Reference on EC 3.1.21.3 - type I site-specific deoxyribonuclease
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REF. 
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Janscak, P.; Abadjieva, A.; Firman, K.
The type I restriction endonuclease R.EcoR124I: Over-production and biochemical properties
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Escherichia coli
Gubler, M.; Braguglia, D.; Meyer, J.; Piekarowicz, A.; Bickle, T.A.
Recombination of constant and variable modules alters DNA sequence recognition by type IC restriction-modification enzymes
EMBO J.
11
233-240
1992
Escherichia coli
Abadjieva, A.; Patel, J.; Webb, M.; Zinkevich, V.; Firman, K.
A deletion mutant of the type IC restriction endonuclease EcoR124I expressing a novel DNA specificity
Nucleic Acids Res.
21
4435-4443
1993
Escherichia coli
Taylor, I.; Watts, D.; Kneale, G.
Substrate recognition and selectivity in the type IC DNA modification methylase M.EcoR124I
Nucleic Acids Res.
2
4929-4935
1993
Escherichia coli
Davies, G.P.; Martin, I.; Sturrock, S.S.; Cronshaw, A.; Murray, N.E.; Dryden, D.T.F.
On the structure and operation of type I DNA restriction enzymes
J. Mol. Biol.
290
565-579
1999
Escherichia coli
Zinkevich, V.; Heslop, P.; Glover, S.W.; Weiserova, M.; Hubacek, J.; Firman, K.
Mutation in the specificity polypeptide of the type I restriction endonuclease R*EcoK that affects subunit assembly
J. Mol. Biol.
227
597-601
1992
Escherichia coli
Meister, J.; MacWilliams, M.; Hubner, P.; Jutte, H.; Skrzypek, E.; Piekarowicz, A.; Bickle, T.A.
Macroevolution by transposition: drastic modification of DNA recognition by a type I restriction enzyme following Tn5 transposition
EMBO J.
12
4585-4591
1993
Escherichia coli
Janscak, P.; Dryden, D.T.F.; Firman, K.
Analysis of the subunit assembly of the typeIC restriction-modification enzyme EcoR124I
Nucleic Acids Res.
26
4439-4445
1998
Escherichia coli
Endlich, B.; Linn, S.
Type I restriction enzymes
The Enzymes, 3rd Ed. (Boyer, P. D. , ed. )
14
137-156
1981
Escherichia coli, Salmonella enterica subsp. enterica serovar Typhimurium
-
Sjoestroem, J.E.; Loefdahl, S.; Philipson, L.
Biological characteristics of a type I restriction-modification system in Staphylococcus aureus
J. Bacteriol.
133
1144-1149
1978
Citrobacter freundii, Escherichia coli, Staphylococcus aureus, Staphylococcus aureus RN450
Roberts, R.J.
Restriction enzymes and their isoschizomers
Nucleic Acids Res.
18
2331-2365
1990
Citrobacter freundii, Escherichia coli, Salmonella enterica subsp. enterica serovar Typhi
Roberts, R.J.
Restriction and modification enzymes and their recognition sequences
Nucleic Acids Res.
11
r135-r167
1983
Escherichia coli
Weiserova, M.; Janscak, P.; Benada, O.; Hubacek, J.; Zinkevich, V.E.; Glover, S.W.; Firman, K.
Cloning, production and characterisation of wild type and mutant forms of the R*EcoK endonucleases
Nucleic Acids Res.
21
373-379
1993
Escherichia coli
Roberts, R.J.; Macelis, D.
REBASE - restriction enzymes and methylases
Nucleic Acids Res.
29
268-269
2001
Escherichia coli
Holubova, I.; Vejsadova, S.; Firman, K.; Weiserova, M.
Cellular localization of Type I restriction-modification enzymes is family dependent
Biochem. Biophys. Res. Commun.
319
375-380
2004
Escherichia coli
Szczelkun, M.D.
Kinetic models of translocation, head-on collision, and DNA cleavage by type I restriction endonucleases
Biochemistry
41
2067-2074
2002
Escherichia coli
Matsuno, H.; Furusawa, H.; Okahata, Y.
Direct monitoring of DNA cleavages catalyzed by an ATP-dependent deoxyribonuclease on a 27 MHz quartz-crystal microbalance
Chem. Commun. (Camb.)
