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Literature summary for 1.1.1.421 extracted from

  • Carter, M.; Zhang, X.; Huang, H.; Bouvier, J.; Francisco, B.; Vetting, M.; Al-Obaidi, N.; Bonanno, J.; Ghosh, A.; Zallot, R.; Andersen, H.; Almo, S.; Gerlt, J.
    Functional assignment of multiple catabolic pathways for D-apiose article (2018), Nat. Chem. Biol., 14, 696-705 .
    View publication on PubMedView publication on EuropePMC

Cloned(Commentary)

Cloned (Comment) Organism
expressed in Escherichia coli BL21(DE3) cells Agrobacterium tumefaciens
expressed in Escherichia coli BL21(DE3) cells Blautia hydrogenotrophica
expressed in Escherichia coli BL21(DE3) cells Cupriavidus necator
expressed in Escherichia coli BL21(DE3) cells Pectobacterium atrosepticum

Natural Substrates/ Products (Substrates)

Natural Substrates Organism Comment (Nat. Sub.) Natural Products Comment (Nat. Pro.) Rev. Reac.
D-apionate + NAD+ Agrobacterium tumefaciens
-
3-oxo-D-isoapionate + NADH + H+
-
r
D-apionate + NAD+ Blautia hydrogenotrophica
-
3-oxo-D-isoapionate + NADH + H+
-
r
D-apionate + NAD+ Cupriavidus necator
-
3-oxo-D-isoapionate + NADH + H+
-
r
D-apionate + NAD+ Pectobacterium atrosepticum
-
3-oxo-D-isoapionate + NADH + H+
-
r
D-apionate + NAD+ Agrobacterium tumefaciens K84
-
3-oxo-D-isoapionate + NADH + H+
-
r
D-apionate + NAD+ Cupriavidus necator ATCC 43291
-
3-oxo-D-isoapionate + NADH + H+
-
r
D-apionate + NAD+ Blautia hydrogenotrophica DSM 10507
-
3-oxo-D-isoapionate + NADH + H+
-
r
D-apionate + NAD+ Pectobacterium atrosepticum SCRI 1043
-
3-oxo-D-isoapionate + NADH + H+
-
r

Organism

Organism UniProt Comment Textmining
Agrobacterium tumefaciens B9JK75
-
-
Agrobacterium tumefaciens K84 B9JK75
-
-
Blautia hydrogenotrophica C0CMQ7
-
-
Blautia hydrogenotrophica DSM 10507 C0CMQ7
-
-
Cupriavidus necator F8GV06
-
-
Cupriavidus necator ATCC 43291 F8GV06
-
-
Pectobacterium atrosepticum Q6D8V3
-
-
Pectobacterium atrosepticum SCRI 1043 Q6D8V3
-
-

Purification (Commentary)

Purification (Comment) Organism
Ni-NTA resin column chromatography Agrobacterium tumefaciens
Ni-NTA resin column chromatography Blautia hydrogenotrophica
Ni-NTA resin column chromatography Cupriavidus necator
Ni-NTA resin column chromatography Pectobacterium atrosepticum

Substrates and Products (Substrate)

Substrates Comment Substrates Organism Products Comment (Products) Rev. Reac.
D-apionate + NAD+
-
Agrobacterium tumefaciens 3-oxo-D-isoapionate + NADH + H+
-
r
D-apionate + NAD+
-
Blautia hydrogenotrophica 3-oxo-D-isoapionate + NADH + H+
-
r
D-apionate + NAD+
-
Cupriavidus necator 3-oxo-D-isoapionate + NADH + H+
-
r
D-apionate + NAD+
-
Pectobacterium atrosepticum 3-oxo-D-isoapionate + NADH + H+
-
r
D-apionate + NAD+
-
Agrobacterium tumefaciens K84 3-oxo-D-isoapionate + NADH + H+
-
r
D-apionate + NAD+
-
Cupriavidus necator ATCC 43291 3-oxo-D-isoapionate + NADH + H+
-
r
D-apionate + NAD+
-
Blautia hydrogenotrophica DSM 10507 3-oxo-D-isoapionate + NADH + H+
-
r
D-apionate + NAD+
-
Pectobacterium atrosepticum SCRI 1043 3-oxo-D-isoapionate + NADH + H+
-
r

Cofactor

Cofactor Comment Organism Structure
NAD+
-
Agrobacterium tumefaciens
NAD+
-
Blautia hydrogenotrophica
NAD+
-
Cupriavidus necator
NAD+
-
Pectobacterium atrosepticum
NADH
-
Agrobacterium tumefaciens
NADH
-
Blautia hydrogenotrophica
NADH
-
Cupriavidus necator
NADH
-
Pectobacterium atrosepticum