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Information on EC 1.5.98.1 - methylenetetrahydromethanopterin dehydrogenase
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1.5.98.1 methylenetetrahydromethanopterin dehydrogenaseIUBMB Comments
Coenzyme F420 is a 7,8-didemethyl-8-hydroxy-5-deazariboflavin derivative; methanopterin is a pterin analogue. The enzyme is involved in the formation of methane from CO2 in the methanogen Methanothermobacter thermautotrophicus.
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Word Map
- 1.5.98.1
-
methanogen
- archaea
- kandleri
-
methanopyrus
-
h2-forming
-
methanobacterium
- thermoautotrophicum
- methane
-
methanogenesis
-
hydride
-
cyclohydrolase
-
dehydrogenation
-
formyltransferase
-
f420-reducing
- cd2
- n5,n10-methenyltetrahydromethanopterin
-
formylmethanofuran:tetrahydromethanopterin
- formylmethanofuran
-
selenomethionine-labelled
-
re-face
- archaeoglobus
- methenyltetrahydromethanopterin
- methanocaldococcus
-
methanoarchaeon
- maripaludis
-
crevice
-
methanosarcina
-
methenyl-h4mpt+
-
methanotrophic
-
lyotropic
-
extorquens
- fulgidus
-
alpha,beta
The expected taxonomic range for this enzyme is: Archaea, Bacteria
Reaction Schemes
Synonyms
n5,n10-methylenetetrahydromethanopterin dehydrogenase, methylenetetrahydromethanopterin dehydrogenase, f420-dependent methylenetetrahydromethanopterin dehydrogenase, methylene-h(4)mpt dehydrogenase, f420h2-dependent methylenetetrahydromethanopterin dehydrogenase, coenzyme-f420-dependent n5,n10-methylenetetrahydromethanopterin dehydrogenase, f420-dependent methylene-tetrahydromethanopterin dehydrogenase, methylene tetrahydromethanopterin:coenzyme f420 oxidoreductase, coenzyme f420-dependent methylenetetrahydromethanopterin dehydrogenase, 
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SYNONYM 
ORGANISM
UNIPROT
COMMENTARY 
LITERATURE
Coenzyme F420 dependent N5,N10-methylenetetrahydromethanopterin dehydrogenase
-
-
-
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coenzyme F420-dependent methylenetetrahydromethanopterin dehydrogenase
coenzyme-F420-dependent N5,N10-methylenetetrahydromethanopterin dehydrogenase
Dehydrogenase, methylenetetrahydromethanopterin
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-
-
-
EC 1.5.99.9
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-
formerly
-
F420-dependent methylenetetrahydromethanopterin dehydrogenase
F420H2-dependent methylenetetrahydromethanopterin dehydrogenase
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-
Methylene tetrahydromethanopterin:coenzyme F420 oxidoreductase
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-
-
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methylene-H(4)MPT dehydrogenase
Methylene-H4MPT:coenzyme F420 oxidoreductase
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-
-
-
MTD
N5,N10-Methylenetetrahydromethanopterin dehydrogenase
coenzyme F420-dependent methylenetetrahydromethanopterin dehydrogenase
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coenzyme F420-dependent methylenetetrahydromethanopterin dehydrogenase
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-
coenzyme F420-dependent methylenetetrahydromethanopterin dehydrogenase
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-
coenzyme F420-dependent methylenetetrahydromethanopterin dehydrogenase
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coenzyme F420-dependent methylenetetrahydromethanopterin dehydrogenase
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coenzyme-F420-dependent N5,N10-methylenetetrahydromethanopterin dehydrogenase
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coenzyme-F420-dependent N5,N10-methylenetetrahydromethanopterin dehydrogenase
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MTD
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-
-
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MTD
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Mtd and Hmd constitute an alternate pathway for the reduction of F420 with H2 (Hmd-Mtd cycle)
N5,N10-Methylenetetrahydromethanopterin dehydrogenase
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-
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N5,N10-Methylenetetrahydromethanopterin dehydrogenase
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-
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REACTION
REACTION DIAGRAM
COMMENTARY
ORGANISM
UNIPROT
LITERATURE
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420 + H+ = 5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420 + H+ = 5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
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-
-
-
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420 + H+ = 5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
ternary complex mechanism
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5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420 + H+ = 5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
ternary complex mechanism
-
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420 + H+ = 5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
ternary complex mechanism
-
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420 + H+ = 5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
si face specific at C5 of F420
-
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420 + H+ = 5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
reversible stereospecific transfer of a hydride ion from the re face at C14a of N5,N10-methylenetetrahydromethanopterin to the si face at C5 of coenzyme F420
-
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420 + H+ = 5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
ternary complex mechanism
