Reference on EC 5.3.1.14 - L-rhamnose isomerase

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REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Noltmann, E.A.
Aldose-ketose isomerases
The Enzymes, 3rd Ed. (Boyer, P. D. , ed. )
6
271-354
1972
Escherichia coli, Escherichia coli B / ATCC 11303, Klebsiella aerogenes, Lactobacillus plantarum, Yersinia pestis
-
Manually annotated by BRENDA team
Domagk, G.F.; Zech, R.
Ueber den Abbau der Desoxyzucker durch Bacterienenzyme. I. L-Rhamnose-isomerase aus Lactobacillus plantarum
Biochem. Z.
339
145-153
1963
Lactobacillus plantarum
-
Manually annotated by BRENDA team
Domagk, G.F.; Zech, R.
L-Rhamnose isomerase
Methods Enzymol.
9
579-582
1966
Escherichia coli, Lactobacillus plantarum, Yersinia pestis
-
Manually annotated by BRENDA team
Izumori, K.; Mitchell, M.; Elbein, A.D.
Evidence that the isomerization of D-ribose and L-rhamnose is catalyzed by the same enzyme in Mycobacterium smegmatis
J. Bacteriol.
126
553-555
1976
Mycolicibacterium smegmatis
Manually annotated by BRENDA team
Levinson, S.L.; Krulwich, T.A.
Metabolism of L-rhamnose in Arthrobacter pyridinolis
J. Gen. Microbiol.
95
277-286
1976
Arthrobacter pyridinolis
Manually annotated by BRENDA team
Akhy, M.T.; Brown, C.M.; Old, D.C.
L-Rhamnose utilization in Salmonella typhimurium
J. Appl. Bacteriol.
56
269-274
1984
Salmonella enterica subsp. enterica serovar Typhimurium
Manually annotated by BRENDA team
Bhuiyan, S.H.; Itami, Y.; Izumori, K.
Immobilization of L-rhamnose isomerase and its application in L-mannose production from L-fructose
J. Ferment. Bioeng.
84
558-562
1997
Pseudomonas sp., Pseudomonas sp. LL172
-
Manually annotated by BRENDA team
Bhuiyan, S.H.; Itami, Y.; Izumori, K.
Isolation of an L-rhamnose isomerase-constitutive mutant of Pseudomonas sp. strain LL172: purification and characterization of the enzyme
J. Ferment. Bioeng.
84
319-323
1997
Pseudomonas sp., Pseudomonas sp. LL172
-
Manually annotated by BRENDA team
Bhuiyan, S.H.; Itami, Y.; Rokui, Y.; Katayama, T.; Izumori, K.
D-Allose production from D-psicose using immobilized D-rhamnose isomerase
J. Ferment. Bioeng.
85
539-541
1998
Pseudomonas sp., Pseudomonas sp. LL172
-
Manually annotated by BRENDA team
Garcia-Junceda, E.; Shen, G.J.; Alajarin, R.; Wong, C.H.
Cloning and overexpression of rhamnose isomerase and fucose isomerase
Bioorg. Med. Chem.
3
1349-1355
1995
Escherichia coli
Manually annotated by BRENDA team
Badia, J.; Baldoma, L.; Aguilar, J.; Boronat, A.
Identification of the rhaA, rhaB and rhaD gene products from Escherichia coli K-12
FEMS Microbiol. Lett.
65
253-258
1989
Escherichia coli
Manually annotated by BRENDA team
Badia, J.; Gimenez, R.; Baldoma, L.; Barnes, E.; Fessner, W.D.; Aguilar, J.
L-Lyxose metabolism employs the L-rhamnose pathway in mutant cells of Escherichia coli adapted to grow on L-lyxose
J. Bacteriol.
173
5144-5150
1991
Escherichia coli
Manually annotated by BRENDA team
Korndörfer, I.P.; Fessner, W.D.; Matthews, B.W.
The structure of rhamnose isomerase from Escherichia coli and its relation with xylose isomerase illustrates a change between inter and intra-subunit complementation during evolution
J. Mol. Biol.
300
917-933
2000
Escherichia coli, Escherichia coli (P32170)
Manually annotated by BRENDA team
Leang, K.; Takada, G.; Ishimura, A.; Okita, M.; Izumori, K.
Cloning, nucleotide sequence, and overexpression of the L-rhamnose isomerase gene from Pseudomonas stutzeri in Escherichia coli
Appl. Environ. Microbiol.
70
3298-3304
2004
Pseudomonas stutzeri, Pseudomonas stutzeri (Q75WH8)
Manually annotated by BRENDA team
Leang, K.; Takada, G.; Fukai, Y.; Morimoto, K.; Granstrom, T.B.; Izumori, K.