2002
470-471
2002
Micrococcus luteus
-
Thomas, A.T.; Brammar, W.J.; Wilkins, B.M.
Plasmid R16 ArdA protein preferentially targets restriction activity of the type I restriction-modification system EcoKI
J. Bacteriol.
185
2022-2025
2003
Escherichia coli
McClelland, S.E.; Dryden, D.T.F.; Szczelkun, M.D.
Continous asay for DNA translocation using fluorescent triplex dissociation: application to type I restriction endonucleases
J. MOl. Biol.
348
895-915
2005
Escherichia coli
Bianco, P.R.; Hurley, E.M.
The type I restriction endonuclease EcoR124I, couples ATP hydrolysis to bidirectional DNA translocation
J. Mol. Biol.
352
837-859
2005
Escherichia coli
Seidel, R.; van Noort, J.; van der Scheer, C.; Bloom, J.G.; Dekker, N.H.; Dutta, C.F.; Blundell, A.; Robinson, T.; Firman, K.; Dekker, C.
Real-time observation of DNA translocation by the type I restriction modification enzyme EcoR124I
Nat. Struct. Mol. Biol.
11
838-843
2004
Escherichia coli
van Noort, J.; van der Heijden, T.; Dutta, C.F.; Firman, K.; Dekker, C.
Initiation of translocation by Type I restriction-modification enzymes is associated with a short DNA extrusion
Nucleic Acids Res.
32
6540-6547
2004
Escherichia coli
Chin, V.; Valinluck, V.; Magaki, S.; Ryu, J.
KpnBI is the prototype of a new family (IE) of bacterial type I restriction-modification system
Nucleic Acids Res.
32
e138
2004
Klebsiella pneumoniae (Q6WN39), Klebsiella pneumoniae, Klebsiella pneumoniae GM236 (Q6WN39)
Jindrova, E.; Schmid-Nuoffer, S.; Hamburger, F.; Janscak, P.; Bickle, T.A.
On the DNA cleavage mechanism of type I restriction enzymes
Nucleic Acids Res.
33
1760-1766
2005
Escherichia coli
Kasarjian, J.K.; Kodama, Y.; Iida, M.; Matsuda, K.; Ryu, J.
Four new type I restriction enzymes identified in Escherichia coli clinical isolates
Nucleic Acids Res.
33
e114
2005
Escherichia coli
Lapkouski, M.; Panjikar, S.; Kuta Smatanova, I.; Csefalvay, E.
Purification, crystallization and preliminary X-ray analysis of the HsdR subunit of the EcoR124I endonuclease from Escherichia coli
Acta Crystallogr. Sect. F
63
582-585
2007
Escherichia coli
Cajthamlova, K.; Sisakova, E.; Weiser, J.; Weiserova, M.
Phosphorylation of Type IA restriction-modification complex enzyme EcoKI on the HsdR subunit
FEMS Microbiol. Lett.
270
171-177
2007
Escherichia coli
Waleron, K.; Waleron, M.; Osipiuk, J.; Podhajska, A.J.; Lojkowska, E.
Identification of a DNA restriction-modification system in Pectobacterium carotovorum strains isolated from Poland
J. Appl. Microbiol.
100
343-351
2006
Pectobacterium carotovorum
Waldron, D.E.; Lindsay, J.A.
Sau1: a novel lineage-specific type I restriction-modification system that blocks horizontal gene transfer into Staphylococcus aureus and between S. aureus isolates of different lineages
J. Bacteriol.
188
5578-5585
2006
Staphylococcus aureus
Obarska-Kosinska, A.; Taylor, J.E.; Callow, P.; Orlowski, J.; Bujnicki, J.M.; Kneale, G.G.
HsdR subunit of the type I restriction-modification enzyme EcoR124I: biophysical characterisation and structural modelling
J. Mol. Biol.
376
438-452
2008
Escherichia coli (Q304R3)
Neely, R.K.; Roberts, R.J.
The BsaHI restriction-modification system: cloning, sequencing and analysis of conserved motifs
BMC Mol. Biol.