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-
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REACTION TYPE
ORGANISM
UNIPROT
COMMENTARY
LITERATURE
oxidation
-
-
-
-
reduction
-
-
-
-
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PATHWAY SOURCE
PATHWAYS
BRENDA
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SYSTEMATIC NAME
IUBMB Comments
5,10-methylenetetrahydromethanopterin:coenzyme-F420 oxidoreductase
Coenzyme F420 is a 7,8-didemethyl-8-hydroxy-5-deazariboflavin derivative; methanopterin is a pterin analogue. The enzyme is involved in the formation of methane from CO2 in the methanogen Methanothermobacter thermautotrophicus.
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CAS REGISTRY NUMBER
COMMENTARY
100357-01-5
-
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SUBSTRATE
PRODUCT
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate)
(Substrate)
LITERATURE
(Substrate)
(Substrate)
COMMENTARY
(Product)
(Product)
LITERATURE
(Product)
(Product)
Reversibility
r=reversible
ir=irreversible
?=not specified
r=reversible
ir=irreversible
?=not specified
5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
5,10-methylenetetrahydromethanopterin + coenzyme F420
hydrogenotrophic methanogenesis pathway in class I methanogens, enzyme of the methanogenic energy metabolism that catalyzes the hydride transfer between substrate and product using coenzyme F420 as hydride carrier
-
-
r
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420
5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420
5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
-
-
-
?
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420
5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
-
r
-
?
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420
5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
-
r
-
?
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420
5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
-
si face specific at C5 of F420
-
?
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420
5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
-
the enzyme is Si-face stereospecific with respect to C5 of F420 and Re-face stereospecific with respect to the methylene group of methylenetetrahydromethanopterin, reaction needs to be performed under strict anaerobic conditions
-
-
r
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420
5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
Archaeoglobus fulgidus VC-19 / DSM 4304
-
r
-
?
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420
5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
-
-
-
?
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420
5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
-
-
-
?
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420
5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
-
the enzyme is Si-face stereospecific with respect to C5 of F420 and Re-face stereospecific with respect to the methylene group of methylenetetrahydromethanopterin, reaction needs to be performed under strict anaerobic conditions
-
-
r
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420
5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
-
-
-
-
?
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420
5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
-
-
-
?
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420
5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
-
r
-
?
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420
5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
-
absolutely dependent on coenzyme F420
-
?
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420
5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
-
fourth step in the CO2 reduction to methane
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-
r
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420
5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
-
substrate binding site structure analysis
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-
r
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420
5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
-
the enzyme is Si-face stereospecific with respect to C5 of F420 and Re-face stereospecific with respect to the methylene group of methylenetetrahydromethanopterin, reaction needs to be performed under strict anaerobic conditions
-
-
r
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420
5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
the enzyme catalyzes the fourth reaction step of CO2-reduction to methane in methanogenic archaea
-
-
?
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420
5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
-
-
-
?
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420
5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
the enzyme catalyzes the fourth reaction step of CO2-reduction to methane in methanogenic archaea
-
-
?
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420
5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
-
-
-
?
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420
5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
-
the enzyme is proposed to function in methanol oxidation step to CO2
-
-
?
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420
5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
-
the enzyme is Si-face stereospecific with respect to C5 of F420 and Re-face stereospecific with respect to the methylene group of methylenetetrahydromethanopterin, reaction needs to be performed under strict anaerobic conditions
-
-
r
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420
5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
-
-
-
?
