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Reference on EC 4.6.1.16 - tRNA-intron lyase

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REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Attardi, D.G.; Margarit, I.; Tocchini-Valentini, G.P.
Structural alterations in mutant precursors of the yeast tRNALeu3 gene which behave as defective substrates for a highly purified splicing endoribonuclease
EMBO J.
4
3289-3297
1985
Xenopus laevis
Manually annotated by BRENDA team
Peebles, C.L.; Gegenheimer, P.; Abelson, J.
Precise excision of intervening sequences from precursor tRNAs by a membrane-associated yeast endonuclease
Cell
32
525-536
1983
Saccharomyces cerevisiae, Saccharomyces cerevisiae M304
Manually annotated by BRENDA team
Thompson, L.D.; Brandon, L.D.; Nieuwlandt, D.T.; Daniels, C.J.
Transfer RNA intron processing in the halophilic archaebacteria
Can. J. Microbiol.
35
36-42
1989
Haloferax volcanii
Manually annotated by BRENDA team
Thompson, L.D.; Daniels, C.J.
A tRNA(Trp) intron endonuclease from Halobacterium volcanii. Unique substrate recognition properties
J. Biol. Chem.
263
17951-17959
1988
Haloferax volcanii
Manually annotated by BRENDA team
Green, P.R.; Abelson, J.N.
Highly purified transfer RNA splicing endonuclease from Saccharomyces cerevisiae
Methods Enzymol.
181
471-480
1990
Saccharomyces cerevisiae, Saccharomyces cerevisiae 20B-12-1
Manually annotated by BRENDA team
Gandini-Attardi, D.; Baldi, I.M.; Mattoccia, E.; Tocchini-Valentini, G.P.
Transfer RNA splicing endonuclease from Xenopus laevis
Methods Enzymol.
181
510-517
1990
Xenopus laevis
Manually annotated by BRENDA team
Thompson, L.D.; Daniels, C.J.
Recognition of exon-intron boundaries by the Halobacterium volcanii tRNA intron endonuclease
J. Biol. Chem.
265
18104-18111
1990
Haloferax volcanii
Manually annotated by BRENDA team
Miao, F.; Abelson, J.
Yeast tRNA-splicing endonuclease cleaves precursor tRNA in a random pathway
J. Biol. Chem.
268
672-677
1993
Saccharomyces cerevisiae, Saccharomyces cerevisiae 20B-12-1
Manually annotated by BRENDA team
Stange, N.; Gross, H.J.; Beier, H.
Wheat germ splicing endonuclease is highly specific for plant pre-tRNAs
EMBO J.
7
3823-3828
1988
Homo sapiens, Triticum aestivum
Manually annotated by BRENDA team
Baldi, M.I.; Mattoccia, E.; Bufardeci, E.; Fabri, S.; Tocchini-Valentini, G.P.
Participation of the intron in the reaction catalyzed by the Xenopus tRNA splicing endonuclease
Science
255
1404-1408
1992
Xenopus laevis
Manually annotated by BRENDA team
Li, H.; Trotta, C.R.; Abelson, J.
Crystal structure and evolution of a transfer RNA splicing enzyme
Science
280
279-284
1998
Methanocaldococcus jannaschii
Manually annotated by BRENDA team
Fabbri, S.; Fruscoloni, P.; Bufardeci, E.; Di Nicola Negri, E.; Baldi, M.I.; Attardi, D.G.; Mattoccia, E.; Tocchini-Valentini, G.P.
Conservation of substrate recognition mechanisms by tRNA splicing endonucleases
Science
280
284-286
1998
Saccharomyces cerevisiae, Saccharolobus solfataricus, Xenopus laevis
Manually annotated by BRENDA team
Abelson, J.; Trotta, C.R.; Li, H.
tRNA splicing
J. Biol. Chem.
273
12685-12688
1998
Saccharomyces cerevisiae, Haloferax volcanii, Methanocaldococcus jannaschii, Xenopus laevis
Manually annotated by BRENDA team
Kleman-Leyer, K.; Armbruster, D.W.; Daniels, C.J.
Properties of H. volcanii tRNA intron endonuclease reveal a relationship between the archaeal and eucaryal tRNA intron processing systems
Cell
89
839-847
1997
Haloferax volcanii
Manually annotated by BRENDA team
Trotta, C.R.; Miao, F.; Arn, E.A.; Stevens, S.W.; Ho, C.K.; Rauhut, R.; Abelson, J.N.
The yeast tRNA splicing endonuclease: a tetrameric enzyme with two active site subunits homologous to the archaeal tRNA endonucleases
Cell
89
849-858
1997
Saccharomyces cerevisiae
Manually annotated by BRENDA team
Yoshihisa, T.; Yunoki-Esaki, K.; Ohshima, C.; Tanaka, N.; Endo, T.
