BRENDA - Enzyme Database show
show all sequences of 1.13.11.55

Acidithiobacillus caldus sulfur oxidation model based on transcriptome analysis between the wild type and sulfur oxygenase reductase defective mutant

Chen, L.; Ren, Y.; Lin, J.; Liu, X.; Pang, X.; Lin, J.; PLoS ONE 7, e39470 (2012)

Data extracted from this reference:

Application
Application
Commentary
Organism
industry
Acidithiobacillus caldus is widely used in bio-leaching. It gains energy and electrons from oxidation of elemental sulfur and reduced inorganic sulfur compounds (RISCs) for carbon dioxide fixation and growth. Its sulfur oxidation system involves a truncated sulfur oxidation (Sox) system (omitting SoxCD), nonSox sulfur oxidation system similar to the sulfur oxidation in A. ferrooxidans, and sulfur oxygenase reductase (SOR)
Acidithiobacillus caldus
Cloned(Commentary)
Commentary
Organism
gene sor, expression anaysis
Acidithiobacillus caldus
Engineering
Amino acid exchange
Commentary
Organism
additional information
generation of an enzyme mutant lacking the sulfur oxygenase reductase gene sor, comparative transcriptome analysis, microarrays and real-time quantitative PCR, of the wild-type and the DELTAsor mutant, growth analysis on sulfur or K2S4O6 as the sole substrates reveals that the mutant has an obvious growth advantage compared to the wild-type strain and its maximum cell concentration is 70% higher than the wild-type, overview
Acidithiobacillus caldus
Localization
Localization
Commentary
Organism
GeneOntology No.
Textmining
cytoplasm
-
Acidithiobacillus caldus
5737
-
Natural Substrates/ Products (Substrates)
Natural Substrates
Organism
Commentary (Nat. Sub.)
Natural Products
Commentary (Nat. Pro.)
Organism (Nat. Pro.)
Reversibility
4 sulfur + 4 H2O + O2
Acidithiobacillus caldus
-
2 hydrogen sulfide + 2 bisulfite + 2 H+
-
-
?
4 sulfur + 4 H2O + O2
Acidithiobacillus caldus MTH-04
-
2 hydrogen sulfide + 2 bisulfite + 2 H+
-
-
?
Organism
Organism
Primary Accession No. (UniProt)
Commentary
Textmining
Acidithiobacillus caldus
-
gene sor
-
Acidithiobacillus caldus MTH-04
-
gene sor
-
Substrates and Products (Substrate)
Substrates
Commentary Substrates
Literature (Substrates)
Organism
Products
Commentary (Products)
Literature (Products)
Organism (Products)
Reversibility
4 sulfur + 4 H2O + O2
-
726299
Acidithiobacillus caldus
2 hydrogen sulfide + 2 bisulfite + 2 H+
-
-
-
?
4 sulfur + 4 H2O + O2
-
726299
Acidithiobacillus caldus MTH-04
2 hydrogen sulfide + 2 bisulfite + 2 H+
-
-
-
?
Application (protein specific)
Application
Commentary
Organism
industry
Acidithiobacillus caldus is widely used in bio-leaching. It gains energy and electrons from oxidation of elemental sulfur and reduced inorganic sulfur compounds (RISCs) for carbon dioxide fixation and growth. Its sulfur oxidation system involves a truncated sulfur oxidation (Sox) system (omitting SoxCD), nonSox sulfur oxidation system similar to the sulfur oxidation in A. ferrooxidans, and sulfur oxygenase reductase (SOR)
Acidithiobacillus caldus
Cloned(Commentary) (protein specific)
Commentary
Organism
gene sor, expression anaysis
Acidithiobacillus caldus
Engineering (protein specific)
Amino acid exchange
Commentary
Organism
additional information
generation of an enzyme mutant lacking the sulfur oxygenase reductase gene sor, comparative transcriptome analysis, microarrays and real-time quantitative PCR, of the wild-type and the DELTAsor mutant, growth analysis on sulfur or K2S4O6 as the sole substrates reveals that the mutant has an obvious growth advantage compared to the wild-type strain and its maximum cell concentration is 70% higher than the wild-type, overview
Acidithiobacillus caldus
Localization (protein specific)
Localization
Commentary
Organism
GeneOntology No.
