KM Value [mM] | KM Value Maximum [mM] | Substrate | Comment | Organism | Structure |
---|---|---|---|---|---|
0.071 | - |
2-oxoglutarate | pH 7.5, 37°C | Rhodothermus marinus | |
0.075 | - |
[50S ribosomal cyclic peptide 6KKPAEVRMGKGKG88-linker]-L-Arg82 | pH 7.5, 37°C | Rhodothermus marinus | |
0.1 | - |
O2 | pH 7.5, 37°C | Rhodothermus marinus | |
0.208 | - |
[50S ribosomal peptide KPVTKKPAEVRMGKGKGSVE-NH2]-L-Arg | pH 7.5, 37°C | Rhodothermus marinus |
Metals/Ions | Comment | Organism | Structure |
---|---|---|---|
Iron | Fe(II)-coordinating triad consists of H133, D135, H196. Km value at 37°C is 0.0146 mM | Rhodothermus marinus |
Organism | UniProt | Comment | Textmining |
---|---|---|---|
Rhodothermus marinus | - |
- |
- |
Rhodothermus marinus DSM 4252 | - |
- |
- |
Substrates | Comment Substrates | Organism | Products | Comment (Products) | Rev. | Reac. |
---|---|---|---|---|---|---|
additional information | enzyme displays a temperature-dependent variation in uL16 hydroxylation. Dioxygen availability can be a limiting factor for ycfD catalysis at high temperatures, consistent with incomplete uL16 hydroxylation observed | Rhodothermus marinus | ? | - |
- |
|
additional information | enzyme displays a temperature-dependent variation in uL16 hydroxylation. Dioxygen availability can be a limiting factor for ycfD catalysis at high temperatures, consistent with incomplete uL16 hydroxylation observed | Rhodothermus marinus DSM 4252 | ? | - |
- |
|
[50S ribosomal cyclic peptide 6KKPAEVRMGKGKG88-linker]-L-Arg82 + 2-oxoglutarate + O2 | - |
Rhodothermus marinus | [50S ribosomal cyclic peptide 6KKPAEVRMGKGKG88-linker]-(3R)-3-hydroxy-L-Arg82 + succinate + CO2 | - |
? | |
[50S ribosomal cyclic peptide 6KKPAEVRMGKGKG88-linker]-L-Arg82 + 2-oxoglutarate + O2 | - |
Rhodothermus marinus DSM 4252 | [50S ribosomal cyclic peptide 6KKPAEVRMGKGKG88-linker]-(3R)-3-hydroxy-L-Arg82 + succinate + CO2 | - |
? | |
[50S ribosomal peptide KPVTKKPAEVRMGKGKGSVE-NH2]-L-Arg + 2-oxoglutarate + O2 | - |
Rhodothermus marinus | [50S ribosomal peptide KPVTKKPAEVRMGKGKGSVE-NH2]-(3R)-3-hydroxy-L-Arg + succinate + CO2 | - |
? | |
[50S ribosomal peptide KPVTKKPAEVRMGKGKGSVE-NH2]-L-Arg + 2-oxoglutarate + O2 | - |
Rhodothermus marinus DSM 4252 | [50S ribosomal peptide KPVTKKPAEVRMGKGKGSVE-NH2]-(3R)-3-hydroxy-L-Arg + succinate + CO2 | - |
? | |
[50S ribosomal protein L16]-L-Arg82 + 2-oxoglutarate + O2 | - |
Rhodothermus marinus | [50S ribosomal protein L16]-(3R)-3-hydroxy-L-Arg82 + succinate + CO2 | - |
? | |
[50S ribosomal protein L16]-L-Arg82 + 2-oxoglutarate + O2 | - |
Rhodothermus marinus DSM 4252 | [50S ribosomal protein L16]-(3R)-3-hydroxy-L-Arg82 + succinate + CO2 | - |
? |
Synonyms | Comment | Organism |
---|---|---|
ycfD | - |
Rhodothermus marinus |
Temperature Optimum [°C] | Temperature Optimum Maximum [°C] | Comment | Organism |
---|---|---|---|
55 | - |
- |
Rhodothermus marinus |
Temperature Stability Minimum [°C] | Temperature Stability Maximum [°C] | Comment | Organism |
---|---|---|---|
84 | - |
melting temperature | Rhodothermus marinus |
Turnover Number Minimum [1/s] | Turnover Number Maximum [1/s] | Substrate | Comment | Organism | Structure |
---|---|---|---|---|---|
0.47 | - |
[50S ribosomal cyclic peptide 6KKPAEVRMGKGKG88-linker]-L-Arg82 | pH 7.5, 37°C | Rhodothermus marinus | |
0.5 | - |
[50S ribosomal peptide KPVTKKPAEVRMGKGKGSVE-NH2]-L-Arg | pH 7.5, 37°C | Rhodothermus marinus |