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EC Tree
The expected taxonomic range for this enzyme is: Bacteria, Archaea, Eukaryota
Synonyms
(NAD)-linked D-xylose dehydrogenase, D-XDH, D-xylose 1-dehydrogenase, D-xylose dehydrogenase, More, NAD+-dependent xylose dehydrogenase, NAD-D-xylose dehydrogenase, XDH,
XylB ,
more
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(NAD)-linked D-xylose dehydrogenase
-
-
-
-
NAD+-dependent xylose dehydrogenase
NAD-D-xylose dehydrogenase
-
-
-
-
D-xylose 1-dehydrogenase
-
D-xylose 1-dehydrogenase
-
-
D-xylose dehydrogenase
-
-
-
-
D-xylose dehydrogenase
-
-
NAD+-dependent xylose dehydrogenase
-
-
NAD+-dependent xylose dehydrogenase
-
-
-
XDH
-
-
XylB
-
-
additional information
-
the enzyme belongs to the short-chain dehydrogenase/reductase family
additional information
-
the enzyme belongs to the short-chain dehydrogenase/reductase family
-
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D-xylose + NAD+ = D-xylonolactone + NADH + H+
-
-
-
-
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D-xylose:NAD+ 1-oxidoreductase
-
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D-galactose + NAD+
? + NADH
-
low activity
-
?
D-glucose + NAD+
? + NADH
-
-
-
?
D-lyxose + NAD+
? + NADH
-
low activity
-
?
D-xylono-1,4-lactone + NADH + H+
D-xylose + NAD+
-
-
-
-
r
D-xylose + NAD+
D-xylono-1,4-lactone + NADH + H+
-
-
-
-
r
D-xylose + NAD+
D-xylono-1,5-lactone + NADH + H+
D-xylose + NAD+
D-xylonolactone + NADH + H+
L-arabinose + NAD+
? + NADH
-
-
-
?
L-arabinose + NAD+
L-arabinono-1,4-lactone + NADH + H+
-
-
-
?
additional information
?
-
D-xylose + NAD+
?
79% of the activity with D-glucose and NADP+. The enzyme shows also activity with D-xylose and NAD+ as cofactor, D-glucose (NADP+ or NAD+ as cofactor), D-fucose (cofactor NADP+) and D-galactose (cofactor NADP+)
-
-
?
D-xylose + NAD+
?
79% of the activity with D-glucose and NADP+. The enzyme shows also activity with D-xylose and NAD+ as cofactor, D-glucose (NADP+ or NAD+ as cofactor), D-fucose (cofactor NADP+) and D-galactose (cofactor NADP+)
-
-
?
D-xylose + NAD+
D-xylono-1,5-lactone + NADH + H+
-
the enzyme is involved in the pathway for D-xylose metabolism, overview
-
-
r
D-xylose + NAD+
D-xylono-1,5-lactone + NADH + H+
-
the enzyme strongly prefers D-xylose as a substrate, overview
-
-
r
D-xylose + NAD+
D-xylono-1,5-lactone + NADH + H+
-
the enzyme is involved in the pathway for D-xylose metabolism, overview
-
-
r
D-xylose + NAD+
D-xylono-1,5-lactone + NADH + H+
-
the enzyme strongly prefers D-xylose as a substrate, overview
-
-
r
D-xylose + NAD+
D-xylonolactone + NADH + H+
-
highly specific for both substrates
-
?
D-xylose + NAD+
D-xylonolactone + NADH + H+
-
highly specific for both substrates
-
?
D-xylose + NAD+
D-xylonolactone + NADH + H+
-
-
-
-
?
D-xylose + NAD+
D-xylonolactone + NADH + H+
-
-
-
?
D-xylose + NAD+
D-xylonolactone + NADH + H+
-
-
-
-
?
D-xylose + NAD+
D-xylonolactone + NADH + H+
-
-
-
?
D-xylose + NAD+
D-xylonolactone + NADH + H+
-
-
-
?
D-xylose + NAD+
D-xylonolactone + NADH + H+
-
highly specific for both substrates
-
?
D-xylose + NAD+
D-xylonolactone + NADH + H+
-
highly specific for both substrates
-
?
D-xylose + NAD+
D-xylonolactone + NADH + H+
-
specific hydrogen transfer for pro-R -A site
-
?
additional information
?
