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Reference on EC 1.14.12.12 - naphthalene 1,2-dioxygenase

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REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Resnick, S.M.; Gibson, D.T.
Oxidation of 6,7-dihydro-5H-benzocycloheptene by bacterial strains expressing naphthalene dioxygenase, biphenyl dioxygenase, and toluene dioxygenase yields homochiral mono-ol or cis-diol enantiomers as major products
Appl. Environ. Microbiol.
62
1364-1368
1996
Pseudomonas sp.
Manually annotated by BRENDA team
Haigler, B.E.; Gibson, D.T.
Purification and properties of NADH-ferredoxinNAP reductase, a component of naphthalene dioxygenase from Pseudomonas sp. strain NCIB 9816
J. Bacteriol.
172
457-464
1990
Pseudomonas sp.
Manually annotated by BRENDA team
Jeffrey, A.M.; Yeh, H.J.C.; Jerina, D.M.; Patel, T.R.; Davey, J.F.; Gibson, D.T.
Initial reactions in the oxidation of naphthalene by Pseudomonas putida
Biochemistry
14
575-584
1975
Pseudomonas putida, Pseudomonas putida 119
Manually annotated by BRENDA team
Ensley, B.D.; Gibson, D.T.
Naphthalene dioxygenase: purification and properties of a terminal oxygenase component
J. Bacteriol.
155
505-511
1983
Pseudomonas sp., Pseudomonas sp. NCIB 9816
Manually annotated by BRENDA team
Ensley, B.D.; Haigler, B.E.
Naphthalene dioxygenase from Pseudomonas NCIB 9816
Methods Enzymol.
188
46-52
1990
Pseudomonas sp.
Manually annotated by BRENDA team
Kurkela, S.; Lehvslaiho, H.; Palva, E.T.; Teeri, T.H.
Cloning, nucleotide sequence and characterization of genes encoding naphthalene dioxygenase of Pseudomonas putida strain NCIB9816
Gene
73
355-362
1988
Pseudomonas sp.
Manually annotated by BRENDA team
Ensley, B.D.; Gibson, D.T.; Laborde, A.L.
Oxidation of naphthalene by a multicomponent enzyme system from Pseudomonas sp. strain NCIB 9816
J. Bacteriol.
149
948-954
1982
Pseudomonas sp.
Manually annotated by BRENDA team
Dua, R.D.; Meera, S.
Purification and characterisation of naphthalene oxygenase from Corynebacterium renale
Eur. J. Biochem.
120
461-465
1981
Corynebacterium renale
Manually annotated by BRENDA team
Catterall, F.A.; Williams, P.A.
Some properties of the naphthalene oxygenase from Pseudomonas sp. NCIB 9816
J. Gen. Microbiol.
67
117-124
1971
Pseudomonas sp.
Manually annotated by BRENDA team
Ensley, B.D.; Ratzkin, B.J.; Osslund, T.D.; Simon, M.J.; Wackett, L.P.; Gibson, D.T.
Expression of naphthalene oxidation genes in Escherichia coli results in the biosynthesis of indigo
Science
222
167-169
1983
Pseudomonas putida, Pseudomonas putida G7
Manually annotated by BRENDA team
Swanson, E.P
Microbial transformation of benzocyclubutene to benzocyclobutene-1-ol and benzocyclobutene-1-one
Appl. Environ. Microbiol.
58
3404-3406
1992
Pseudomonas fluorescens
Manually annotated by BRENDA team
Whited, G.M.; Downie, J.C.; Hudlicky, T.; Fearnley, S.P.; Dudding, t.C.; Olivo, H.F.; Parker, D.
Oxidation of 2-methoxynaphthalene by toluene, naphthalene and biphenyl dioxygenases: structure and absolute stereochemistry of metabolites
Bioorg. Med. chem.
2
727-734
1994
Pseudomonas sp.
Manually annotated by BRENDA team
Cidaria, D.; Deidda, F.; Bosetti, A.