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420
5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
-
-
-
?
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420
5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
-
-
-
?
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420
5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
-
r
-
?
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420
5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
-
r
-
?
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420
5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
-
r
-
?
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420
5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
-
equilibrium favors oxidation of methylenetetrahydromethanopterin
-
?
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420
5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
-
reversible stereospecific transfer of a hydride ion from the re face at C14a of N5,N10-methylenetetrahydromethanopterin to the si face at C5 of coenzyme F420
-
?
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420
5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
-
absolutely dependent on coenzyme F420
-
?
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420
5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
-
absolutely dependent on coenzyme F420
-
?
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420
5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
-
absolutely dependent on coenzyme F420
-
?
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420
5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
-
the enzyme is Si-face stereospecific with respect to C5 of F420 and Re-face stereospecific with respect to the methylene group of methylenetetrahydromethanopterin, reaction needs to be performed under strict anaerobic conditions
-
-
r
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420
5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
-
r
-
?
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420
5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
-
equilibrium favors oxidation of methylenetetrahydromethanopterin
-
?
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420
5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
-
absolutely dependent on coenzyme F420
-
?
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420
5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
-
r
-
?
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420
5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
-
absolutely dependent on coenzyme F420
-
?
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420
5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
-
absolutely dependent on coenzyme F420
-
?
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420
5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
-
-
-
?
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420
5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
-
-
-
?
additional information
?
-
-
enzyme is involved in CO2 reduction to CH4
-
-
?
additional information
?
-
-
enzyme is involved in CO2 reduction to CH4
-
-
?
additional information
?
-
-
enzyme is involved in CO2 reduction to CH4
-
-
?
additional information
?
-
-
enzyme is involved in CO2 reduction to CH4
-
-
?
additional information
?
-
-
enzyme is involved in CO2 reduction to CH4
-
-
?
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NATURAL SUBSTRATE
NATURAL PRODUCT
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate)
(Substrate)
LITERATURE
(Substrate)
(Substrate)
COMMENTARY
(Product)
(Product)
LITERATURE
(Product)
(Product)
REVERSIBILITY
r=reversible
ir=irreversible
?=not specified
r=reversible
ir=irreversible
?=not specified
5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
5,10-methylenetetrahydromethanopterin + coenzyme F420
hydrogenotrophic methanogenesis pathway in class I methanogens, enzyme of the methanogenic energy metabolism that catalyzes the hydride transfer between substrate and product using coenzyme F420 as hydride carrier
-
-
r
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420
5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420
5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
-
-
-
?
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420
5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
-
-
-
?
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420
5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
-
-
-
-
?
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420
5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
-
fourth step in the CO2 reduction to methane
-
-
r
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420
5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
the enzyme catalyzes the fourth reaction step of CO2-reduction to methane in methanogenic archaea
-
-
?
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420
5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
the enzyme catalyzes the fourth reaction step of CO2-reduction to methane in methanogenic archaea
-
-
?
5,10-methylenetetrahydromethanopterin + oxidized coenzyme F420
5,10-methenyltetrahydromethanopterin + reduced coenzyme F420
-
the enzyme is proposed to function in methanol oxidation step to CO2
-
-
?
additional information
?
-
-
enzyme is involved in CO2 reduction to CH4
-
-
?
additional information
?
-
-
enzyme is involved in CO2 reduction to CH4
-
-
?
additional information
?
-
-
enzyme is involved in CO2 reduction to CH4
-
-
?
additional information
?
-
-
enzyme is involved in CO2 reduction to CH4
-
-
?
additional information
?
-
-
enzyme is involved in CO2 reduction to CH4
-
-
?
