Reference on EC 3.4.21.B30 - UmuD protein

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REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Gonzalez, M.; Rasulova, F.; Maurizi, M.R.; Woodgate, R.
Subunit-specific degradation of the UmuD/D' heterodimer by the ClpXP protease: the role of trans recognition in UmuD' stability
EMBO J.
19
5251-5258
2000
Escherichia coli
Manually annotated by BRENDA team
Gonzalez, M.; Frank, E.G.; Levine, A.S.; Woodgate, R.
Lon-mediated proteolysis of the Escherichia coli UmuD mutagenesis protein: in vitro degradation and identification of residues required for proteolysis
Genes Dev.
12
3889-3899
1998
Escherichia coli
Manually annotated by BRENDA team
Thomas, S.M.; Crowne, H.M.; Pidsley, S.C.; Sedgwick, S.G.
Structural characterization of the Salmonella typhimurium LT2 umu operon
J. Bacteriol.
172
4979-4987
1990
Salmonella enterica subsp. enterica serovar Typhimurium (P22493), Salmonella enterica subsp. enterica serovar Typhimurium, Salmonella enterica subsp. enterica serovar Typhimurium LT2 (P22493)
Manually annotated by BRENDA team
Lee, M.H.; Ohta, T.; Walker, G.C.
A monocysteine approach for probing the structure and interactions of the UmuD protein
J. Bacteriol.
176
4825-4837
1994
Escherichia coli
Manually annotated by BRENDA team
Lee, M.H.; Walker, G.C.
Interactions of Escherichia coli UmuD with activated RecA analyzed by cross-linking UmuD monocysteine derivatives
J. Bacteriol.
178
7285-7294
1996
Escherichia coli
Manually annotated by BRENDA team
Guzzo, A.; Lee, M.H.; Oda, K.; Walker, G.C.
Analysis of the region between amino acids 30 and 42 of intact UmuD by a monocysteine approach
J. Bacteriol.
178
7295-7303
1996
Escherichia coli
Manually annotated by BRENDA team
Lee, M.H.; Guzzo, A.; Walker, G.C.
Inhibition of RecA-mediated cleavage in covalent dimers of UmuD
J. Bacteriol.
178
7304-7307
1996
Escherichia coli
Manually annotated by BRENDA team
Mustard, J.A.; Little, J.W.
Analysis of Escherichia coli RecA interactions with LexA, lambda CI, and UmuD by site-directed mutagenesis of recA
J. Bacteriol.
182
1659-1670
2000
Escherichia coli
Manually annotated by BRENDA team
Sutton, M.D.; Kim, M.; Walker, G.C.
Genetic and biochemical characterization of a novel umuD mutation: insights into a mechanism for UmuD self-cleavage
J. Bacteriol.
183
347-357
2001
Escherichia coli
Manually annotated by BRENDA team
Konola, J.T.; Guzzo, A.; Gow, J.B.; Walker, G.C.; Knight, K.L.
Differential cleavage of LexA and UmuD mediated by recA Pro67 mutants: implications for common LexA and UmuD binding sites on RecA
J. Mol. Biol.
276
405-415
1998
Escherichia coli
Manually annotated by BRENDA team
McDonald, J.P.; Maury, E.E.; Levine, A.S.; Woodgate, R.
Regulation of UmuD cleavage: role of the amino-terminal tail
J. Mol. Biol.
282
721-730
1998
Escherichia coli, Salmonella enterica subsp. enterica serovar Typhimurium
Manually annotated by BRENDA team
Woodgate, R.; Ennis, D.G.
Levels of chromosomally encoded Umu proteins and requirements for in vivo UmuD cleavage
Mol. Gen. Genet.
229
10-16
1991
Escherichia coli
Manually annotated by BRENDA team
Koch, W.H.; Ennis, D.G.; Levine, A.S.; Woodgate, R.
Escherichia coli umuDC mutants: DNA sequence alterations and UmuD cleavage
Mol. Gen. Genet.