-
-
L-arabinose is a poor substrate
-
-
?
additional information
?
-
-
L-arabinose is a poor substrate
-
-
?
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D-galactose + NAD+
? + NADH
-
low activity
-
?
D-glucose + NAD+
? + NADH
-
-
-
?
D-lyxose + NAD+
? + NADH
-
low activity
-
?
D-xylono-1,4-lactone + NADH + H+
D-xylose + NAD+
-
-
-
-
r
D-xylose + NAD+
D-xylono-1,4-lactone + NADH + H+
-
-
-
-
r
D-xylose + NAD+
D-xylono-1,5-lactone + NADH + H+
D-xylose + NAD+
D-xylonolactone + NADH + H+
L-arabinose + NAD+
? + NADH
-
-
-
?
D-xylose + NAD+
D-xylono-1,5-lactone + NADH + H+
-
the enzyme is involved in the pathway for D-xylose metabolism, overview
-
-
r
D-xylose + NAD+
D-xylono-1,5-lactone + NADH + H+
-
the enzyme is involved in the pathway for D-xylose metabolism, overview
-
-
r
D-xylose + NAD+
D-xylonolactone + NADH + H+
-
highly specific for both substrates
-
?
D-xylose + NAD+
D-xylonolactone + NADH + H+
-
highly specific for both substrates
-
?
D-xylose + NAD+
D-xylonolactone + NADH + H+
-
-
-
-
?
D-xylose + NAD+
D-xylonolactone + NADH + H+
-
-
-
?
D-xylose + NAD+
D-xylonolactone + NADH + H+
-
-
-
-
?
D-xylose + NAD+
D-xylonolactone + NADH + H+
-
-
-
?
D-xylose + NAD+
D-xylonolactone + NADH + H+
-
-
-
?
D-xylose + NAD+
D-xylonolactone + NADH + H+
-
highly specific for both substrates
-
?
D-xylose + NAD+
D-xylonolactone + NADH + H+
-
highly specific for both substrates
-
?
D-xylose + NAD+
D-xylonolactone + NADH + H+
-
specific hydrogen transfer for pro-R -A site
-
?
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NAD+
-
-
NAD+
-
cannot be replaced by NADP+
NAD+
-
cannot be replaced by NADP+
NAD+
-
dependent on, specific for
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30
D-galactose
-
strain 89B
75
D-xylono-1,4-lactone
-
at pH 7.0 and 25°C
0.0103
NADH
-
at pH 7.0 and 25°C
0.08
D-xylose
25°C, pH 9.0
0.24
D-xylose
25°C, pH 7.0
0.4
D-xylose
25°C, pH 6.8
0.77
D-xylose
-
strain 90A
0.77
D-xylose
-
at pH 7.0 and 25°C
2.9
D-xylose
-
strain 89B
5.9
L-arabinose
-
strain 89B
40
L-arabinose
25°C, pH 9.0
100
L-arabinose
-
strain 90A
100
L-arabinose
25°C, pH 7.0
180
L-arabinose
25°C, pH 6.8
0.043
NAD+
-
at pH 7.0 and 25°C
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1.44
D-xylono-1,4-lactone
-
at pH 7.0 and 25°C
16.6
D-xylose
-
at pH 7.0 and 25°C
22.7
D-xylose
25°C, pH 9.0
26.2
D-xylose
25°C, pH 6.8
30.3
D-xylose
25°C, pH 7.0
22.3
L-arabinose
25°C, pH 6.8
24.2
L-arabinose
25°C, pH 9.0
29.2
L-arabinose
25°C, pH 7.0
25.8
NAD+
25°C, pH 6.8
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66.7
D-xylose
25°C, pH 6.8
125
D-xylose
25°C, pH 7.0
280
D-xylose
25°C, pH 9.0
0.12
L-arabinose
25°C, pH 6.8
0.28
L-arabinose
25°C, pH 7.0
0.6
L-arabinose
25°C, pH 9.0
66.7
NAD+
25°C, pH 9.0
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0.16
NAD+
-
at pH 7.0 and 25°C
0.0192
NADH
-
at pH 7.0 and 25°C
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30
in vivo assay, cell growth at 30°C
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-
-
-
brenda
-
-
-
brenda
-
SwissProt
brenda
-
SwissProt
brenda
-
-
-
brenda
porcine
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-
brenda
-
UniProt
brenda
-
-
-
brenda
gene xylB, the enzyme is encoded in the xylose-inducible xylXABCD operon
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-
brenda
putative
UniProt
brenda
-
UniProt
brenda
gene xylB, the enzyme is encoded in the xylose-inducible xylXABCD operon
