,4'-diapolycopen-4-al + H2O + acceptor

Metabacillus indicus

-

4,4'-diapolycopen-4-oate + reduced acceptor

-

-

?

4,4'-diapolycopen-4-al + H2O + acceptor

Cytobacillus firmus

-

4,4'-diapolycopen-4-oate + reduced acceptor

-

-

?

4,4'-diapolycopene-4,4'-dial + H2O + acceptor

Metabacillus indicus

-

4,4'-diapolycopene-4,4'-dioate + reduced acceptor

-

-

?

4,4'-diapolycopene-4,4'-dial + H2O + acceptor

Cytobacillus firmus

-

4,4'-diapolycopene-4,4'-dioate + reduced acceptor

-

-

?

Substrates

Commentary Substrates

Literature (Substrates)

Organism

Products

Commentary (Products)

Literature (Products)

Organism (Products)

Reversibility

Substrate Product ID

4,4'-diapolycopen-4-al + H2O + acceptor

-

745725

Metabacillus indicus

4,4'-diapolycopen-4-oate + reduced acceptor

-

-

-

?

4,4'-diapolycopen-4-al + H2O + acceptor

-

745725

Cytobacillus firmus

4,4'-diapolycopen-4-oate + reduced acceptor

-

-

-

?

4,4'-diapolycopene-4,4'-dial + H2O + acceptor

-

745725

Metabacillus indicus

4,4'-diapolycopene-4,4'-dioate + reduced acceptor

-

-

-

?

4,4'-diapolycopene-4,4'-dial + H2O + acceptor

-

745725

Cytobacillus firmus

4,4'-diapolycopene-4,4'-dioate + reduced acceptor

-

-

-

?

Natural Substrates

Organism

Commentary (Nat. Sub.)

Natural Products

Commentary (Nat. Pro.)

Organism (Nat. Pro.)

Reversibility

ID

4,4'-diapolycopen-4-al + H2O + acceptor

Metabacillus indicus

-

4,4'-diapolycopen-4-oate + reduced acceptor

-

-

?

4,4'-diapolycopen-4-al + H2O + acceptor

Cytobacillus firmus

-

4,4'-diapolycopen-4-oate + reduced acceptor

-

-

?

4,4'-diapolycopene-4,4'-dial + H2O + acceptor

Metabacillus indicus

-

4,4'-diapolycopene-4,4'-dioate + reduced acceptor

-

-

?

4,4'-diapolycopene-4,4'-dial + H2O + acceptor

Cytobacillus firmus

-

4,4'-diapolycopene-4,4'-dioate + reduced acceptor

-

-

?

Substrates

Commentary Substrates

Literature (Substrates)

Organism

Products

Commentary (Products)

Literature (Products)

Organism (Products)

Reversibility

ID

4,4'-diapolycopen-4-al + H2O + acceptor

-

745725

Metabacillus indicus

4,4'-diapolycopen-4-oate + reduced acceptor

-

-

-

?

4,4'-diapolycopen-4-al + H2O + acceptor

-

745725

Cytobacillus firmus

4,4'-diapolycopen-4-oate + reduced acceptor

-

-

-

?

4,4'-diapolycopene-4,4'-dial + H2O + acceptor

-

745725

Metabacillus indicus

4,4'-diapolycopene-4,4'-dioate + reduced acceptor

-

-

-

?

4,4'-diapolycopene-4,4'-dial + H2O + acceptor

-

745725

Cytobacillus firmus

4,4'-diapolycopene-4,4'-dioate + reduced acceptor

-

-

-

?

No.

1st author

Pub Med

title

organims

journal

volume

pages

year

Activating Compound

Application

Cloned(Commentary)

Crystallization (Commentary)

Engineering

General Stability

Inhibitors

KM Value [mM]

Localization

Metals/Ions

Molecular Weight [Da]

Natural Substrates/ Products (Substrates)

Organic Solvent Stability

Organism

Oxidation Stability

Posttranslational Modification

Purification (Commentary)

Reaction

Renatured (Commentary)

Source Tissue

Specific Activity [micromol/min/mg]

Storage Stability

Substrates and Products (Substrate)

Subunits

Synonyms

Temperature Optimum [°C]

Temperature Range [°C]

Temperature Stability [°C]

Turnover Number [1/s]

pH Optimum

pH Range

pH Stability

Cofactor

Ki Value [mM]

pI Value

IC50 Value

Activating Compound (protein specific)

Application (protein specific)

Cloned(Commentary) (protein specific)

Cofactor (protein specific)

Crystallization (Commentary) (protein specific)

Engineering (protein specific)

General Stability (protein specific)

IC50 Value (protein specific)

Inhibitors (protein specific)

Ki Value [mM] (protein specific)

KM Value [mM] (protein specific)

Localization (protein specific)

Metals/Ions (protein specific)

Molecular Weight [Da] (protein specific)

Natural Substrates/ Products (Substrates) (protein specific)

Organic Solvent Stability (protein specific)

Oxidation Stability (protein specific)

Posttranslational Modification (protein specific)

Purification (Commentary) (protein specific)

Renatured (Commentary) (protein specific)

Source Tissue (protein specific)

Specific Activity [micromol/min/mg] (protein specific)

Storage Stability (protein specific)

Substrates and Products (Substrate) (protein specific)

Subunits (protein specific)

Temperature Optimum [°C] (protein specific)

Temperature Range [°C] (protein specific)

Temperature Stability [°C] (protein specific)

Turnover Number [1/s] (protein specific)

pH Optimum (protein specific)

pH Range (protein specific)

pH Stability (protein specific)

pI Value (protein specific)

Expression

General Information

General Information (protein specific)

Expression (protein specific)

KCat/KM [mM/s]

KCat/KM [mM/s] (protein specific)

745725

Steiger

Annotation and functional ass ...

Metabacillus indicus, Cytobacillus firmus

Microbiology

161

194-202

2015

-

-

2

-

-

-

-

-

-

-

-

4

-

7

-

-

-

-

-

-

-

-

4

-

4

-

-

-

-

-

-

-

-

-

-

-

-

-

2

-

-

-

-

-

-

-

-

-

-

-

4

-

-

-

-

-

-

-

-

4

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

713818

Tao

Novel carotenoid oxidase invol ...

Methylomonas sp.

Appl. Environ. Microbiol.

71

3294-3301

2005

-

-

-

-

-

-

-

-

-

-

-

-

-

1

-

-

-

-

-

-

-

-

1

-

1

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

1

-

-

-

-

-

-

-

-

-

-

1

1

-

-

-

744091

Tao

Novel carotenoid oxidase invo ...

Methylomonas sp. 16a

Appl. Environ. Microbiol.

71

3294-3301

2005

-

-

1

-

-

-

-

-

-

-

-

-

-

1

-

-

-

-

-

-

-

-

3

-

2

-

-

-

-

-

-

-

-

-

-

-

-

-

1

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

3

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-