Novel reactions of L-rhamnose isomerase from Pseudomonas stutzeri and its relation with D-xylose isomerase via substrate specificity
Biochim. Biophys. Acta
1674
68-77
2004
Pseudomonas stutzeri
Manually annotated by BRENDA team
Granstroem, T.B.; Takata, G.; Morimoto, K.; Leisola, M.; Izumori, K.
L-Xylose and L-lyxose production from xylitol using Alcaligenes 701B strain and immobilized L-rhamnose isomerase enzyme
Enzyme Microb. Technol.
36
976-981
2005
Pseudomonas stutzeri
-
Manually annotated by BRENDA team
Yoshida, H.; Wayoon, P.; Takada, G.; Izumori, K.; Kamitori, S.
Crystallization and preliminary X-ray diffraction studies of L-rhamnose isomerase from Pseudomonas stutzeri
Acta Crystallogr. Sect. F
62
550-552
2006
Pseudomonas stutzeri, Pseudomonas stutzeri (Q75WH8)
Manually annotated by BRENDA team
Poonperm, W.; Takata, G.; Okada, H.; Morimoto, K.; Granstroem, T.B.; Izumori, K.
Cloning, sequencing, overexpression and characterization of L-rhamnose isomerase from Bacillus pallidus Y25 for rare sugar production
Appl. Microbiol. Biotechnol.
76
1297-1307
2007
Aeribacillus pallidus (A8CEF6)
Manually annotated by BRENDA team
Menavuvu, B.T.; Poonperm, W.; Leang, K.; Noguchi, N.; Okada, H.; Morimoto, K.; Granstroem, T.B.; Takada, G.; Izumori, K.
Efficient biosynthesis of D-allose from D-psicose by cross-linked recombinant L-rhamnose isomerase: separation of product by ethanol crystallization
J. Biosci. Bioeng.
101
340-345
2006
Pseudomonas stutzeri
Manually annotated by BRENDA team
Yoshida, H.; Yamada, M.; Ohyama, Y.; Takada, G.; Izumori, K.; Kamitori, S.
The structures of L-rhamnose isomerase from Pseudomonas stutzeri in complexes with L-rhamnose and D-allose provide insights into broad substrate specificity
J. Mol. Biol.
365
1505-1516
2007
Pseudomonas stutzeri
Manually annotated by BRENDA team
Yoshida, H.; Yamaji, M.; Ishii, T.; Izumori, K.; Kamitori, S.
Catalytic reaction mechanism of Pseudomonas stutzeri L-rhamnose isomerase deduced from X-ray structures
FEBS J.
277
1045-1057
2010
Pseudomonas stutzeri, Pseudomonas stutzeri (Q75WH8)
Manually annotated by BRENDA team
Wu, R.; Xie, H.; Mo, Y.; Cao, Z.
Broad substrate specificity and catalytic mechanism of Pseudomonas stutzeri L-rhamnose isomerase: insights from QM/MM molecular dynamics simulations
J. Phys. Chem. A
113
11595-11603
2009
Pseudomonas stutzeri, Pseudomonas stutzeri (Q75WH8)
Manually annotated by BRENDA team
Doan, T.N.; Prabhu, P.; Kim, J.K.; Ahn, Y.J.; Natarajan, S.; Kang, L.W.; Park, G.T.; Lim, S.B.; Lee, J.K.
Crystallization and preliminary X-ray crystallographic analysis of L-rhamnose isomerase with a novel high thermostability from Bacillus halodurans
Acta Crystallogr. Sect. F
66
677-680
2010
Bacillus halodurans, Bacillus halodurans ATCC BAA-125
Manually annotated by BRENDA team
Prabhu, P.; Doan, T.T.; Jeya, M.; Kang, L.W.; Lee, J.K.
Cloning and characterization of a rhamnose isomerase from Bacillus halodurans
Appl. Microbiol. Biotechnol.
89
635-644
2011
Bacillus halodurans, Bacillus halodurans ATCC BAA-125
Manually annotated by BRENDA team
Takata, G.; Uechi, K.; Taniguchi, E.; Kanbara, Y.; Yoshihara, A.; Morimoto, K.; Izumori, K.
Characterization of Mesorhizobium loti L-rhamnose isomerase and its application to L-talose production
Biosci. Biotechnol. Biochem.
75
1006-1009
2011
Mesorhizobium loti, Mesorhizobium loti Tono
Manually annotated by BRENDA team
Park, C.S.; Yeom, S.J.; Lim, Y.R.; Kim, Y.S.; Oh, D.K.
Characterization of a recombinant thermostable L-rhamnose isomerase from Thermotoga maritima ATCC 43589 and its application in the production of L-lyxose and L-mannose
Biotechnol. Lett.