A rapid method for naphthalene dioxygenase assay in whole cells of naphthalene cis-dihydrodiol dehydrogenase blocked Pseudomonas fluorescens: screening of potential inducrs of dioxyenase activity
Appl. Microbiol. Biotechnol.
41
689-693
1994
Pseudomonas fluorescens, Pseudomonas fluorescens NCIMB 40531
-
Manually annotated by BRENDA team
Gibson, D.T.; Resnick, S.M.; Lee, K.; Brand, J.M.; Torok, D.S.; Wackett, L.P.; Schocken, M.J.; Haigler, B.E.
Desaturation, dioxygenation, and monooxygenation reactions catalyzed by naphthalene dioxygenase from Pseudomonas sp. strain 9816-4
J. Bacteriol.
177
2615-2621
1995
Pseudomonas sp.
Manually annotated by BRENDA team
Torok, D.S.; Resnick, S.M.; Brand, J.M.; Cruden, D.L.; Gibson, D.T.
Desaturation and oxygenation of 1,2-dihydronaphthalene by toluene and naphthalene dioxygenase
J. Bacteriol.
177
5799-5805
1995
Pseudomonas sp.
Manually annotated by BRENDA team
Resnick, S.M.; Gibson, D.T.
Regio- and stereospecific oxidation of fluorene, dibenzofuran, and dibenzothiophene by naphthalene dioxygenase from Pseudomonas sp. strain NCIB 9816-4
Appl. Environ. Microbiol.
62
4073-4080
1996
Pseudomonas sp.
Manually annotated by BRENDA team
Resnick, s.M.; Gibson, D.T.
Regio- and stereospecific oxidation of 9,10-dihydroanthracene and 9,10-dihydrophenanthrene by naphthalene dioxygenase: structure and absolute stereochemistry of metabolites
Appl. Environ. Microbiol.
62
3355-3359
1996
Pseudomonas sp.
Manually annotated by BRENDA team
Lee, K.; Gibson, D.T.
Stereospecific dihydroxylation of the styrene vinyl group by purified naphthalene dioxygenase from Pseudomonas sp. strain NCIB 9816-4
J. Bacteriol.
178
3353-3356
1996
Pseudomonas sp.
Manually annotated by BRENDA team
Lee, K.; Resnick, S.M.; Gibson, D.T.
Stereospecific oxidation of (R)- and (S)-1-indanol by naphthalene dioxygenase from Pseudomonas sp. strain NCIB 9816-4
Appl. Environ. Microbiol.
63
2067-2070
1997
Pseudomonas sp.
Manually annotated by BRENDA team
Larkin, M.J.; Allen, C.C.R.; Kulakov, L.A.; Lipscomb, D.A.
Purification and characterization of a novel naphthalene dioxygenase from Rhodococcus sp. strain NCIMB12038
J. Bacteriol.
181
6200-6204
1999
Rhodococcus sp., Rhodococcus sp. NCIMB12038
Manually annotated by BRENDA team
Barriault, D.; Sylvestre, M.
Functionality of biphenyl 2,3-dioxygenase components in naphthalene 1,2-dioxygenase
Appl. Microbiol. Biotechnol.
51
592-597
1999
Pseudomonas putida, Pseudomonas putida G7
Manually annotated by BRENDA team
Lee, K
Benzene-induced uncoupling of naphthalene dioxygenase activity and enzyme inactivation by production of hydrogen peroxide
J. Bacteriol.
181
2719-2725
1999
Pseudomonas sp.
Manually annotated by BRENDA team
Parales, R.E.; Lee, K.; Resnick, S.M.; Jiang, H.; Lessner, D.J.; Gibson, D.T
Substrate specificity of naphthalene dioxygenase: effect of specific amino acids at the active site of the enzyme
J. Bacteriol.
182
1641-1649
2000
Pseudomonas sp.