9
48
2008
Geobacillus stearothermophilus (B0LX59), Geobacillus stearothermophilus CPW11 (B0LX59)
Ohno, S.; Handa, N.; Watanabe-Matsui, M.; Takahashi, N.; Kobayashi, I.
Maintenance forced by a restriction-modification system can be modulated by a region in its modification enzyme not essential for methyltransferase activity
J. Bacteriol.
190
2039-2049
2008
Escherichia coli
Carpenter, M.A.; Bhagwat, A.S.
DNA base flipping by both members of the PspGI restriction-modification system
Nucleic Acids Res.
36
5417-5425
2008
Pyrococcus sp.
Humbert, O.; Salama, N.R.
The Helicobacter pylori HpyAXII restriction-modification system limits exogenous DNA uptake by targeting GTAC sites but shows asymmetric conservation of the DNA methyltransferase and restriction endonuclease components
Nucleic Acids Res.
36
6893-6906
2008
Helicobacter pylori
Mruk, I.; Blumenthal, R.M.
Tuning the relative affinities for activating and repressing operators of a temporally regulated restriction-modification system
Nucleic Acids Res.
37
983-998
2009
Escherichia coli K-12
Uyen, N.T.; Nishi, K.; Park, S.Y.; Choi, J.W.; Lee, H.J.; Kim, J.S.
Crystallization and preliminary X-ray diffraction analysis of the HsdR subunit of a putative type I restriction enzyme from Vibrio vulnificus YJ016
Acta Crystallogr. Sect. F
64
926-928
2008
Vibrio vulnificus YJ016
Veiga, H.; Pinho, M.G.
Inactivation of the Sau1 Type I restriction-modification system is not sufficient to generate Staphylococcus aureus strains capable of efficiently accepting foreign DNA
Appl. Environ. Microbiol.
75
3034-3038
2009
Staphylococcus aureus
Weiserova, M.; Ryu, J.
Characterization of a restriction modification system from the commensal Escherichia coli strain A0 34/86 (O83:K24:H31)
BMC Microbiol.
8
106
2008
Escherichia coli, Escherichia coli (Q07736), Escherichia coli (Q47281), Escherichia coli A0 34/86 (O83:K24:H31), Escherichia coli A0 34/86 (O83:K24:H31) (Q07736), Escherichia coli A0 34/86 (O83:K24:H31) (Q47281)
Youell, J.; Firman, K.
EcoR124I: from plasmid-encoded restriction-modification system to nanodevice
Microbiol. Mol. Biol. Rev.
72
365-77
2008
Escherichia coli
Ryu, J.; Rowsell, E.
Quick identification of type I restriction enzyme isoschizomers using newly developed ptypeI and reference plasmids
Nucleic Acids Res.
36
e81
2008
Escherichia coli, Salmonella-Escherichia coli hybrid
Neaves, K.J.; Cooper, L.P.; White, J.H.; Carnally, S.M.; Dryden, D.T.; Edwardson, J.M.; Henderson, R.M.
Atomic force microscopy of the EcoKI type I DNA restriction enzyme bound to DNA shows enzyme dimerization and DNA looping
Nucleic Acids Res.
37
2053-2063
2009
Escherichia coli
Bogdanova, E.; Zakharova, M.; Streeter, S.; Taylor, J.; Heyduk, T.; Kneale, G.; Severinov, K.
Transcription regulation of restriction-modification system Esp1396I
Nucleic Acids Res.
37
:3354-3366
2009
synthetic construct
Lee, H.J.; Nishi, K.; Song, J.M.; Kim, J.S.
Expression, crystallization and preliminary X-ray diffraction analysis of a modification subunit of a putative type I restriction enzyme from Vibrio vulnificus YJ016
Acta Crystallogr. Sect. F
65
1271-1273
2009
Vibrio vulnificus YJ016
Lapkouski, M.; Panjikar, S.; Janscak, P.; Smatanova, I.K.; Carey, J.; Ettrich, R.; Csefalvay, E.
Structure of the motor subunit of type I restriction-modification complex EcoR124I
Nat. Struct. Mol. Biol.
16
94-95
2009
Escherichia coli (Q304R3)
Uyen, N.T.; Park, S.Y.; Choi, J.W.; Lee, H.J.; Nishi, K.; Kim, J.S.