Possibility of cytoplasmic pre-tRNA splicing: the yeast tRNA splicing endonuclease mainly localizes on the mitochondria
Mol. Biol. Cell
14
3266-3279
2003
Saccharomyces cerevisiae
Manually annotated by BRENDA team
Fruscoloni, P.; Baldi, M.I.; Tocchini-Valentini, G.P.
Cleavage of non-tRNA substrates by eukaryal tRNA splicing endonucleases
EMBO Rep.
2
217-221
2001
Xenopus laevis
Manually annotated by BRENDA team
Di Nicola Negri, E.; Fabbri, S.; Bufardeci, E.; Baldi, M.I.; Gandini Attardi, D.; Mattoccia, E.; Tocchini-Valentini, G.P.
The eucaryal tRNA splicing endonuclease recognizes a tripartite set of RNA elements
Cell
89
859-866
1997
Xenopus laevis
Manually annotated by BRENDA team
Akama, K.; Junker, V.; Beier, H.
Identification of two catalytic subunits of tRNA splicing endonuclease from Arabidopsis thaliana
Gene
257
177-185
2000
Arabidopsis thaliana (Q9M1E8), Arabidopsis thaliana
Manually annotated by BRENDA team
Li, H.; Abelson, J.
Crystal structure of a dimeric archaeal splicing endonuclease
J. Mol. Biol.
302
639-648
2000
Archaeoglobus fulgidus
Manually annotated by BRENDA team
Stephens, K.M.; Monnat, R.J., Jr.; Heath, P.J.; Stoddard, B.L.
Crystallization and preliminary X-ray studies of I-CreI: a group I intron-encoded endonuclease from C. reinhardtii
Proteins
28
137-139
1997
Chlamydomonas reinhardtii
Manually annotated by BRENDA team
Akama, K.; Junker, V.; Yukawa, Y.; Sugiura, M.; Beier, H.
Splicing of arabidopsis tRNA(Met) precursors in tobacco cell and wheat germ extracts
Plant Mol. Biol.
44
155-165
2000
Arabidopsis thaliana, Triticum aestivum
Manually annotated by BRENDA team
Zhang, Y.; Li, H.
Structure determination of a truncated dimeric splicing endonuclease in pseudo-face-centered space group P2(1)2(1)2
Acta Crystallogr. Sect. D
60
447-452
2004
Archaeoglobus fulgidus
Manually annotated by BRENDA team
Yoshinari, S.; Fujita, S.; Masui, R.; Kuramitsu, S.; Yokobori, S.; Kita, K.; Watanabe, Y.
Functional reconstitution of a crenarchaeal splicing endonuclease in vitro
Biochem. Biophys. Res. Commun.
334
1254-1259
2005
Sulfurisphaera tokodaii, Sulfurisphaera tokodaii 7
Manually annotated by BRENDA team
Calvin, K.; Hall, M.D.; Xu, F.; Xue, S.; Li, H.
Structural characterization of the catalytic subunit of a novel RNA splicing endonuclease
J. Mol. Biol.
353
952-960
2005
Saccharolobus solfataricus
Manually annotated by BRENDA team
Tocchini-Valentini, G.D.; Fruscoloni, P.; Tocchini-Valentini, G.P.
Coevolution of tRNA intron motifs and tRNA endonuclease architecture in archaea
Proc. Natl. Acad. Sci. USA
102
15418-15422
2005
Archaeoglobus fulgidus, Methanocaldococcus jannaschii, Saccharolobus solfataricus, Xenopus laevis
Manually annotated by BRENDA team
Randau, L.; Calvin, K.; Hall, M.; Yuan, J.; Podar, M.; Li, H.; Soll, D.
The heteromeric Nanoarchaeum equitans splicing endonuclease cleaves noncanonical bulge-helix-bulge motifs of joined tRNA halves
Proc. Natl. Acad. Sci. USA
102
17934-17939
2005
Nanoarchaeum equitans
Manually annotated by BRENDA team
Xue, S.; Calvin, K.; Li, H.
RNA recognition and cleavage by a splicing endonuclease
Science
312
906-910
2006
Archaeoglobus fulgidus
Manually annotated by BRENDA team
Lu, J.; Esberg, A.; Huang, B.; Bystroem, A.S.
Kluyveromyces lactis gamma-toxin, a ribonuclease that recognizes the anticodon stem loop of tRNA
Nucleic Acids Res.
36
1072-1080
2008
Escherichia coli
Manually annotated by BRENDA team
Calvin, K.; Xue, S.; Ellis, C.; Mitchell, M.H.; Li, H.