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COFACTOR
ORGANISM
UNIPROT
COMMENTARY
LITERATURE
IMAGE
additional information
when NAD+ or NADP+ is used instead of F420, the specific activity is less than 0.001 U/mg
-
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METALS and IONS
ORGANISM
UNIPROT
COMMENTARY
LITERATURE
(NH4)2SO4
Cs+
-
monovalent cations stimulate in the order K+ less than Cs+ less than Na+ less than NH4+ less than Li+
K+
Li+
-
monovalent cations stimulate in the order K+ less than Cs+ less than Na+ less than NH4+ less than Li+
Na+
NH4+
-
monovalent cations stimulate in the order K+ less than Cs+ less than Na+ less than NH4+ less than Li+
(NH4)2SO4
-
0.15M-0.2M (NH4)2SO4 stimulates by a factor of 1.3. Higher concentrations are inhibitory
(NH4)2SO4
-
very high salt concentration are required for high activity. Highest specific acitivity in presence of 2 M (NH4)2SO4. Other salts including NaH2PO4, KH2PO4 and NaCl are also effective in stimulating the enzyme activity
K+
-
0.15M-0.2M K2HPO4 stimulates by a factor of 1.3. Higher concentrations are inhibitory
K+
-
very high salt concentration is required for high activity. Highest specific acitivity in presence of 2 M (NH4)2SO4. Other salts including NaH2PO4, KH2PO4 and NaCl are also effective in stimulating the enzyme activity
K+
-
monovalent cations stimulate in the order K+ less than Cs+ less than Na+ less than NH4+ less than Li+
Na+
-
very high salt concentration is required for high activity. Highest specific acitivity in presence of 2 M (NH4)2SO4. Other salts including NaH2PO4, KH2PO4 and NaCl are also effective in stimulating the enzyme activity
Na+
-
monovalent cations stimulate in the order K+ less than Cs+ less than Na+ less than NH4+ less than Li+
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INHIBITOR
ORGANISM
UNIPROT
COMMENTARY
LITERATURE
IMAGE
(NH4)2SO4
-
0.15M-0.2M (NH4)2SO4 stimulates by a factor of 1.3. Higher concentrations are inhibitory
K2HPO4
-
0.15M-0.2M K2HPO4 stimulates by a factor of 1.3. Higher concentrations are inhibitory
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ACTIVATING COMPOUND
ORGANISM
UNIPROT
COMMENTARY
LITERATURE
IMAGE
additional information
-
relatively high concentrations of lyotropic salt is required for activity, 200fold activation
-
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KM VALUE [mM]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY
LITERATURE
IMAGE
additional information
additional information
-
ternary complex kinetic mechanism
-
0.02
5,10-methylenetetrahydromethanopterin
enzyme from Methanopyrus kandleri, pH and temperature not specified in the publication
0.03
5,10-methylenetetrahydromethanopterin
recombinant enzyme expressed in Escherichia coli, pH and temperature not specified in the publication
0.04
5,10-methylenetetrahydromethanopterin
1 M (NH4)2SO4, at 65°C
0.08
methylenetetrahydromethanopterin
-
native enzyme, pH 6.0, 65°C, N2-atmosphere
0.02
oxidized coenzyme F420
-
native enzyme, pH 6.0, 65°C, N2-atmosphere
0.04
oxidized coenzyme F420
recombinant enzyme expressed in Escherichia coli, pH and temperature not specified in the publication
0.08
oxidized coenzyme F420
enzyme from Methanopyrus kandleri, pH and temperature not specified in the publication
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SPECIFIC ACTIVITY [µmol/min/mg]
ORGANISM
UNIPROT
COMMENTARY
LITERATURE
additional information
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pH OPTIMUM
ORGANISM
UNIPROT
COMMENTARY
LITERATURE
7.5
8
-
assay at, substrate methenyltetrahydromethanopterin, reverse reaction
6
-
assay at, substrate methylenetetrahydromethanopterin, forward reaction
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TEMPERATURE OPTIMUM
ORGANISM
UNIPROT
COMMENTARY
LITERATURE
60
65
70
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TEMPERATURE RANGE
ORGANISM
UNIPROT
COMMENTARY
LITERATURE
20 - 80
20°C: about 55% of maximal activity, 80°C: about 75% of maximal activity
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pI VALUE
ORGANISM
UNIPROT
COMMENTARY
LITERATURE
4.9
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ORGANISM
COMMENTARY
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