Manually annotated by BRENDA team
Carredano, E.; Karlsson, A.; Kauppi, B.; Choudhury, D.; Parales, R.E.; Parales, J.V.; Lee, K.; Gibson, D.T.; Eklund, H.; Ramaswamy, S.
Substrate binding site of naphthalene 1,2-dioxygenase: functional implications of indole binding
J. Mol. Biol.
296
701-712
2000
Pseudomonas sp.
Manually annotated by BRENDA team
Malik, Z.A.; Allen, C.C.; Gakhar, L.; Lipscomb, D.A.; Larkin, M.J.; Ramaswamy, S.
Crystallization and preliminary X-ray diffraction analysis of naphthalene dioxygenase from Rhodococcus sp. strain NCIMB 12038
Acta Crystallogr. Sect. D
58
2173-2174
2002
Rhodococcus sp., Rhodococcus sp. NCIMB12038
Manually annotated by BRENDA team
Wackett, L.P.; Kwart, L.D.; Gibson, D.T.
Benzylic monooxygenation catalyzed by toluene dioxygenase from Pseudomonas putida
Biochemistry
27
1360-1367
1988
Pseudomonas putida
Manually annotated by BRENDA team
Matsui, T.; Tanaka, Y.; Maruhashi, K.; Kurane, R.
Naphtho[1,2-b]thiophene degradation by Pseudomonas sp. HKT554: involvement of naphthalene dioxygenase
Curr. Microbiol.
46
39-42
2003
Pseudomonas sp., Pseudomonas sp. HKT554
Manually annotated by BRENDA team
Karlsson, A.; Parales, J.V.; Parales, R.E.; Gibson, D.T.; Eklund, H.; Ramaswamy, S.
Crystal structure of naphthalene dioxygenase: side-on binding of dioxygen to iron
Science
299
1039-1042
2003
Pseudomonas sp.
Manually annotated by BRENDA team
Boyd, D.R.; Sharma, N.D.; Haughey, S.A.; Kennedy, M.A.; Malone, J.F.; Shepherd, S.D.; Allen, C.C.R.; Dalton, H.
Dioxygenase-catalyzed sulfoxidation of bicyclic alkylaryl sulfides and chemoenzymatic synthesis of acyclic disulfoxides
Tetrahedron
60
549-559
2004
Pseudomonas putida, Pseudomonas putida 8859
-
Manually annotated by BRENDA team
Jouanneau, Y.; Meyer, C.; Jakoncic, J.; Stojanoff, V.; Gaillard, J.
Characterization of a naphthalene dioxygenase endowed with an exceptionally broad substrate specificity toward polycyclic aromatic hydrocarbons
Biochemistry
45
12380-12391
2006
Sphingomonas sp.
Manually annotated by BRENDA team
Lee, K.
p-hydroxylation reactions catalyzed by naphthalene dioxygenase
FEMS Microbiol. Lett.
255
316-320
2006
Pseudomonas sp., Pseudomonas sp. NCIB 9816-4
Manually annotated by BRENDA team
Gakhar, L.; Malik, Z.A.; Allen, C.C.; Lipscomb, D.A.; Larkin, M.J.; Ramaswamy, S.
Structure and increased thermostability of Rhodococcus sp. naphthalene 1,2-dioxygenase
J. Bacteriol.
187
7222-7231
2005
Rhodococcus sp., Rhodococcus sp. NCIMB12038
Manually annotated by BRENDA team
Ferraro, D.J.; Okerlund, A.L.; Mowers, J.C.; Ramaswamy, S.
Structural basis for regioselectivity and stereoselectivity of product formation by naphthalene 1,2-dioxygenase
J. Bacteriol.
188
6986-6994
2006
Pseudomonas sp., Pseudomonas sp. NCIB 9816-4
Manually annotated by BRENDA team
Karlsson, A.; Parales, J.V.; Parales, R.E.; Gibson, D.T.; Eklund, H.; Ramaswamy, S.