Probing the catalytic triad of an archaeal RNA splicing endonuclease
Biochemistry
47
13659-13665
2008
Archaeoglobus fulgidus
Manually annotated by BRENDA team
Budde, B.S.; Namavar, Y.; Barth, P.G.; Poll-The, B.T.; Nuernberg, G.; Becker, C.; van Ruissen, F.; Weterman, M.A.; Fluiter, K.; te Beek, E.T.; et al.
tRNA splicing endonuclease mutations cause pontocerebellar hypoplasia
Nat. Genet.
40
1113-1118
2008
Homo sapiens
Manually annotated by BRENDA team
Weitzer, S.; Martinez, J.
hClp1: a novel kinase revitalizes RNA metabolism
Cell Cycle
6
2133-2137
2007
Homo sapiens
Manually annotated by BRENDA team
Calvin, K.; Li, H.
RNA-splicing endonuclease structure and function
Cell. Mol. Life Sci.
65
1176-1185
2008
Saccharomyces cerevisiae
Manually annotated by BRENDA team
Yoshihisa, T.; Ohshima, C.; Yunoki-Esaki, K.; Endo, T.
Cytoplasmic splicing of tRNA in Saccharomyces cerevisiae
Genes Cells
12
285-297
2007
Saccharomyces cerevisiae
Manually annotated by BRENDA team
Kim, Y.K.; Mizutani, K.; Rhee, K.H.; Nam, K.H.; Lee, W.H.; Lee, E.H.; Kim, E.E.; Park, S.Y.; Hwang, K.Y.
Structural and mutational analysis of tRNA intron-splicing endonuclease from Thermoplasma acidophilum DSM 1728: catalytic mechanism of tRNA intron-splicing endonucleases
J. Bacteriol.
189
8339-8346
2007
Thermoplasma acidophilum (Q9HIY5)
Manually annotated by BRENDA team
Calvin, K.; Li, H.
Achieving specific RNA cleavage activity by an inactive splicing endonuclease subunit through engineered oligomerization
J. Mol. Biol.
366
642-649
2007
Saccharolobus solfataricus
Manually annotated by BRENDA team
Weitzer, S.; Martinez, J.
The human RNA kinase hClp1 is active on 3 transfer RNA exons and short interfering RNAs
Nature
447
222-226
2007
Homo sapiens
Manually annotated by BRENDA team
Tocchini-Valentini, G.D.; Fruscoloni, P.; Tocchini-Valentini, G.P.
The dawn of dominance by the mature domain in tRNA splicing
Proc. Natl. Acad. Sci. USA
104
12300-12305
2007
Archaeoglobus fulgidus (O29362)
Manually annotated by BRENDA team
Okuda, M.; Shiba, T.; Inaoka, D.K.; Kita, K.; Kurisu, G.; Mineki, S.; Harada, S.; Watanabe, Y.; Yoshinari, S.
A conserved lysine residue in the crenarchaea-specific loop is important for the crenarchaeal splicing endonuclease activity
J. Mol. Biol.
405
92-104
2011
Aeropyrum pernix (Q9YBF1), Aeropyrum pernix
Manually annotated by BRENDA team
Gibb, E.A.; Edgell, D.R.
Better late than early: delayed translation of intron-encoded endonuclease I-TevI is required for efficient splicing of its host group I intron
Mol. Microbiol.
78
35-46
2010
Tequatrovirus T4
Manually annotated by BRENDA team
Hirata, A.; Kitajima, T.; Hori, H.
Cleavage of intron from the standard or non-standard position of the precursor tRNA by the splicing endonuclease of Aeropyrum pernix, a hyper-thermophilic Crenarchaeon, involves a novel RNA recognition site in the Crenarchaea specific loop
Nucleic Acids Res.
39
9376-9389
2011
Aeropyrum pernix (Q9YE85), Aeropyrum pernix, Archaeoglobus fulgidus
Manually annotated by BRENDA team
Fujishima, K.; Sugahara, J.; Miller, C.S.; Baker, B.J.; Di Giulio, M.; Takesue, K.; Sato, A.; Tomita, M.; Banfield, J.F.; Kanai, A.
A novel three-unit tRNA splicing endonuclease found in ultrasmall Archaea possesses broad substrate specificity
Nucleic Acids Res.
39
9695-9704
2011
Candidatus Micrarchaeum acidiphilum (C7DIA5), Candidatus Micrarchaeum acidiphilum
Manually annotated by BRENDA team
Yoshinari, S.; Fujita, S.; Masui, R.; Kuramitsu, S.; Yokobori, S.; Kita, K.; Watanabe, Y.
Functional reconstitution of an archaeal splicing endonuclease in vitro
Nucleic Acids Symp. Ser.
49
103-104
2005
Sulfurisphaera tokodaii (Q975R3 and F9VMU0), Sulfurisphaera tokodaii 7 (Q975R3 and F9VMU0)
Manually annotated by BRENDA team
Tocchini-Valentini, G.D.; Fruscoloni, P.; Tocchini-Valentini, G.P.