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-
brenda
-
-
-
brenda
strains 89B, 90A
-
-
brenda
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-
-
brenda
-
inducible enzyme synthesis by growth in D-xylose-containing medium
brenda
-
inducible enzyme synthesis by growth in D-xylose-containing medium
-
brenda
-
inducible enzyme synthesis by growth in D-xylose-containing medium
brenda
-
inducible enzyme synthesis by growth in D-xylose-containing medium
-
brenda
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XDH_CAUVN
Caulobacter vibrioides (strain NA1000 / CB15N)
248
0
26641
Swiss-Prot
-
A0A1V0RK66_9RHOB
255
0
27153
TrEMBL
-
A0A2N7R1B4_9BURK
262
0
27858
TrEMBL
-
A0A653PG61_9BRAD
253
0
27215
TrEMBL
-
A0A2Z2NPR7_9GAMM
252
1
27080
TrEMBL
-
N1MK27_9SPHN
261
0
27908
TrEMBL
-
A0A0S4KG05_9BURK
261
0
27915
TrEMBL
-
A0A292ZCV1_SPHSA
Sphingobium fuliginis (strain ATCC 27551)
252
0
27087
TrEMBL
-
A0A679IU23_VARPD
260
0
27584
TrEMBL
-
A0A3G9G8P8_9CAUL
249
0
26572
TrEMBL
-
A0A170PPI7_9ZZZZ
272
0
29225
TrEMBL
other Location (Reliability: 1 )
A0A221K1P4_9RHOB
256
2
27141
TrEMBL
-
A0A395KXU6_9RHIZ
252
0
27096
TrEMBL
-
A0A679IRN4_VARPD
257
0
27470
TrEMBL
-
A0A375I6F7_9BURK
255
1
27374
TrEMBL
-
Q13FC8_PARXL
Paraburkholderia xenovorans (strain LB400)
268
0
29068
TrEMBL
-
A0A2N7RVT9_9BURK
255
0
27685
TrEMBL
-
A0A1Y0EDS1_9RHOB
252
0
26448
TrEMBL
-
A0A2N7RUR7_9BURK
255
0
27364
TrEMBL
-
A0A383RW05_9PSED
260
0
28070
TrEMBL
-
A0A1L9NYB8_9RHOB
254
0
27448
TrEMBL
-
A0A1W7M5P4_9SPHN
260
0
27983
TrEMBL
-
A0A1E7W6S7_9BURK
255
0
27360
TrEMBL
-
A0A132C492_9RHOB
256
0
27210
TrEMBL
-
A0A5E7ZJF4_9SPHN
268
0
28865
TrEMBL
-
A0A1E7WQL6_9BURK
255
0
27751
TrEMBL
-
A0A6S7BR06_9BURK
268
0
29220
TrEMBL
-
A0A143QSV1_9NOCA
385
0
42680
TrEMBL
-
A0A7T6XBH9_RALPI
255
0
27550
TrEMBL
-
A0A1E7WVS8_9BURK
255
0
27758
TrEMBL
-
A0A1E7W4X5_9BURK
644
0
69167
TrEMBL
-
Q1QWS7_CHRSD
Chromohalobacter salexigens (strain ATCC BAA-138 / DSM 3043 / CIP 106854 / NCIMB 13768 / 1H11)
245
0
26688
TrEMBL
-
A0A6J4TI01_9SPHN
259
0
28119
TrEMBL
-
A0A1Y0NBL0_9BURK
259
0
27431
TrEMBL
-
A0A1E7VAM6_9BURK
255
0
27751
TrEMBL
-
A0A0E3H0H8_9PSED
255
0
27174
TrEMBL
-
A0A0H2M6K5_VARPD
258
0
27842
TrEMBL
-
A0A0C4YSD5_9BURK
255
0
27289
TrEMBL
-
A0A654AY47_9SPHN
250
0
26504
TrEMBL
-
A0A395LER2_9RHIZ
256
0
27420
TrEMBL
-
R0EDB2_RALPI
255
0
27624
TrEMBL
-
A0A1Y0NAJ7_9BURK
258
0
27812
TrEMBL
-
A0A2S6SD04_9PROT
256
0
29017
TrEMBL
-
A0A2J7W6X9_9BURK
258
0
27461
TrEMBL
-
A0A5P9QD46_9MICO
255
0
26922
TrEMBL
-
A0A5E7Y311_9SPHN
261
0
28210
TrEMBL
-
A0A654BR62_9SPHN
270
0
29023
TrEMBL
-
A1WGG2_VEREI
Verminephrobacter eiseniae (strain EF01-2)
251
0
27591
TrEMBL
-
A0A2N7QTC2_9GAMM
253
0
27494
TrEMBL
-
X4R5C1_9CAUL
249
0
26823
TrEMBL
-
R0CVV3_CAUVI
249
0
26588
TrEMBL
-
A0A165MEF9_RHOFA
385
0
42708
TrEMBL
-
A0A2U0M9P3_KLEPN
200
0
21144
TrEMBL
-
A0A375HJH2_9BURK
229
0
24892
TrEMBL
-
A0A6J5H1M8_9BURK
268
0
29234
TrEMBL
-
A0A0H2MC85_VARPD
260
0
27388
TrEMBL
-
A0A0L0MBF5_9BURK
284
0
30844
TrEMBL
-
A0A2R8CH65_9GAMM
244
0
26555
TrEMBL
-
GLCDH_HALMT
Haloferax mediterranei (strain ATCC 33500 / DSM 1411 / JCM 8866 / NBRC 14739 / NCIMB 2177 / R-4)
357
0
39242
Swiss-Prot
-
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53000
2 * 53000, SDS-PAGE
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dimer
2 * 53000, SDS-PAGE
dimer
-
2 * 53000, SDS-PAGE
-