32
1947-1953
2010
Thermotoga maritima, Thermotoga maritima ATCC 43589
Manually annotated by BRENDA team
Lin, C.J.; Tseng, W.C.; Lin, T.H.; Liu, S.M.; Tzou, W.S.; Fang, T.Y.
Characterization of a thermophilic L-rhamnose isomerase from Thermoanaerobacterium saccharolyticum NTOU1
J. Agric. Food Chem.
58
10431-10436
2010
Thermoanaerobacterium saccharolyticum (D5LNE5), Thermoanaerobacterium saccharolyticum, Thermoanaerobacterium saccharolyticum NTOU1 (D5LNE5), Thermoanaerobacterium saccharolyticum NTOU1
Manually annotated by BRENDA team
Yoshida, H.; Takeda, K.; Izumori, K.; Kamitori, S.
Elucidation of the role of Ser329 and the C-terminal region in the catalytic activity of Pseudomonas stutzeri L-rhamnose isomerase
Protein Eng. Des. Sel.
23
919-927
2010
Pseudomonas stutzeri, Pseudomonas stutzeri (Q75WH8)
Manually annotated by BRENDA team
Kim, Y.S.; Shin, K.C.; Lim, Y.R.; Oh, D.K.
Characterization of a recombinant L-rhamnose isomerase from Dictyoglomus turgidum and its application for L-rhamnulose production
Biotechnol. Lett.
35
259-264
2013
Dictyoglomus turgidum (B8E1U6), Dictyoglomus turgidum, Dictyoglomus turgidum DSM 6724 (B8E1U6)
Manually annotated by BRENDA team
Yoshida, H.; Yoshihara, A.; Teraoka, M.; Yamashita, S.; Izumori, K.; Kamitori, S.
Structure of L-rhamnose isomerase in complex with L-rhamnopyranose demonstrates the sugar-ring opening mechanism and the role of a substrate sub-binding site
FEBS Open Bio
3
35-40
2013
Pseudomonas stutzeri (Q75WH8)
Manually annotated by BRENDA team
Lin, C.J.; Tseng, W.C.; Fang, T.Y.
Characterization of a thermophilic L-rhamnose isomerase from Caldicellulosiruptor saccharolyticus ATCC 43494
J. Agric. Food Chem.
59
8702-8708
2011
Caldicellulosiruptor saccharolyticus (A4XHV7), Caldicellulosiruptor saccharolyticus, Caldicellulosiruptor saccharolyticus ATCC 43494 (A4XHV7)
Manually annotated by BRENDA team
Park, C.
Characterization of a recombinant L-rhamnose isomerase from Bacillus subtilis and its application on production of L-lyxose and L-mannose
Biotechnol. Bioprocess Eng.
19
18-25
2014
Bacillus subtilis, Bacillus subtilis ATCC 23857
-
Manually annotated by BRENDA team
Seo, M.J.; Choi, J.H.; Kang, S.H.; Shin, K.C.; Oh, D.K.
Characterization of L-rhamnose isomerase from Clostridium stercorarium and its application to the production of D-allose from D-allulose (D-psicose)
Biotechnol. Lett.
40
325-334
2018
Thermoclostridium stercorarium subsp. stercorarium (L7VQ35), Thermoclostridium stercorarium subsp. stercorarium DSM 8532 (L7VQ35)
Manually annotated by BRENDA team
Bai, W.; Shen, J.; Zhu, Y.; Men, Y.; Sun, Y.; Ma, Y.
Characteristics and kinetic properties of L-rhamnose isomerase from Bacillus subtilis by isothermal titration calorimetry for the production of D-allose
Food Sci. Technol. Res.
21
13-22
2015
Bacillus subtilis (O05264), Bacillus subtilis 168 (O05264)
-
Manually annotated by BRENDA team
Chen, Z.; Xu, W.; Zhang, W.; Zhang, T.; Jiang, B.; Mu, W.
Characterization of a thermostable recombinant L-rhamnose isomerase from Caldicellulosiruptor obsidiansis OB47 and its application for the production of L-fructose and L-rhamnulose
J. Sci. Food Agric.
98
2184-2193
2018
Caldicellulosiruptor obsidiansis (D9TIY8), Caldicellulosiruptor obsidiansis OB47, Caldicellulosiruptor obsidiansis OB47 (D9TIY8)
Manually annotated by BRENDA team
Xu, W.; Zhang, W.; Tian, Y.; Zhang, T.; Jiang, B.; Mu, W.
Characterization of a novel thermostable L-rhamnose isomerase from Thermobacillus composti KWC4 and its application for production of D-allose
Process Biochem.
53
153-161
2017
Thermobacillus composti (L0ECT7), Thermobacillus composti DSM 18247 (L0ECT7)
-
Manually annotated by BRENDA team