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5.3.4.1: protein disulfide-isomerase

This is an abbreviated version!
For detailed information about protein disulfide-isomerase, go to the full flat file.

Word Map on EC 5.3.4.1

Reaction

catalyses the rearrangement of -S-S- bonds in proteins =

Synonyms

5'-MD, 58 kDa glucose regulated protein, 58 kDa microsomal protein, AGR2, anterior gradient homolog 2, BPA-binding protein, CaBP1, CaBP2, Cellular thyroid hormone binding protein, cotyledon-specific chloroplast biogenesis factor CYO1, CYO1, DbsG, disulfide bond isomerase, disulfide bond-forming enzyme, Disulfide interchange enzyme, disulfide isomerase, Disulfide isomerase ER-60, disulfide-bond isomerase, dithiol-disulfide isomerase, Dsb, DsbA, DsbB, DsbC, DsbD, DsbG, ECaSt/PDI, endoplasmic reticulum protein EUG1, Eps1p, ER protein 57, ER58, ER60, ERcalcistorin/protein-disulfide isomerase, ERdj5, Ero1, Erp, ERP-57, ERp-72 homolog, ERp18, ERp27, ERp28, ERp44, Erp46, ERp5, ERp57, ERP59, ERP60, ERp72, Eug1p, fibronectin, gPDI-1, gPDI-2, gPDI-3, HIP-70, HlPDI-1, HlPDI-2, HlPDI-3, Iodothyronine 5'-monodeiodinase, More, Mpd1p, Mpd2p, multifunctional protein disulfide isomerase, ncgl2478, P5, P55, P58, pancreas-specific protein disulfide isomerase, PDI, PDI A4, PDI I, PDI II, pdi-15, PDI-1a, pdi-40, pdi-47, pdi-52, PDI-A, PDI-M, PDI-P5, PDI-related protein, PDI1, PDI11, PDI2, PDI7, PDI8, PDIA1, PDIA2, PDIA3, PDIA4, PDIA6, PDIL-1, PDIL-2, PDIL1-1, PDIL1;1, PDIL1Aalpha, PDIL1B, PDIL2, PDIL2-3, PDIL3A, PDIL4D, PDIL5A, PDILT, PDIp, PDIr, protein disulfide isomerase, protein disulfide isomerase 1, protein disulfide isomerase 2, protein disulfide isomerase 3, protein disulfide isomerase A1, protein disulfide isomerase A3, protein disulfide isomerase A5, protein disulfide isomerase A6, protein disulfide isomerase associated 3, Protein disulfide isomerase P5, protein disulfide isomerase-1, protein disulfide isomerase-11, protein disulfide isomerase-2, protein disulfide isomerase-3, protein disulfide isomerase-8, protein disulfide isomerase-like protein of the testis, protein disulfide isomerase-P5, protein disulfide isomerase-related chaperone Wind, Protein disulfide isomerase-related protein, protein disulfide oxidoreductase, protein disulfide reductase/isomerase, protein disulfide-isomerase A4, Protein disulphide isomerase, Protein ERp-72, protein-disulfide isomerase, R-cognin, RB60, Rearrangease, Reduced ribonuclease reactivating enzyme, Retina cognin, S-S rearrangase, SSO0192, SsPDO, thiol-disulfide oxidoreductase, thiol-protein oxidoreductase, thioredoxin domain-containing protein 5, Thyroid hormone-binding protein, Thyroxine deiodinase, TXNDC5, yPDI

ECTree

     5 Isomerases
         5.3 Intramolecular oxidoreductases
             5.3.4 Transposing S-S bonds
                5.3.4.1 protein disulfide-isomerase