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additional information
both D-xylono-gamma-lactone and D-xylonate are produced when the Caulobacter crescentus gene xylB encoding D-xylose dehydrogenase is expressed in Saccharomyces cerevisiae, with or without co-expressionof xylC (D-xylonolactonase). XylC facilitates rapid opening of the lactone and more D-xylonate is initially produced than in its absence. In vivo [1H]NMR analysis of cell extracts, culture media and intact cells is used for analysis. The lactone and linear forms of D-xylonic acid are produced, accumulated intracellularly, and partially exported within 15â60 min after D-xylose provision. Co-expression of xylB and xylC leads to rapid loss of pHluorin fluorescence and loss of vitality during production of D-xylonate. Loss of vitality in the presence of D-xylose is correlated to the extracellular pH, but fluorescence is lost from xylB and xylC expressing cells regardless of the extracellular condition. Method optimization, overview
additional information
engineering of non-conventional yeast Pichia kudriavzevii strain VTT C-79090T to recombinantly express the D-xylose dehydrogenase coding gene from Caulobacter crescentus. With this single modification the recombinant strain VTT C-79090T produces up to 171 g/l of D-xylonate from 171 g/l D-xylose at a rate of 1.4 g/l/h and a high yield, which is comparable with D-xylonate production by Gluconobacter oxydans or Pseudomonas sp. The productivity of the strain is also remarkably high at low pH, producing 146 g/l D-xylonate at pH 3.0. Comparison to production of D-xylonate from Saccharomyces cerevisiae strain VTT B-67002 expressing the gene from Caulobacter crescentus, overview
additional information
-
engineering of non-conventional yeast Pichia kudriavzevii strain VTT C-79090T to recombinantly express the D-xylose dehydrogenase coding gene from Caulobacter crescentus. With this single modification the recombinant strain VTT C-79090T produces up to 171 g/l of D-xylonate from 171 g/l D-xylose at a rate of 1.4 g/l/h and a high yield, which is comparable with D-xylonate production by Gluconobacter oxydans or Pseudomonas sp. The productivity of the strain is also remarkably high at low pH, producing 146 g/l D-xylonate at pH 3.0. Comparison to production of D-xylonate from Saccharomyces cerevisiae strain VTT B-67002 expressing the gene from Caulobacter crescentus, overview
additional information
-
both D-xylono-gamma-lactone and D-xylonate are produced when the Caulobacter crescentus gene xylB encoding D-xylose dehydrogenase is expressed in Saccharomyces cerevisiae, with or without co-expressionof xylC (D-xylonolactonase). XylC facilitates rapid opening of the lactone and more D-xylonate is initially produced than in its absence. In vivo [1H]NMR analysis of cell extracts, culture media and intact cells is used for analysis. The lactone and linear forms of D-xylonic acid are produced, accumulated intracellularly, and partially exported within 15â60 min after D-xylose provision. Co-expression of xylB and xylC leads to rapid loss of pHluorin fluorescence and loss of vitality during production of D-xylonate. Loss of vitality in the presence of D-xylose is correlated to the extracellular pH, but fluorescence is lost from xylB and xylC expressing cells regardless of the extracellular condition. Method optimization, overview
-
additional information
-