233
443-448
1992
Escherichia coli
Manually annotated by BRENDA team
Neher, S.B.; Sauer, R.T.; Baker, T.A.
Distinct peptide signals in the UmuD and UmuD' subunits of UmuD/D' mediate tethering and substrate processing by the ClpXP protease
Proc. Natl. Acad. Sci. USA
100
13219-13224
2003
Escherichia coli
Manually annotated by BRENDA team
Shinagawa, H.; Iwasaki, H.; Kato, T.; Nakata, A.
RecA protein-dependent cleavage of UmuD protein and SOS mutagenesis
Proc. Natl. Acad. Sci. USA
85
1806-1810
1988
Escherichia coli
Manually annotated by BRENDA team
Battista, J.R.; Ohta, T.; Nohmi, T.; Sun, W.; Walker, G.C.
Dominant negative umuD mutations decreasing RecA-mediated cleavage suggest roles for intact UmuD in modulation of SOS mutagenesis
Proc. Natl. Acad. Sci. USA
87
7190-7194
1990
Escherichia coli
Manually annotated by BRENDA team
Sutton, M.D.; Opperman, T.; Walker, G.C.
The Escherichia coli SOS mutagenesis proteins UmuD and UmuD' interact physically with the replicative DNA polymerase
Proc. Natl. Acad. Sci. USA
96
12373-12378
1999
Escherichia coli
Manually annotated by BRENDA team
Peat, T.S.; Frank, E.G.; McDonald, J.P.; Levine, A.S.; Woodgate, R.; Hendrickson, W.A.
The UmuD' protein filament and its potential role in damage induced mutagenesis
Structure
4
1401-1412
1996
Escherichia coli
Manually annotated by BRENDA team
Duzen Jill , D.J.; Walker Graham , W.G.; Sutton Mark , S.M.
Identification of specific amino acid residues in the E. coli beta processivity clamp involved in interactions with DNA polymerase III, UmuD and UmuD
DNA Repair
3
301-312
2004
Escherichia coli
Manually annotated by BRENDA team
Bridges, B.A.
Error-prone repair and translesion synthesis III: The activation of UmuD (or less is more)
DNA Repair
4
1047-1059
2005
Escherichia coli
Manually annotated by BRENDA team
Paetzel, M.; Woodgate, R.
UmuD and UmuD proteins
Handbook of Proteolytic Enzymes (Barrett, A. J. , Rawlings, N. D. , Woessner, J. F. , eds. )Academic Press
2
1976-1981
2004
Escherichia coli, Pseudomonas syringae, Salmonella enterica subsp. enterica serovar Typhimurium
-
Manually annotated by BRENDA team
Paetzel, M.; Woodgate, R.
UmuD and UmuD proteins
Handbook of Proteolytic Enzymes (Barrett, A. J. , Rawlings, N. D. , Woessner; J. F. , eds. )Academic Press
2
1976-1981
2004
Escherichia coli
-
Manually annotated by BRENDA team
Beuning Penny , B.P.; Simon Sharotka , S.S.; Zemla Ada, Z.A.; Barsky Danie, B.D.; Walker Graham , W.G.
A non-cleavable UmuD variant that acts as a UmuD mimic
J. Biol. Chem.
281
9633-9640
2006
Escherichia coli, Escherichia coli (P0AG11)
Manually annotated by BRENDA team
Hare, J.M.; Perkins, S.N.; Gregg-Jolly, L.A.
A constitutively expressed, truncated umuDC operon regulates the recA-dependent DNA damage induction of a gene in Acinetobacter baylyi strain ADP1
Appl. Environ. Microbiol.
72
4036-4043
2006
Acinetobacter baylyi, Acinetobacter baylyi ADP1
Manually annotated by BRENDA team
Godoy, V.G.; Jarosz, D.F.; Simon, S.M.; Abyzov, A.; Ilyin, V.; Walker, G.C.