Substrates Products

Substrates Products on EC 5.3.4.1 - protein disulfide-isomerase

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SUBSTRATE
PRODUCT                       
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
Reversibility
r=reversible
ir=irreversible
?=not specified
Agp mutant
?
show the reaction diagram
-
folding of Agp mutant, DsbC, mutant of Agp, an AppA homologue, containing the AppA nonconsecutive disulfide bond
-
-
?
alkaline protease inhibitor
?
show the reaction diagram
alpha-globulin
?
show the reaction diagram
PDIL1-1 facilitates the oxidative folding of alpha-globulin
-
-
?
alpha-synuclein
?
show the reaction diagram
-
-
-
?
apolipoprotein B
?
show the reaction diagram
-
-
-
-
?
apolipoprotein B100
?
show the reaction diagram
-
the enzyme assists in the oxidative folding of apolipoprotein B100
-
-
?
beta-actin
?
show the reaction diagram
-
-
-
-
?
bovine pancreatic trypsin inhibitor
?
show the reaction diagram
-
-
-
-
?
carboxypeptidase Y
?
show the reaction diagram
-
maturation of carboxypeptidase Y
-
-
?
cholera toxin
?
show the reaction diagram
-
reduced (but not oxidized) protein-disulfide isomerase displaces the cholera toxin A1 subunit from the holotoxin without unfolding the A1 subunit
-
-
?
citrate synthase
stabilized citrate synthase
show the reaction diagram
-
DsbG suppresses aggregation of luciferase at 43°C, enzyme has both PDI and chaperone activity
-
?
conotoxin lt14a
?
show the reaction diagram
conotoxins sTx3.1
?
show the reaction diagram
disulfide formation, macromolecular crowding has little effect on the protein disulfide isomerase-catalyzed oxidative folding and disulfide isomerization of conotoxin
-
-
?
conotoxins tx3a
?
show the reaction diagram
disulfide formation, macromolecular crowding has little effect on the protein disulfide isomerase-catalyzed oxidative folding and disulfide isomerization of conotoxin
-
-
?
creatine kinase
?
show the reaction diagram
-
refolding of creatine kinase, creatine kinase substrate is denatured by 3 M guanidine-HCl, catalysis of creatine kinase refolding by PDI involves disulfide cross-link and dimer to tetramer switch, PDI suppresses aggregation of denatured inactive casein kinase
-
-
?
D-glyceraldehyde 3-phosphate dehydrogenase
?
show the reaction diagram
-
-
-
-
?
degenerated RNase type III
?
show the reaction diagram
refolding of degenerated RNase type III, bovine pancreatic substrate, recombinant GST-tagged PDI, the coupled-assay method involves reduction of insulin in presence of DTT
-
-
?
denatured D-glceraldehyde-3-phosphate dehydrogenase
refolded D-glceraldehyde-3-phosphate dehydrogenase
show the reaction diagram
-
interaction of PDI with cyclophilin B increases its chaperone activity
-
?
denatured D-glyceraldehyde-3-phosphate dehydrogenase
refolded D-glyceraldehyde-3-phosphate dehydrogenase
show the reaction diagram
-
chaperone activity of PDI
-
?
denatured eclosion hormone
active eclosion hormon
show the reaction diagram
-
PDI acts as a chaperone and refolds the insect neuropeptide eclosion hormone
-
?
denatured lysozyme
?
show the reaction diagram
-
PDI catalyzes the formation, rearrangement, and breakage of disulfide bonds, oxidative refolding by PDI almost completely restores lysozyme activity, overview
-
-
?
denatured lysozyme
native lysozyme
show the reaction diagram
denatured rhodanese
?
show the reaction diagram
-
PDI exhibits chaperone activity with rhodanese
-
-
?
denatured rhodanese
refolded rhodanese
show the reaction diagram
-
interaction of PDI with cyclophilin B increases its chaperone activity
-
?
denatured RNase A
?
show the reaction diagram
recombinant CYO1 renatures RNase A
-
-
?
denatured Rnase A
active Rnase A
show the reaction diagram
-
-
-
-
?
denatured RNase A + GSH
renatured RNase A + GSSG
show the reaction diagram
-
-
-
-
?
denatured-reduced lysozyme
?
show the reaction diagram
-
oxidase activity of PDI
-
-
?
dieosin glutathione disulfide
eosin glutathione sulfide
show the reaction diagram
-
-
-
?
E2A homodimer
E2A-basic helix-loop-helix protein heterodimer
show the reaction diagram
-