NO binding to naphthalene dioxygenase
J. Biol. Inorg. Chem.
10
483-489
2005
Escherichia coli, Escherichia coli JM109(DE3)
Manually annotated by BRENDA team
McIver, A.M.; Garikipati, S.V.; Bankole, K.S.; Gyamerah, M.; Peeples, T.L.
Microbial oxidation of naphthalene to cis-1,2-naphthalene dihydrodiol using naphthalene dioxygenase in biphasic media
Biotechnol. Prog.
24
593-598
2008
Escherichia coli
Manually annotated by BRENDA team
Ohta, T.; Chakrabarty, S.; Lipscomb, J.D.; Solomon, E.I.
Near-IR MCD of the nonheme ferrous active site in naphthalene 1,2-dioxygenase: correlation to crystallography and structural insight into the mechanism of Rieske dioxygenases
J. Am. Chem. Soc.
130
1601-1610
2008
Pseudomonas sp.
Manually annotated by BRENDA team
Chopard, C.; Azerad, R.; Prange, T.
Naphthalene-dioxygenase-catalyzed cis-dihydroxylation of azaarene derivatives. Part 1: 2-Pyridones and 2-quinolones
J. Mol. Catal. B
50
53-60
2008
Pseudomonas sp.
-
Manually annotated by BRENDA team
Pathak, H.; Madamwar, D.
Biosynthesis of indigo dye by newly isolated naphthalene-degrading strain Pseudomonas sp. HOB1 and its application in dyeing cotton fabric
Appl. Biochem. Biotechnol.
160
1616-1626
2009
Pseudomonas sp., Pseudomonas sp. HOB1
Manually annotated by BRENDA team
Piskonen, R.; Nyyssoenen, M.; Itaevaara, M.
Evaluating the biodegradation of aromatic hydrocarbons by monitoring of several functional genes
Biodegradation
19
883-895
2008
Pseudomonas putida (P0A110 and P0A112), Pseudomonas putida, Pseudomonas putida G7 (P0A110 and P0A112)
Manually annotated by BRENDA team
AbuBakr, S.; Macmil, S.; Nanny, M.; Duncan, K.
Enzymatic transformation of humic substances by NDO
Soil Biol. Biochem.
40
2055-2062
2008
Pseudomonas putida, Pseudomonas putida G7
Manually annotated by BRENDA team
Seo, J.; Ryu, J.Y.; Han, J.; Ahn, J.H.; Sadowsky, M.J.; Hur, H.G.; Chong, Y.
Amino acid substitutions in naphthalene dioxygenase from Pseudomonas sp. strain NCIB 9816-4 result in regio- and stereo-specific hydroxylation of flavanone and isoflavanone
Appl. Microbiol. Biotechnol.
97
693-704
2013
Pseudomonas sp., Pseudomonas sp. NCIB 9816-4
Manually annotated by BRENDA team
Tondervik, A.; Bruheim, P.; Berg, L.; Ellingsen, T.E.; Kotlar, H.K.; Valla, S.; Throne-Holst, M.
Ralstonia sp. U2 naphthalene dioxygenase and Comamonas sp. JS765 nitrobenzene dioxygenase show differences in activity towards methylated naphthalenes
J. Biosci. Bioeng.
113
173-178
2012
Ralstonia sp., Ralstonia sp. U2
Manually annotated by BRENDA team
Chopard, C.; Bertho, G.; Prange, T.
Naphthalene-dioxygenase catalysed cis-dihydroxylation of bicyclic azaarenes
RSC Adv.
2
605-615
2012
Pseudomonas sp., Pseudomonas sp. NCIB 9616-4
-
Manually annotated by BRENDA team
Yen, K.M.; Karl, M.R.