Textmining
cytoplasm
-
Acidithiobacillus caldus
5737
-
Natural Substrates/ Products (Substrates) (protein specific)
Natural Substrates
Organism
Commentary (Nat. Sub.)
Natural Products
Commentary (Nat. Pro.)
Organism (Nat. Pro.)
Reversibility
4 sulfur + 4 H2O + O2
Acidithiobacillus caldus
-
2 hydrogen sulfide + 2 bisulfite + 2 H+
-
-
?
4 sulfur + 4 H2O + O2
Acidithiobacillus caldus MTH-04
-
2 hydrogen sulfide + 2 bisulfite + 2 H+
-
-
?
Substrates and Products (Substrate) (protein specific)
Substrates
Commentary Substrates
Literature (Substrates)
Organism
Products
Commentary (Products)
Literature (Products)
Organism (Products)
Reversibility
4 sulfur + 4 H2O + O2
-
726299
Acidithiobacillus caldus
2 hydrogen sulfide + 2 bisulfite + 2 H+
-
-
-
?
4 sulfur + 4 H2O + O2
-
726299
Acidithiobacillus caldus MTH-04
2 hydrogen sulfide + 2 bisulfite + 2 H+
-
-
-
?
General Information
General Information
Commentary
Organism
additional information
modeling of the sulfur oxidation system in Acidithiobacillus caldus , overview
Acidithiobacillus caldus
physiological function
the enzyme oxidizes the cytoplasmic elemental sulfur, but cannot couple the sulfur oxidation with the electron transfer chain or substrate-level phosphorylation
Acidithiobacillus caldus
General Information (protein specific)
General Information
Commentary
Organism
additional information
modeling of the sulfur oxidation system in Acidithiobacillus caldus , overview
Acidithiobacillus caldus
physiological function
the enzyme oxidizes the cytoplasmic elemental sulfur, but cannot couple the sulfur oxidation with the electron transfer chain or substrate-level phosphorylation
Acidithiobacillus caldus
Other publictions for EC 1.13.11.55
No.
1st author
Pub Med
title
organims
journal
volume
pages
year
Activating Compound
Application
Cloned(Commentary)
Crystallization (Commentary)
Engineering
General Stability
Inhibitors
KM Value [mM]
Localization
Metals/Ions
Molecular Weight [Da]
Natural Substrates/ Products (Substrates)
Organic Solvent Stability
Organism
Oxidation Stability
Posttranslational Modification
Purification (Commentary)
Reaction
Renatured (Commentary)
Source Tissue
Specific Activity [micromol/min/mg]
Storage Stability
Substrates and Products (Substrate)
Subunits
Temperature Optimum [°C]
Temperature Range [°C]
Temperature Stability [°C]
Turnover Number [1/s]
pH Optimum
pH Range
pH Stability
Cofactor
Ki Value [mM]
pI Value
IC50 Value
Activating Compound (protein specific)
Application (protein specific)
Cloned(Commentary) (protein specific)
Cofactor (protein specific)
Crystallization (Commentary) (protein specific)
Engineering (protein specific)
General Stability (protein specific)
IC50 Value (protein specific)
Inhibitors (protein specific)
Ki Value [mM] (protein specific)
KM Value [mM] (protein specific)
Localization (protein specific)
Metals/Ions (protein specific)
Molecular Weight [Da] (protein specific)
Natural Substrates/ Products (Substrates) (protein specific)
Organic Solvent Stability (protein specific)
Oxidation Stability (protein specific)
Posttranslational Modification (protein specific)
Purification (Commentary) (protein specific)
Renatured (Commentary) (protein specific)
Source Tissue (protein specific)
Specific Activity [micromol/min/mg] (protein specific)
Storage Stability (protein specific)
Substrates and Products (Substrate) (protein specific)
Subunits (protein specific)
Temperature Optimum [°C] (protein specific)
Temperature Range [°C] (protein specific)
Temperature Stability [°C] (protein specific)
Turnover Number [1/s] (protein specific)
pH Optimum (protein specific)
pH Range (protein specific)
pH Stability (protein specific)
pI Value (protein specific)
Expression
General Information
General Information (protein specific)
Expression (protein specific)
KCat/KM [mM/s]
KCat/KM [mM/s] (protein specific)
742795
Ruehl
A sulfur oxygenase from the h ...