The fragment structure of a putative HsdR subunit of a type I restriction enzyme from Vibrio vulnificus YJ016: implications for DNA restriction and translocation activity
Nucleic Acids Res.
37
6960-6969
2009
Vibrio vulnificus YJ016 (Q7MPU7), Vibrio vulnificus YJ016
Park, S.Y.; Lee, H.J.; Song, J.M.; Sun, J.; Hwang, H.J.; Nishi, K.; Kim, J.S.
Structural characterization of a modification subunit of a putative type I restriction enzyme from Vibrio vulnificus YJ016
Acta Crystallogr. Sect. D
68
1570-1577
2012
Vibrio vulnificus (Q7MPU6)
Sinha, D.; Shamayeva, K.; Ramasubramani, V.; Reha, D.; Bialevich, V.; Khabiri, M.; Guzanova, A.; Milbar, N.; Weiserova, M.; Csefalvay, E.; Carey, J.; Ettrich, R.
Interdomain communication in the endonuclease/motor subunit of type I restriction-modification enzyme EcoR124I
J. Mol. Model.
20
2334
2014
Escherichia coli (P10486)
Roberts, G.A.; Houston, P.J.; White, J.H.; Chen, K.; Stephanou, A.S.; Cooper, L.P.; Dryden, D.T.; Lindsay, J.A.
Impact of target site distribution for Type I restriction enzymes on the evolution of methicillin-resistant Staphylococcus aureus (MRSA) populations
Nucleic Acids Res.
41
7472-7484
2013
Staphylococcus aureus
Loenen, W.A.; Dryden, D.T.; Raleigh, E.A.; Wilson, G.G.
Type I restriction enzymes and their relatives
Nucleic Acids Res.
42
20-44
2014
Escherichia coli
Taylor, J.E.; Swiderska, A.; Artero, J.B.; Callow, P.; Kneale, G.
Structural and functional analysis of the symmetrical Type I restriction endonuclease R.EcoR124I(NT)
PLoS ONE
7
e35263
2012
Escherichia coli
Grinkevich, P.; Iermak, I.; Luedtke, N.A.; Mesters, J.R.; Ettrich, R.; Ludwig, J.
pHluorin-assisted expression, purification, crystallization and X-ray diffraction data analysis of the C-terminal domain of the HsdR subunit of the Escherichia coli type I restriction-modification system EcoR124I
Acta Crystallogr. Sect. F
72
672-676
2016
Escherichia coli (Q304R3), Escherichia coli
Huo, W.; Adams, H.M.; Trejo, C.; Badia, R.; Palmer, K.L.
A type I restriction-modification system associated with Enterococcus faecium subspecies separation
Appl. Environ. Microbiol.
85
e02174-18
2019
Enterococcus faecium
Xu, B.; Zhang, P.; Li, W.; Liu, R.; Tang, J.; Fan, H.
hsdS, Belonging to the tType I restriction-modification system, contributes to the Streptococcus suis serotype 2 survival ability in phagocytes
Front. Microbiol.
8
1524
2017
Streptococcus suis
Roer, L.; Aarestrup, F.; Hasman, H.
The EcoKI type I restriction-modification system in Escherichia coli affects but is not an absolute barrier for conjugation
J. Bacteriol.
197
337-342
2015
Escherichia coli K-12 (P08956 AND P08957 AND P05719), Escherichia coli K-12
Cooper, L.P.; Roberts, G.A.; White, J.H.; Luyten, Y.A.; Bower, E.K.M.; Morgan, R.D.; Roberts, R.J.; Lindsay, J.A.; Dryden, D.T.F.
DNA target recognition domains in the type I restriction and modification systems of Staphylococcus aureus
Nucleic Acids Res.
45
3395-3406
2017
Staphylococcus aureus
Csefalvay, E.; Lapkouski, M.; Guzanova, A.; Csefalvay, L.; Baikova, T.; Shevelev, I.; Bialevich, V.; Shamayeva, K.; Janscak, P.; Kuta Smatanova, I.; Panjikar, S.; Carey, J.; Weiserova, M.; Ettrich, R.
Functional coupling of duplex translocation to DNA cleavage in a type I restriction enzyme
PLoS ONE
10
e0128700
2015
Escherichia coli (P10486), Escherichia coli
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