PDI I and PDI II foster heterodimer formation between E proteins, i.e. basic-loop-helix proteins of the E2A gene products, by a redox mechanism
-
?
envelope glycoprotein 120
envelope glycoprotein 120
show the reaction diagram
-
i.e. human immunodeficiency virus gp120
-
?
estrogen receptor alpha
?
show the reaction diagram
folded cholera toxin
unfolded cholera toxin
show the reaction diagram
-
PDI binds in the reduced state to the A chain of cholera toxin, in the oxidized state it releases it, PDI may be involved in the retrograde protein transport into the cytosol
-
?
glutathione disulfide
glutathione
show the reaction diagram
-
-
-
?
glycoprotein 120
glycoprotein 120
show the reaction diagram
-
PDI may play a role in HIV-1 infection by reducing HIV-1 envelope glycoprotein 120
-
?
GSSG
GSH
show the reaction diagram
-
disulfide reduction of GSSG, the disulfide reduction activity of both PDI-thioredoxin reductase and PDI-DTT is reduced
-
-
?
HED-SSM
MSH + HED
show the reaction diagram
insulin
?
show the reaction diagram
insulin
reduced insulin
show the reaction diagram
insulin + DTT
?
show the reaction diagram
bovine substrate, reductase activity with DTT
-
-
?
Insulin-(SS) + dithiothreitol
Insulin-(SH)2 + oxidized dithiothreitol
show the reaction diagram
-
-
-
?
Insulin-(SS) + GSH
Insulin-(SH)2 + GSSG
show the reaction diagram
integrin alphaIIb
?
show the reaction diagram
-
-
-
-
?
integrin alphaIIbbeta3
?
show the reaction diagram
-
-
-
-
?
integrin alphaMb2
?
show the reaction diagram
-
-
-
-
?
integrin alphaVb3
?
show the reaction diagram
-
-
-
-
?
integrin alphaVbeta3
?
show the reaction diagram
-
-
-
-
?
integrin beta3
?
show the reaction diagram
-
-
-
-
?
integrin subunit alpha11
?
show the reaction diagram
-
the enzyme activates integrin subunit alpha11
-
-
?
integrin subunit beta1
?
show the reaction diagram
-
the enzyme activates integrin subunit beta1
-
-
?
kalata B1
?
show the reaction diagram
-
and derivatives, PDI dramatically enhanced the correct oxidative folding of linear and cyclic kalata B1 at physiological pH, determination of folding intermediates
-
-
?
lactate dehydrogenase
?
show the reaction diagram
-
reactivation of self-aggregated denatured lactate dehydrogenase, guanidine HCl-denatured LDH, chaperone activity, both recombinant wild-type PDI and mutant abb'a' interact with self-aggregated lactate dehydrogenase enhancing LDH reactivation and reducing aggregation
-
-
?
luciferase
stabilized luciferase
show the reaction diagram
-
DsbG suppresses aggregation of luciferase at 43°C, enzyme has both PDI and chaperone activity
-
?
lysozyme
?
show the reaction diagram
PDI exhibits both chaperone and antichaperone activities when catalyzing the refolding of reduced/denatured lysozyme in HEPES buffer, effect of macromolecular crowding on the PDI-catalyzed folding, overview
-
-
?
lysozyme
aggregated lysozyme
show the reaction diagram
-
PDI has antichaperone activity facilitating protein aggregation
-
?
NADP malate dehydrogenase
?
show the reaction diagram
-
substrate for isoform PDI-M only
-
-
?
NADPH oxidase A
?
show the reaction diagram
-
-
-
-
?
NADPH thioredoxin reductase
?
show the reaction diagram
-
-
-
-
?
neuronal nitric oxide synthase
?
show the reaction diagram
-
the enzyme catalyzes neuronal nitric oxide synthase dimerization
-
-
?
NRCSQGSCWN
?
show the reaction diagram
NRCSQGSCWN
NRCSQGSCWN
show the reaction diagram
oxidized insulin
reduced insulin
show the reaction diagram
-
-
-
-
?
oxidized insulin + dithiothreitol
reduced insulin
show the reaction diagram
gPDI-2, low activity with gPDI-3, no activity with gPDI-1
-
?
oxidoreductase Ero1
?
show the reaction diagram
-
disulfide bond formation in the oxidoreductase Ero1, endoplasmic reticular protein interacts with PDILT
-
-
?
phytase
?
show the reaction diagram
-
folding of phytase, i.e. AppA, substrate from Escherichia coli, contains 3 consecutive and 1 nonconsecutive disulfide bonds, DsbC, no activity of DsbC with an AppA mutant C155S/C430S lacking the nonconsecutive disulfide bond
-
-
?
Pipe
?
show the reaction diagram
-