Aquifex aeolicus, Thioalkalivibrio paradoxus, Thioalkalivibrio paradoxus Arh 1
J. Bacteriol.
199
e00675
2017
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742580
Guo
Sulfur metabolism pathways in ...
Sulfobacillus acidophilus, Sulfobacillus acidophilus TPY
Front. Microbiol.
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1861
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743261
Janosch
Sulfur oxygenase reductase (S ...
no activity in Acidithiobacillus caldus, Sulfobacillus thermosulfidooxidans, Sulfobacillus thermosulfidooxidans DSM 9293
Microorganisms
3
707-724
2015
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742198
Yin
Whole-genome sequencing revea ...
Acidithiobacillus thiooxidans, Acidithiobacillus thiooxidans A01
BMC Microbiol.
14
179
2014
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1
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725890
Zhang
Site-specific mutagenesis and ...
Sulfobacillus acidophilus, Sulfobacillus acidophilus TPY
Microbiol. Res.
168
654-660
2013
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724777
You
-
Structural basis for the therm ...
Acidianus tengchongensis, Acidithiobacillus sp. SM-1, Sulfurisphaera tokodaii
Chin. J. Chem. Engin.
20
52-61
2012
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3
-
3
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725278
Veith
The sulfur oxygenase reductase ...
Halothiobacillus neapolitanus, Halothiobacillus neapolitanus DSM 15147
J. Bacteriol.
194
677-685
2012
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2
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726299
Chen
Acidithiobacillus caldus sulfu ...
Acidithiobacillus caldus, Acidithiobacillus caldus MTH-04
PLoS ONE
7
e39470
2012
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725074
Veith
Substrate pathways and mechani ...
Acidianus ambivalens
Front. Microbiol.
2
37
2011
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16
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697350
Chen
-
Site-directed mutagenesis reve ...
Acidianus tengchongensis
Chin. Sci. Bull.
54
652-657
2009
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684915
Li
Crystal structure studies on s ...
Acidianus tengchongensis
Biochem. Biophys. Res. Commun.
369
919-923
2008
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686624
Pelletier
First characterisation of the ...
Aquifex aeolicus
Extremophiles
12
205-215
2008
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723994
Albers
Production of recombinant and ...
Acidianus ambivalens
Appl. Environ. Microbiol.
72
102-111
2006
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726486
Urich
X-ray structure of a self-comp ...
Acidianus ambivalens
Science
311
996-1000
2006
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663712
Chen
Key role of cysteine residues ...
Acidianus tengchongensis, Acidianus tengchongensis S5
Appl. Environ. Microbiol.
71
621-628
2005
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664199
Urich
The sulfur oxygenase reductase ...
Acidianus ambivalens, Acidianus ambivalens 5737
Biochim. Biophys. Acta
1747
267-270
2005
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664994
Urich
Identification of core active ...
Acidianus ambivalens
FEMS Microbiol. Lett.
248
171-176
2005
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724213
Urich
The sulphur oxygenase reductas ...
Acidianus ambivalens, Acidianus ambivalens DSM 3772
Biochem. J.
381
137-146
2004
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658665
Sun
Purification and properties of ...
Acidianus sp., Acidianus sp. S5
Extremophiles
7
131-134
2003
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439600
He
Cloning and heterologous expre ...
Acidianus sp. S5, Acidianus tengchongensis
FEMS Microbiol. Lett.
193
217-221
2000
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666952
Kletzin
-
Sulfur oxidation and reduction ...
Acidianus ambivalens
Syst. Appl. Microbiol.
16
534-543
1994
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1
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2
1
1
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1
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Acidianus ambivalens
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1
1
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Acidianus ambivalens, Acidianus ambivalens DSM 3772
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1989
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7
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7
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