3.4.24.20: peptidyl-Lys metalloendopeptidase
This is an abbreviated version!
For detailed information about peptidyl-Lys metalloendopeptidase, go to the full flat file.
Word Map on EC 3.4.24.20
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3.4.24.20
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frondosa
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collision
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grifola
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collision-induced
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pleurotus
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ostreatus
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b-ions
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molecular biology
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silac
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lysine-specific
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synthesis
- 3.4.24.20
- frondosa
-
collision
-
grifola
-
collision-induced
-
pleurotus
- ostreatus
-
b-ions
- molecular biology
-
silac
-
lysine-specific
- synthesis
Reaction
Preferential cleavage in proteins: -Xaa-/-Lys- (in which Xaa may be Pro) =
Synonyms
Am-LysN, Armillaria mellea neutral proteinase, aspzincin metalloendopeptidase, aspzincin metalloprotease, EC 3.4.99.30, EC 3.4.99.32, GFMEP, Lys-N, LysN, MEP, peptidyl-Lys metalloendopeptidase, peptidyl-Lys metallopeptidase, Peptidyllysine metalloproteinase, POMEP, Proteinase, peptidyllysine metallo-
ECTree
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General Information
General Information on EC 3.4.24.20 - peptidyl-Lys metalloendopeptidase
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malfunction
mutants with extended S1' binding pocket show specificity towards arginine in subsites S2'-S4' compared to the wild-type protease resulting from the additional negative charge which attract and interact with positively charged residues better than the wild-type. The strict lysine specificity at P1' is preserved in the recombinant rAm-LysN. Relative specificity of site-directed mutants in the substrate binding sites of rAm-LysN compared to the wild-type enzyme with the reference peptide SAQKMVS, overview
physiological function
peptidyl-Lys metallopeptidase (LysN) from Armillaria mellea is an aspzincin metalloprotease, which cleaves in front of lysines
additional information
identification of catalytic residues (Y85, E120, H123, T130, D132, Y135, G136, and D156) and mechanism of work, overview. The S1' binding pocket of LysN is quite narrow and lined with negative charge to specifically accommodate lysine. Residues M65, D83, V88, A101, T105, Q131, Q137, and E159 are involved in substrate specificity. Homology model of Am-LysN based on the crystal structure of Gf-LysN, molecular dynamic simulations, proposed subsite interaction, structure-function analysis, overview
additional information
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identification of catalytic residues (Y85, E120, H123, T130, D132, Y135, G136, and D156) and mechanism of work, overview. The S1' binding pocket of LysN is quite narrow and lined with negative charge to specifically accommodate lysine. Residues M65, D83, V88, A101, T105, Q131, Q137, and E159 are involved in substrate specificity. Homology model of Am-LysN based on the crystal structure of Gf-LysN, molecular dynamic simulations, proposed subsite interaction, structure-function analysis, overview