processing and targeting of Pipe, Pipe is an essential Golgi transmembrane-O-sulfotransferase, protein disulfide isomerase-related chaperone Wind is required for processing and correct targeting of the substrate, mapping of multiple substrate binding sites in Pipe, one enzyme site in vicinity of an exposed cluster of tyrosine residues within the thioredoxin fold domain is essential for activity, a second enzyme site in the enzyme's D-domain is also necessary for processing activity, but competitive to the thioredoxin fold domain residue, overview
-
-
?
procollagen I
?
show the reaction diagram
-
-
-
-
?
procollagen III
?
show the reaction diagram
-
-
-
-
?
protein-(SSG)2n
protein(SS)n + n(GSSG)
show the reaction diagram
-
-
-
-
?
Proteins
?
show the reaction diagram
Proteins
Proteins
show the reaction diagram
reduced bovine pancreatic trypsin inhibitor
oxidized bovine pancreatic trypsin inhibitor
show the reaction diagram
gPDI-2, no cativity with gPDI-1 and gPDI-3
-
?
reduced denatured RNase A + GSH
reduced renatured RNase A + GSSG
show the reaction diagram
-
-
-
-
?
reduced Ero1alpha
oxidized Ero1alpha
show the reaction diagram
-
-
-
-
?
reduced glutathione peroxidase 7
oxidized glutathione peroxidase 7
show the reaction diagram
-
-
-
-
?
reduced glutathione peroxidase 8
oxidized glutathione peroxidase 8
show the reaction diagram
-
-
-
-
?
reduced ribonuclease
?
show the reaction diagram
-
refolding of reduced ribonuclease in presence of glutathione, isomerase activity of PDI
-
-
?
reduced ribonuclease A
denatured ribonuclease A
show the reaction diagram
-
-
-
?
reduced RNase
denatured RNase
show the reaction diagram
-
-
-
?
reduced RNase A
RNase A
show the reaction diagram
-
-
-
?
refolding of RNase
?
show the reaction diagram
-
renaturation of reduced RNase
-
-
?
rhodanese
?
show the reaction diagram
riboflavin binding protein
?
show the reaction diagram
-
protein disulfide isomerase and quiescin-sulfhydryl oxidase cooperate in vitro to generate native pairings in substrates ribonuclease A, with four disulfide bonds and 105 disulfide isomers of the fully oxidized protein, and avian riboflavin binding protein, with nine disulfide bonds and more than 34 million corresponding disulfide pairings. The isomerase is not a significant substrate of quiescin-sulfhydryl oxidase. Both reduced RNase and riboflavin binding protein can be efficiently refolded in an aerobic solution containing micromolar concentrations of reduced PDI and nanomolar levels of quiescin-sulfhydryl oxidase without any added oxidized PDI or glutathione redox buffer. In the absence of either quiescin-sulfhydryl oxidase or redox buffer, the fastest refolding of riboflavin binding protein is accomplished with excess reduced PDI and just enough oxidized PDI to generate nine disulfides in the protein client
-
-
?
ribonuclease
?
show the reaction diagram
ribonuclease + dithiothreitol
?
show the reaction diagram
-
-
-
-
?
ribonuclease A
?
show the reaction diagram
-
protein disulfide isomerase and quiescin-sulfhydryl oxidase cooperate in vitro to generate native pairings in ribonuclease A, with four disulfide bonds and 105 disulfide isomers of the fully oxidized protein, and avian riboflavin binding protein, with nine disulfide bonds and more than 34 million corresponding disulfide pairings. The isomerase is not a significant substrate of quiescin-sulfhydryl oxidase. Both reduced RNase and riboflavin binding protein can be efficiently refolded in an aerobic solution containing micromolar concentrations of reduced PDI and nanomolar levels of quiescin-sulfhydryl oxidase without any added oxidized PDI or glutathione redox buffer
-
-
?
ribonuclease T1
?
show the reaction diagram
-
-
-
-
?
ricin
?
show the reaction diagram
-
reductive activation of ricin and ricin A-chain immunotoxins, assay system involving thioredoxin reductase and NADPH, overview
-
-
?
ricin A-chain immunotoxins
?
show the reaction diagram
-
reductive activation of ricin and ricin A-chain immunotoxins, assay system involving thioredoxin reductase and NADPH, overview
-
-
?
RNase
?
show the reaction diagram
RNase A
?
show the reaction diagram
RNase A + DTT
?
show the reaction diagram
RNase B
?
show the reaction diagram