UmuD and RecA directly modulate the mutagenic potential of the Y family DNA polymerase DinB
Mol. Cell
28
1058-1070
2007
Escherichia coli (P0AG11), Escherichia coli FC40 (P0AG11)
Manually annotated by BRENDA team
Simon, S.M.; Sousa, F.J.; Mohana-Borges, R.; Walker, G.C.
Regulation of Escherichia coli SOS mutagenesis by dimeric intrinsically disordered umuD gene products
Proc. Natl. Acad. Sci. USA
105
1152-1157
2008
Escherichia coli
Manually annotated by BRENDA team
Jiang, Q.; Karata, K.; Woodgate, R.; Cox, M.M.; Goodman, M.F.
The active form of DNA polymerase V is UmuD(2)C-RecA-ATP
Nature
460
359-363
2009
Escherichia coli
Manually annotated by BRENDA team
Foti, J.J.; Delucia, A.M.; Joyce, C.M.; Walker, G.C.
UmuD2 inhibits a non-covalent step during DinB-mediated template slippage on homopolymeric nucleotide runs
J. Biol. Chem.
285
23086-23095
2010
Escherichia coli
Manually annotated by BRENDA team
Fang, J.; Rand, K.D.; Silva, M.C.; Wales, T.E.; Engen, J.R.; Beuning, P.J.
Conformational dynamics of the Escherichia coli DNA polymerase manager proteins UmuD and UmuD
J. Mol. Biol.
398
40-53
2010
Escherichia coli
Manually annotated by BRENDA team
Ollivierre, J.N.; Sikora, J.L.; Beuning, P.J.
The dimeric SOS mutagenesis protein UmuD is active as a monomer
J. Biol. Chem.
286
3607-3617
2011
Escherichia coli, Escherichia coli (P0AG11)
Manually annotated by BRENDA team
Ollivierre, J.N.; Fang, J.; Beuning, P.J.
The roles of UmuD in regulating mutagenesis
J. Nucleic Acids
2010
pii: 947680
2010
Escherichia coli
Manually annotated by BRENDA team
Ollivierre, J.N.; Budil, D.E.; Beuning, P.J.
Electron spin labeling reveals the highly dynamic N-terminal arms of the SOS mutagenesis protein UmuD
Mol. Biosyst.
7
3183-3186
2011
Escherichia coli
Manually annotated by BRENDA team
Aranda, J.; Lopez, M.; Leiva, E.; Magan, A.; Adler, B.; Bou, G.; Barbe, J.
Role of Acinetobacter baumannii UmuD homologs in antibiotic resistance acquired through DNA damage-induced mutagenesis
Antimicrob. Agents Chemother.
58
1771-1773
2014
Acinetobacter baumannii, Acinetobacter baumannii ATCC 17978
Manually annotated by BRENDA team
Ollivierre, J.N.; Sikora, J.L.; Beuning, P.J.
Dimer exchange and cleavage specificity of the DNA damage response protein UmuD
Biochim. Biophys. Acta
1834
611-620
2013
Escherichia coli, Escherichia coli AB1157
Manually annotated by BRENDA team
Hare, J.M.; Adhikari, S.; Lambert, K.V.; Hare, A.E.; Grice, A.N.
The Acinetobacter regulatory UmuDAb protein cleaves in response to DNA damage with chimeric LexA/UmuD characteristics
FEMS Microbiol. Lett.
334
57-65
2012
Acinetobacter baylyi, Acinetobacter baylyi ADP1, Escherichia coli
Manually annotated by BRENDA team
Chaurasiya, K.R.; Ruslie, C.; Silva, M.C.; Voortman, L.; Nevin, P.; Lone, S.; Beuning, P.J.; Williams, M.C.
Polymerase manager protein UmuD directly regulates Escherichia coli DNA polymerase III alpha binding to ssDNA
Nucleic Acids Res.
41
8959-8968
2013
Escherichia coli
Manually annotated by BRENDA team