Identification of a new gene, tmoF, in the Pseudomonas mendocina KR1 gene cluster encoding toluene-4-monooxygenase
J. Bacteriol.
174
7253-7261
1992
plasmid NAH7 (Q52009), plasmid NAH7
Manually annotated by BRENDA team
Dutta, K.; Shityakov, S.; Das, P.P.; Ghosh, C.
Enhanced biodegradation of mixed PAHs by mutated naphthalene 1,2-dioxygenase encoded by Pseudomonas putida strain KD6 isolated from petroleum refinery waste
3 Biotech
7
365
2017
Pseudomonas putida, Pseudomonas putida KD6
Manually annotated by BRENDA team
Zhang, X.; Qu, Y.; Ma, Q.; Kong, C.; Zhou, H.; Cao, X.; Shen, W.; Shen, E.; Zhou, J.
Production of indirubin from tryptophan by recombinant Escherichia coli containing naphthalene dioxygenase genes from Comamonas sp. MQ
Appl. Biochem. Biotechnol.
172
3194-3206
2014
Comamonas sp. MQ (G9IE62), Comamonas sp. MQ (G9IE63)
Manually annotated by BRENDA team
Jouanneau, Y.; Meyer, C.; Duraffourg, N.
Dihydroxylation of four- and five-ring aromatic hydrocarbons by the naphthalene dioxygenase from Sphingomonas CHY-1
Appl. Microbiol. Biotechnol.
100
1253-1263
2016
Sphingomonas sp. CHY-1
Manually annotated by BRENDA team
Jin, J.N.; Yao, J.; Zhang, Q.Y.; Yu, C.; Chen, P.; Liu, W.J.; Peng, D.N.; Choi, M.M.
An integrated approach of bioassay and molecular docking to study the dihydroxylation mechanism of pyrene by naphthalene dioxygenase in Rhodococcus sp. ustb-1
Chemosphere
128
307-313
2015
Rhodococcus sp. ustb-1
Manually annotated by BRENDA team
Ji, X.; Xu, J.; Ning, S.; Li, N.; Tan, L.; Shi, S.
Cometabolic degradation of dibenzofuran and dibenzothiophene by a naphthalene-degrading Comamonas sp. JB
Curr. Microbiol.
74
1411-1416
2017
Comamonas sp. JB
Manually annotated by BRENDA team
Peng, R.H.; Fu, X.Y.; Zhao, W.; Tian, Y.S.; Zhu, B.; Han, H.J.; Xu, J.; Yao, Q.H.
Phytoremediation of phenanthrene by transgenic plants transformed with a naphthalene dioxygenase system from Pseudomonas
Environ. Sci. Technol.
48
12824-12832
2014
Pseudomonas putida
Manually annotated by BRENDA team
Ferraro, D.J.; Okerlund, A.; Brown, E.; Ramaswamy, S.
One enzyme, many reactions structural basis for the various reactions catalyzed by naphthalene 1,2-dioxygenase
IUCrJ
4
648-656
2017
Pseudomonas sp. (P0A111), Pseudomonas sp. C18 (P0A111)
Manually annotated by BRENDA team
Escalante, D.E.; Aukema, K.G.; Wackett, L.P.; Aksan, A.
Simulation of the bottleneck controlling access into a Rieske active site Predicting substrates of naphthalene 1,2-dioxygenase
J. Chem. Inf. Model.
57
550-561
2017
Pseudomonas putida (P0A110), Pseudomonas putida (P0A112)
Manually annotated by BRENDA team
Librando, V.; Pappalardo, M.
Theoretical approach to the innovative mutation of naphthalene 1,2-dioxygenase a molecular dynamics and docking study
J. Mol. Model.
20
2354
2014
Pseudomonas putida (P0A110)
Manually annotated by BRENDA team
Yang, Y.; Wang, J.; Liao, J.; Xie, S.; Huang, Y.
Distribution of naphthalene dioxygenase genes in crude oil-contaminated soils
Microb. Ecol.
68
785-793
2014
Pseudomonas sp.
Manually annotated by BRENDA team