the ability of the ERp57-calnexin complex to mediate folding of 3H-labeled RNase B is completely dependent on a functional interaction between ERp57 and calnexin, overview
-
-
?
scrambled reoxidized lysozyme
?
show the reaction diagram
-
isomerase activity of PDI
-
-
?
scrambled ribonuclease
?
show the reaction diagram
scrambled RNAse
?
show the reaction diagram
-
-
-
?
scrambled RNAse + 2-mercaptoethanol
?
show the reaction diagram
scrambled RNAse + cysteine
?
show the reaction diagram
scrambled RNAse + dithiothreitol
?
show the reaction diagram
-
-
-
-
?
scrambled RNAse A
?
show the reaction diagram
scrambled RNase A
RNase A
show the reaction diagram
-
-
-
?
sRNase
?
show the reaction diagram
-
-
-
-
?
tachyplesin I
?
show the reaction diagram
-
-
-
-
?
TAMRAX3CX4CX2-CONH2
?
show the reaction diagram
-
-
-
-
?
thrombospondin-1 + alpha-thrombin + antithrombin III
thrombospondin-1-S-S-alpha-thrombin-S-S-antithrombin III
show the reaction diagram
-
PDI catalyzes formation of disulfide linked complexes of thrombospondin
-
?
tissue factor
?
show the reaction diagram
transforming growth factor-beta1
?
show the reaction diagram
-
-
-
-
?
tyramine-S-S-poly(D-lysine)
tyramine-SH + HS-poly(D-lysine)
show the reaction diagram
-
-
-
?
unfolded acidic phospholipase A2
refolded acidic phospholipase A2
show the reaction diagram
-
PDI at a molar ratio to acidic phospholipase A2 of 0.1 increases the reactivation of reduced and denatured acidic phospholipase A2 from 4% to 15%
-
?
unfolded bovine pancreatic ribonuclease A + oxidized glutathione
refolded bovine pancreatic ribonuclease A + reduced glutathione
show the reaction diagram
-
oxidative folding of RNase A, 12fold rate acceleration in the presence of PDI
-
?
unfolded bovine pancreatic trypsin inhibitor
folded bovine pancreatic trypsin inhibitor
show the reaction diagram
-
-
?
unfolded bovine pancreatic trypsin inhibitor
refolded bovine pancreatic trypsin inhibitor
show the reaction diagram
unfolded bovine pancreatic trypsin inhibitor
refolded bovine pancreatic trypsin inhibitor + oxidized glutathione
show the reaction diagram
-
oxidative refolding of denatured bovine pancreatic trypsin inhibitor
-
?
unfolded disulfide-bonded protein
refolded disulfide-bonded protein
show the reaction diagram
-
-
-
?
unfolded insulin
folded insulin
show the reaction diagram
-
-
?
unfolded insulin
refolded insulin
show the reaction diagram
-
-
-
?
unfolded insulin + reduced glutathione
refolded insulin + oxidized glutathione
show the reaction diagram
-
-
-
?
unfolded insulin beta-chain
refolded insulin beta-chain
show the reaction diagram
-
-
-
?
unfolded lysozyme
refolded lysozyme
show the reaction diagram
-
oxidative refolding of reduced and denatured lysozyme in glutathione redox buffer
-
?
unfolded mitochondrial malate dehydrogenase
refolded mitochondrial malate dehydrogenase
show the reaction diagram
-
maximum refolding when the PDI concentration is 20fold higher than the malate dehydrogenase concentration
-
?
unfolded pro-carboxypeptidase Y
refolded pro-carboxypeptidase Y
show the reaction diagram
-
-
-
?
unfolded proinsulin
refolded proinsulin
show the reaction diagram
-
PDI acts both as a chaperone and as an isomerase during folding and disulfid bond formation of proinsulin, chaperone and isomerization activity is required at the beginning of proinsulin folding, the late refolding process only depends on the isomerase activity
-
?
unfolded RNase
refolded RNase
show the reaction diagram
unfolded RNase A
refolded RNase
show the reaction diagram
-
-
-
?
unfolded RNase A
refolded RNase A
show the reaction diagram
unfolded RNase A + reduced glutathione
refolded RNase A + oxidized glutathione
show the reaction diagram
-
-
-
?
unfolded rRNaSe
refolded rRNase
show the reaction diagram
-
refolding of reduced rRNaSe
-
?
unofolded bovine pancreatic ribonuclease A + oxidized dithiothreitol
refolded bovine pancreatic ribonuclease A + reduced dithiothreitol
show the reaction diagram
-
oxidative folding of RNase A
-
?
vitronectin + thrombin + antithrombin
vitronectin-thrombin-antithrombin
show the reaction diagram
-
PDI catalyzes the formation of disulfide-linked complexes of vitronectin with thrombin-antithrombin
-
?
additional information
?
-