engineering of non-conventional yeast Pichia kudriavzevii strain VTT C-79090T to recombinantly express the D-xylose dehydrogenase coding gene from Caulobacter crescentus. With this single modification the recombinant strain VTT C-79090T produces up to 171 g/l of D-xylonate from 171 g/l D-xylose at a rate of 1.4 g/l/h and a high yield, which is comparable with D-xylonate production by Gluconobacter oxydans or Pseudomonas sp. The productivity of the strain is also remarkably high at low pH, producing 146 g/l D-xylonate at pH 3.0. Comparison to production of D-xylonate from Saccharomyces cerevisiae strain VTT B-67002 expressing the gene from Caulobacter crescentus, overview
-
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5.3 - 9
-
stable within, strain 89B
286115
6 - 7.5
-
stable within, strain 90A
286115
6.5 - 7.8
-
stable within, no enzymatic activity
286116
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50
-
complete inactivation
65
half-life: 56.8 h, in the presence of 3 M NaCl, stability decreases significantly with lower salt concentrations
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thermolabile, stabilizing: substrates or high ionic strength
-
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4°C, stable for several months
frozen, addition of DTT, several weeks
-
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HisTrap column chromatography
-
NAD+-affinity chromatography
-
to homogeneity, chromatography techniques
-
to homogeneity, chromatography techniques, isoelectric focusing
-
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expressed in Escherichia coli BL21-CodonPlus (DE3)-RIPL cells
-
expression in Saccharomyces cerevisiae
gene xylB, recombinnat expression in Pichia kudriavzevii strain VTT C-79090T
gene xylB, recombinnat expression in Saccharomyces cerevisiae strain VVT B-67002
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synthesis
expression of gene xylB in Saccharomyces cerevisiae results in production of 17 g D-xylonate/l at 0.23g/l/h from 23 g D-xylose/l. D-Xylonate accumulates intracellularly to 70 mg/g, xylitol to 18 mg/g. Cells expressing D-xylonolactone lactonase xylC from Caulobacter crescentus with xylB initially produce more extracellular D-xylonate than cells lacking xylC at both pH5.5 and pH3, and sustain higher production at pH3. Cell vitality and viability decreases during D-xylonate production at pH 3.0
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Yamanaka, K.; Gino, M.
Purification and properties of D-xylose dehydrogenase in bacteria
Hakko Kogaku Kaishi
57
322-331
1979
Pseudomonas sp.
-
brenda
Yamanaka, K.; Gino, M.; Kaneda, R.
A specific NAD-D-xylose dehydrogenase from Arthrobacter sp.
Agric. Biol. Chem.
41
1493-1499
1977
Arthrobacter sp., Arthrobacter sp. 588
-
brenda
Dahms, A.S.; Russo, J.
D-Xylose dehydrogenase
Methods Enzymol.
89
226-228
1982
Pseudomonas sp., Pseudomonas sp. MSU-1
brenda
Mostad, S.B.; Helming, H.L.; Groom, C.; Glasfeld, A.
The stereospecificity of hydrogen transfer to NAD(P)+ catalyzed by lactol dehydrogenases
Biochem. Biophys. Res. Commun.
233
681-686
1997
Sus scrofa
brenda
Bonete, M.J.; Pire, C.; Llorca, F.I.; Camacho, M.L.
Glucose dehydrogenase from the halophilic Archaeon Haloferax mediterranei: Enzyme purification, characterization and N-terminal sequence
FEBS Lett.
383
227-229
1996
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