Processing of multiple-intron-containing pretRNA
Proc. Natl. Acad. Sci. USA
106
20246-20251
2009
Methanocaldococcus jannaschii, Saccharolobus solfataricus
Manually annotated by BRENDA team
Putti, S.; Calandra, P.; Rossi, N.; Scarabino, D.; Deidda, G.; Tocchini-Valentini, G.P.
Highly efficient, in vivo optimized, archaeal endonuclease for controlled RNA splicing in mammalian cells
FASEB J.
27
3466-3477
2013
Methanocaldococcus jannaschii, Methanocaldococcus jannaschii DSM 2661
Manually annotated by BRENDA team
Dhungel, N.; Hopper, A.K.
Beyond tRNA cleavage: novel essential function for yeast tRNA splicing endonuclease unrelated to tRNA processing
Genes Dev.
26
503-514
2012
Saccharomyces cerevisiae
Manually annotated by BRENDA team
Hirata, A.; Fujishima, K.; Yamagami, R.; Kawamura, T.; Banfield, J.F.; Kanai, A.; Hori, H.
X-ray structure of the fourth type of archaeal tRNA splicing endonuclease: insights into the evolution of a novel three-unit composition and a unique loop involved in broad substrate specificity
Nucleic Acids Res.
40
10554-10566
2012
Candidatus Micrarchaeum acidiphilum (C7DIA5), Candidatus Micrarchaeum acidiphilum
Manually annotated by BRENDA team
Yamazaki, S.; Yoshinari, S.; Kita, K.; Watanabe, Y.; Kawarabayasi, Y.
Identification of an entire set of tRNA molecules and characterization of cleavage sites of the intron-containing tRNA precursors in acidothermophilic crenarchaeon Sulfolobus tokodaii strain7
Gene
489
103-110
2011
Sulfurisphaera tokodaii (Q975R3), Sulfurisphaera tokodaii, Sulfurisphaera tokodaii 7 (Q975R3)
Manually annotated by BRENDA team
Tocchini-Valentini, G.D.; Fruscoloni, P.; Tocchini-Valentini, G.P.
Evolution of introns in the archaeal world
Proc. Natl. Acad. Sci. USA
108
4782-4787
2011
Schizosaccharomyces pombe, Saccharolobus solfataricus (D0KSD0), Archaeoglobus fulgidus (O29362), Methanocaldococcus jannaschii (Q58819), Saccharolobus solfataricus 98/2 (D0KSD0)
Manually annotated by BRENDA team
Tocchini-Valentini, G.D.; Tocchini-Valentini, G.P.
Avatar pre-tRNAs help elucidate the properties of tRNA-splicing endonucleases that produce tRNA from permuted genes
Proc. Natl. Acad. Sci. USA
109
21325-21329
2012
Schizosaccharomyces pombe, Methanocaldococcus jannaschii (Q58819)
Manually annotated by BRENDA team
Popow, J.; Englert, M.; Weitzer, S.; Schleiffer, A.; Mierzwa, B.; Mechtler, K.; Trowitzsch, S.; Will, C.L.; Luehrmann, R.; Soell, D.; Martinez, J.
HSPC117 is the essential subunit of a human tRNA splicing ligase complex
Science
331
760-764
2011
Homo sapiens
Manually annotated by BRENDA team
Hirata, A.
Recent insights into the structure, function, and evolution of the RNA-splicing endonucleases
Front. Genet.
10
103
2019
Candidatus Micrarchaeum acidiphilum ARMAN-2 (C7DIA5), Archaeoglobus fulgidus (O29362), Saccharomyces cerevisiae (P16658 AND P39707 AND Q04675 AND Q02825), Saccharomyces cerevisiae, Methanocaldococcus jannaschii (Q58819), Nanoarchaeum equitans (Q74MP4), Homo sapiens (Q8NCE0 AND Q9BSV6 AND Q8WW01 AND Q7Z6J9), Homo sapiens, Methanopyrus kandleri (Q8TGZ5), Pyrobaculum aerophilum (Q8ZVI1), Thermoplasma acidophilum (Q9HIY5), Aeropyrum pernix (Q9YE85), Aeropyrum pernix ATCC 700893 (Q9YE85), Archaeoglobus fulgidus ATCC 49558 (O29362), Methanocaldococcus jannaschii ATCC 43067 (Q58819), Saccharomyces cerevisiae ATCC 204508 (P16658 AND P39707 AND Q04675 AND Q02825), Pyrobaculum aerophilum ATCC 51768 (Q8ZVI1), Thermoplasma acidophilum ATCC 25905 (Q9HIY5)
Manually annotated by BRENDA team